>ref|XM_475203.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1341

 Score =  377 bits (190), Expect = e-101
 Identities = 290/322 (90%), Gaps = 1/322 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 70
           ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||  |||
Sbjct: 282 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 340

                                                                       
Query: 71  tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 130
           |||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 341 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 400

                                                                       
Query: 131 tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 190
           ||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 401 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 460

                                                                       
Query: 191 gcttcgccccgctccctgcagatgacctcgttgattttgcttctgaactgaagctatcat 250
           |||| || || || |||||||||||||||| ||||||| | || ||| ||||||| ||||
Sbjct: 461 gctttgcaccccttcctgcagatgacctcggtgatttttcatccgaattgaagctgtcat 520

                                                                       
Query: 251 ttttccagctgggaatcagtcatcagatatcagcatcgattgtgatgcaggttctttgcc 310
           |||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| || |
Sbjct: 521 ttttccagctcggaatcagtcatcagatttcagcatctattgtcatgcaggttctctgtc 580

                                 
Query: 311 atgttcttccatcacttgaaaa 332
           ||||||||||||||||||||||
Sbjct: 581 atgttcttccatcacttgaaaa 602

>dbj|AK067298.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106K06, full
           insert sequence
          Length = 2452

 Score =  377 bits (190), Expect = e-101
 Identities = 290/322 (90%), Gaps = 1/322 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 70
           ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||  |||
Sbjct: 356 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 414

                                                                       
Query: 71  tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 130
           |||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 415 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 474

                                                                       
Query: 131 tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 190
           ||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 475 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 534

                                                                       
Query: 191 gcttcgccccgctccctgcagatgacctcgttgattttgcttctgaactgaagctatcat 250
           |||| || || || |||||||||||||||| ||||||| | || ||| ||||||| ||||
Sbjct: 535 gctttgcaccccttcctgcagatgacctcggtgatttttcatccgaattgaagctgtcat 594

                                                                       
Query: 251 ttttccagctgggaatcagtcatcagatatcagcatcgattgtgatgcaggttctttgcc 310
           |||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| || |
Sbjct: 595 ttttccagctcggaatcagtcatcagatttcagcatctattgtcatgcaggttctctgtc 654

                                 
Query: 311 atgttcttccatcacttgaaaa 332
           ||||||||||||||||||||||
Sbjct: 655 atgttcttccatcacttgaaaa 676

>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
             complete sequence
          Length = 146303

 Score =  232 bits (117), Expect = 6e-58
 Identities = 181/201 (90%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                         
Query: 11    caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 70
             ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||  |||
Sbjct: 12862 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 12804

                                                                         
Query: 71    tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 130
             |||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 12803 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 12744

                                                                         
Query: 131   tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 190
             ||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 12743 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 12684

                                  
Query: 191   gcttcgccccgctccctgcag 211
             |||| || || || |||||||
Sbjct: 12683 gctttgcaccccttcctgcag 12663



 Score =  117 bits (59), Expect = 2e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                         
Query: 207   tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 266
             |||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 12532 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 12473

                                                    
Query: 267   cagtcatcagatatcagcatcgattgtgatgcaggttct 305
             |||||||||||| |||||||| ||||| |||||||||||
Sbjct: 12472 cagtcatcagatttcagcatctattgtcatgcaggttct 12434



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 299   aggttctttgccatgttcttccatcacttgaaaa 332
             ||||||| || |||||||||||||||||||||||
Sbjct: 12214 aggttctctgtcatgttcttccatcacttgaaaa 12181

>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21,
              complete sequence
          Length = 151267

 Score =  232 bits (117), Expect = 6e-58
 Identities = 181/201 (90%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                          
Query: 11     caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 70
              ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||  |||
Sbjct: 130684 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 130626

                                                                          
Query: 71     tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 130
              |||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 130625 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 130566

                                                                          
Query: 131    tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 190
              ||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 130565 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 130506

                                   
Query: 191    gcttcgccccgctccctgcag 211
              |||| || || || |||||||
Sbjct: 130505 gctttgcaccccttcctgcag 130485



 Score =  117 bits (59), Expect = 2e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                          
Query: 207    tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 266
              |||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 130354 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 130295

                                                     
Query: 267    cagtcatcagatatcagcatcgattgtgatgcaggttct 305
              |||||||||||| |||||||| ||||| |||||||||||
Sbjct: 130294 cagtcatcagatttcagcatctattgtcatgcaggttct 130256



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                
Query: 299    aggttctttgccatgttcttccatcacttgaaaa 332
              ||||||| || |||||||||||||||||||||||
Sbjct: 130036 aggttctctgtcatgttcttccatcacttgaaaa 130003

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  232 bits (117), Expect = 6e-58
 Identities = 181/201 (90%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                            
Query: 11       caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 70
                ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||  |||
Sbjct: 19208786 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 19208728

                                                                            
Query: 71       tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 130
                |||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 19208727 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 19208668

                                                                            
Query: 131      tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 190
                ||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 19208667 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 19208608

                                     
Query: 191      gcttcgccccgctccctgcag 211
                |||| || || || |||||||
Sbjct: 19208607 gctttgcaccccttcctgcag 19208587



 Score =  117 bits (59), Expect = 2e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                            
Query: 207      tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 266
                |||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 19208456 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 19208397

