ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal12o18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA, complete cds Length = 990 Score = 533 bits (269), Expect = e-148 Identities = 283/289 (97%) Strand = Plus / Plus Query: 1 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 620 Query: 61 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 680 Query: 121 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcnacnacg 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 681 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 740 Query: 181 ccgacatcggctactaactagctgccatgcgtgcgtggntggctagtcggtcccaagtca 240 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 741 ccgacatcggctactaagtagctgccatgcgtgcgtggttggctagtcggtcccaagtca 800 Query: 241 gatgggcagtggaggatgagggcttgtggtgtcgatctgtntgggcttg 289 ||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 801 gatgggcagcggaggatgagggcttgtggtgtcgatctgtgtgggcttg 849
>ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1038 Score = 248 bits (125), Expect = 8e-63 Identities = 177/195 (90%) Strand = Plus / Plus Query: 1 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 60 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 584 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 643 Query: 61 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 120 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 644 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 703 Query: 121 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcnacnacg 180 ||||||||||||||||||| ||||| |||||||||| |||| ||||||||||| || ||| Sbjct: 704 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 763 Query: 181 ccgacatcggctact 195 | ||||||||||||| Sbjct: 764 ctgacatcggctact 778
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 248 bits (125), Expect = 8e-63 Identities = 177/195 (90%) Strand = Plus / Minus Query: 1 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 60 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 31969668 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 31969609 Query: 61 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 120 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 31969608 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 31969549 Query: 121 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcnacnacg 180 ||||||||||||||||||| ||||| |||||||||| |||| ||||||||||| || ||| Sbjct: 31969548 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 31969489 Query: 181 ccgacatcggctact 195 | ||||||||||||| Sbjct: 31969488 ctgacatcggctact 31969474
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 248 bits (125), Expect = 8e-63 Identities = 177/195 (90%) Strand = Plus / Minus Query: 1 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 60 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 61620 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 61561 Query: 61 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 120 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 61560 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 61501 Query: 121 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcnacnacg 180 ||||||||||||||||||| ||||| |||||||||| |||| ||||||||||| || ||| Sbjct: 61500 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 61441 Query: 181 ccgacatcggctact 195 | ||||||||||||| Sbjct: 61440 ctgacatcggctact 61426
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 248 bits (125), Expect = 8e-63 Identities = 177/195 (90%) Strand = Plus / Minus Query: 1 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 60 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 32060180 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 32060121 Query: 61 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 120 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 32060120 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 32060061 Query: 121 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcnacnacg 180 ||||||||||||||||||| ||||| |||||||||| |||| ||||||||||| || ||| Sbjct: 32060060 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 32060001 Query: 181 ccgacatcggctact 195 | ||||||||||||| Sbjct: 32060000 ctgacatcggctact 32059986
>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full insert sequence Length = 967 Score = 248 bits (125), Expect = 8e-63 Identities = 177/195 (90%) Strand = Plus / Plus Query: 1 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 60 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 548 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 607 Query: 61 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 120 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 608 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 667 Query: 121 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcnacnacg 180 ||||||||||||||||||| ||||| |||||||||| |||| ||||||||||| || ||| Sbjct: 668 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 727 Query: 181 ccgacatcggctact 195 | ||||||||||||| Sbjct: 728 ctgacatcggctact 742
>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full insert sequence Length = 997 Score = 248 bits (125), Expect = 8e-63 Identities = 177/195 (90%) Strand = Plus / Plus Query: 1 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 60 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 583 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 642 Query: 61 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 120 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 643 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 702 Query: 121 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcnacnacg 180 ||||||||||||||||||| ||||| |||||||||| |||| ||||||||||| || ||| Sbjct: 703 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 762 Query: 181 ccgacatcggctact 195 | ||||||||||||| Sbjct: 763 ctgacatcggctact 777
>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full insert sequence Length = 990 Score = 248 bits (125), Expect = 8e-63 Identities = 177/195 (90%) Strand = Plus / Plus Query: 1 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 60 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 571 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 630 Query: 61 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 120 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 631 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 690 Query: 121 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcnacnacg 180 ||||||||||||||||||| ||||| |||||||||| |||| ||||||||||| || ||| Sbjct: 691 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 750 Query: 181 ccgacatcggctact 195 | ||||||||||||| Sbjct: 751 ctgacatcggctact 765