                                                       
Query: 267      cagtcatcagatatcagcatcgattgtgatgcaggttct 305
                |||||||||||| |||||||| ||||| |||||||||||
Sbjct: 19208396 cagtcatcagatttcagcatctattgtcatgcaggttct 19208358



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 299      aggttctttgccatgttcttccatcacttgaaaa 332
                ||||||| || |||||||||||||||||||||||
Sbjct: 19208138 aggttctctgtcatgttcttccatcacttgaaaa 19208105

>ref|XM_587644.2| PREDICTED: Bos taurus similar to PR domain containing 13,
           transcript variant 1 (LOC510505), mRNA
          Length = 2124

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 42  cgtggcggagggcgcggcggaggcct 67
           ||||||||||||||||| ||||||||
Sbjct: 714 cgtggcggagggcgcggaggaggcct 689

>ref|XM_865466.1| PREDICTED: Bos taurus similar to PR domain containing 13,
           transcript variant 2 (LOC510505), mRNA
          Length = 2163

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 42  cgtggcggagggcgcggcggaggcct 67
           ||||||||||||||||| ||||||||
Sbjct: 753 cgtggcggagggcgcggaggaggcct 728

>gb|AC083799.17| Homo sapiens 3 BAC RP11-332M2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184129

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 266   tcagtcatcagatatcagcatc 287
             ||||||||||||||||||||||
Sbjct: 16416 tcagtcatcagatatcagcatc 16395

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
             complete sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    ggcggagggcgcggcggaggc 65
             |||||||||||||||||||||
Sbjct: 12003 ggcggagggcgcggcggaggc 12023

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    ggcggagggcgcggcggaggc 65
             |||||||||||||||||||||
Sbjct: 12003 ggcggagggcgcggcggaggc 12023

>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    ggcggagggcgcggcggaggc 65
             |||||||||||||||||||||
Sbjct: 12003 ggcggagggcgcggcggaggc 12023

>emb|AL663083.5| Mouse DNA sequence from clone RP23-280G3 on chromosome 11 Contains
            the 3' end of the gene for a novel protein and the 3' end
            of a novel gene, complete sequence
          Length = 191191

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  ttgtgatgcaggttctttgc 309
            ||||||||||||||||||||
Sbjct: 2384 ttgtgatgcaggttctttgc 2403

>dbj|AB210222.1| Setaria italica GBSS1 gene, transposable element TSI-3 in intron 1
          Length = 3655

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  ggcggagggcgcggcggagg 64
           ||||||||||||||||||||
Sbjct: 823 ggcggagggcgcggcggagg 804

>dbj|AB210215.1| Setaria italica GBSS1 gene, transposable element TSI-2 in intron 1
          Length = 6078

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  ggcggagggcgcggcggagg 64
           ||||||||||||||||||||
Sbjct: 821 ggcggagggcgcggcggagg 802

>dbj|AB210214.1| Setaria italica GBSS1 gene, transposable element TSI-3 and
            transposable element TSI-6 in intron 1
          Length = 4881

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   ggcggagggcgcggcggagg 64
            ||||||||||||||||||||
Sbjct: 2050 ggcggagggcgcggcggagg 2031

>gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, complete sequence
          Length = 135968

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 224   attttgcttctgaactgaagctat 247
             |||||||||||||| |||||||||
Sbjct: 15479 attttgcttctgaaatgaagctat 15502

>gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, complete sequence
          Length = 174055

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    gcaggttctttgccatgttc 316
              ||||||||||||||||||||
Sbjct: 157670 gcaggttctttgccatgttc 157651

>dbj|AK147615.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
            full-length enriched library, clone:M5C1091A08
            product:unclassifiable, full insert sequence
          Length = 6842

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  ttctttgccatgttcttcca 321
            ||||||||||||||||||||
Sbjct: 5392 ttctttgccatgttcttcca 5373

>dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1100B9
          Length = 151959

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   gcaggttctttgccatgttc 316
             ||||||||||||||||||||
Sbjct: 72179 gcaggttctttgccatgttc 72160

>dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1016F12, complete
              sequence
          Length = 200738

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    gcaggttctttgccatgttc 316
              ||||||||||||||||||||
Sbjct: 146808 gcaggttctttgccatgttc 146789

>gb|AC005515.1|AC005515 Homo sapiens chromosome 19, cosmid F19346, complete sequence
          Length = 39132

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     cacgaggtcaggttcctggc 22
             ||||||||||||||||||||
Sbjct: 23746 cacgaggtcaggttcctggc 23765

>gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complete sequence
          Length = 191764

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ttctttgccatgttcttcca 321
             ||||||||||||||||||||
Sbjct: 75384 ttctttgccatgttcttcca 75403

>emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-725G5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 195835

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    tcaggttcctggcacctggc 29
             ||||||||||||||||||||
Sbjct: 74556 tcaggttcctggcacctggc 74537

>dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1018C4, complete
            sequence
          Length = 174667

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  gcaggttctttgccatgttc 316
            ||||||||||||||||||||
Sbjct: 2336 gcaggttctttgccatgttc 2317


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,050,657
Number of Sequences: 3902068
Number of extensions: 3050657
Number of successful extensions: 57499
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57364
Number of HSP's gapped (non-prelim): 135
length of query: 352
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 330
effective length of database: 17,147,199,772
effective search space: 5658575924760
effective search space used: 5658575924760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)