>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA, complete cds Length = 996 Score = 248 bits (125), Expect = 8e-63 Identities = 177/195 (90%) Strand = Plus / Plus Query: 1 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 60 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 564 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 623 Query: 61 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 120 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 624 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 683 Query: 121 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcnacnacg 180 ||||||||||||||||||| ||||| |||||||||| |||| ||||||||||| || ||| Sbjct: 684 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 743 Query: 181 ccgacatcggctact 195 | ||||||||||||| Sbjct: 744 ctgacatcggctact 758
>gb|AY103687.1| Zea mays PCO106710 mRNA sequence Length = 1242 Score = 236 bits (119), Expect = 3e-59 Identities = 184/205 (89%), Gaps = 1/205 (0%) Strand = Plus / Plus Query: 1 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 60 |||| |||||||| |||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 599 ccgggtggatcgggtgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 658 Query: 61 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 120 |||||||||||||||||||||||||||||||||||||| || | || |||||||||| | Sbjct: 659 ccgccatgagggagatcatcatcgacgtcgagctcgccacccgcctcctccccagggggt 718 Query: 121 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcnacnacg 180 |||||||||||||||| || |||||||||||||||||||| |||||||||||| || || Sbjct: 719 tcatctggcccgtcgcggcctaccgcgagctcatcaacggagacctcgtcgtcgacgaca 778 Query: 181 ccgacatcggctactaactagctgc 205 ||||||||||||| ||||||||| Sbjct: 779 aggacatcggctact-actagctgc 802
>emb|AL121774.5|CNS01DSF Human chromosome 14 DNA sequence BAC R-430G13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171030 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 240 agatgggcagtggaggatgagg 261 |||||||||||||||||||||| Sbjct: 125206 agatgggcagtggaggatgagg 125185
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccgtcagcggcgagaagaag 59 |||||||||||||||||||| Sbjct: 3593454 ccgtcagcggcgagaagaag 3593435
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 tcatcgccgtcagcggcgag 53 |||||||||||||||||||| Sbjct: 1323871 tcatcgccgtcagcggcgag 1323852
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 tcatcgccgtcagcggcgagaaga 57 ||||| |||||||||||||||||| Sbjct: 190147 tcatcaccgtcagcggcgagaaga 190124
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 tcatcgccgtcagcggcgagaaga 57 ||||| |||||||||||||||||| Sbjct: 103983 tcatcaccgtcagcggcgagaaga 103960
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 tcatcgccgtcagcggcgagaaga 57 ||||| |||||||||||||||||| Sbjct: 179712 tcatcaccgtcagcggcgagaaga 179689
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cgacgtcgagctcgccgcca 102 |||||||||||||||||||| Sbjct: 1823612 cgacgtcgagctcgccgcca 1823593
>gb|AY529884.1| Uncultured bacterium clone DC-6 16S ribosomal RNA gene, partial sequence Length = 648 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 gtggaggatgagggcttgtg 268 |||||||||||||||||||| Sbjct: 382 gtggaggatgagggcttgtg 401
>gb|AC090951.1|AC090951 Homo sapiens chromosome 3 clone RP11-488M6 map 3p, complete sequence Length = 181394 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 cagtggaggatgagggcttgtggt 270 |||||||||| ||||||||||||| Sbjct: 119619 cagtggaggaggagggcttgtggt 119642
>emb|BX814457.1|CNS0ADUS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB75ZA08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 411 Score = 40.1 bits (20), Expect = 3.8 Identities = 65/80 (81%) Strand = Plus / Plus Query: 6 tggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgcc 65 |||||||| ||||| ||| | |||||| |||| || | || || |||||||| ||||| Sbjct: 133 tggatcgggtgggttggaagaagctacttcatagctattagtggtgagaagaaacccgcg 192 Query: 66 atgagggagatcatcatcga 85 |||| |||||||||||||| Sbjct: 193 atgaaagagatcatcatcga 212
>gb|AC090005.1|AC090005 Homo sapiens chromosome 3 clone RP11-9D10 map 3p, complete sequence Length = 177626 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 cagtggaggatgagggcttgtggt 270 |||||||||| ||||||||||||| Sbjct: 88194 cagtggaggaggagggcttgtggt 88217
>gb|AC066597.4|AC066597 Homo sapiens chromosome 3 clone RP11-488O8 map 3p, complete sequence Length = 183607 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cagtggaggatgagggcttgtggt 270 |||||||||| ||||||||||||| Sbjct: 35936 cagtggaggaggagggcttgtggt 35913
>gb|AC068319.4|AC068319 Homo sapiens chromosome 3 clone RP11-470I10 map 3p, complete sequence Length = 217456 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cagtggaggatgagggcttgtggt 270 |||||||||| ||||||||||||| Sbjct: 80981 cagtggaggaggagggcttgtggt 80958
>gb|AF139468.2|AF139468 Vigna radiata photosystem I reaction center subunit III (CipPsaF) mRNA, complete cds; nuclear gene for chloroplast product Length = 885 Score = 40.1 bits (20), Expect = 3.8 Identities = 71/88 (80%) Strand = Plus / Plus Query: 1 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 60 |||| |||||||| ||||| || || |||||||| || ||| |||| | ||||| || | Sbjct: 564 ccgggtggatcgggtgggtgggtcggagctaccttattgccatcagggatgagaaaaaac 623 Query: 61 ccgccatgagggagatcatcatcgacgt 88 | | |||| |||||||||||||||||| Sbjct: 624 cgacgatgaaggagatcatcatcgacgt 651
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 agctcatcaacggcgacctcgtcg 171 |||||||||||| ||||||||||| Sbjct: 1147974 agctcatcaacgacgacctcgtcg 1147951
>gb|AC121951.3| Mus musculus BAC clone RP24-217M7 from 9, complete sequence Length = 163528 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 gggcagtggaggatgagggc 263 |||||||||||||||||||| Sbjct: 89212 gggcagtggaggatgagggc 89193
>gb|AC090509.2| Homo sapiens chromosome 3 clone RP11-512I22 map 3p, complete sequence Length = 166000 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 cagtggaggatgagggcttgtggt 270 |||||||||| ||||||||||||| Sbjct: 80982 cagtggaggaggagggcttgtggt 80959 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,404,344 Number of Sequences: 3902068 Number of extensions: 1404344 Number of successful extensions: 30730 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 30518 Number of HSP's gapped (non-prelim): 213 length of query: 289 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 267 effective length of database: 17,147,199,772 effective search space: 4578302339124 effective search space used: 4578302339124 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
