ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal13d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 648 0.0
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
3dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
4gb|AY740529.1| Nicotiana tabacum isochorismate synthase protein ... 76 2e-10
5gb|AC150777.2| Medicago truncatula chromosome 7 BAC clone mte1-5... 72 2e-09
6gb|AY743431.1| Capsicum annuum isochorismate synthase (ICS1) mRN... 70 1e-08
7gb|AC146562.17| Medicago truncatula clone mth2-14d10, complete s... 66 1e-07
8gb|AC068064.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 46 0.14
9emb|AL360271.12| Human DNA sequence from clone RP11-513D4 on chr... 44 0.55
10gb|AC135465.23| Medicago truncatula clone mth2-24h22, complete s... 42 2.2
11emb|AL049553.20|HSJ402N21 Human DNA sequence from clone RP3-402N... 42 2.2
12gb|AC154386.2| Mus musculus BAC clone RP23-27A13 from 13, comple... 42 2.2
13emb|AL136087.12| Human DNA sequence from clone RP1-137F1 on chro... 42 2.2
14emb|CT030714.5| Mouse DNA sequence from clone RP23-223P19 on chr... 42 2.2
15gb|AC154662.2| Mus musculus BAC clone RP24-279F20 from chromosom... 42 2.2
16gb|AC137979.6| Mus musculus chromosome 5, clone RP24-92M6, compl... 40 8.6
17ref|XM_445387.1| Candida glabrata CBS138, CAGL0C04917g partial mRNA 40 8.6
18gb|AC127564.4| Mus musculus BAC clone RP24-290E2 from chromosome... 40 8.6
19ref|XM_644357.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 40 8.6
20ref|XM_672074.1| Plasmodium berghei strain ANKA hypothetical pro... 40 8.6
21emb|AL121875.10|HSBA51C14 Human DNA sequence from clone RP11-51C... 40 8.6
22emb|AL049651.2|HSJ753D10 Human DNA sequence from clone RP4-753D1... 40 8.6
23emb|CR380949.1| Candida glabrata strain CBS138 chromosome C comp... 40 8.6
24emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 8.6
25emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 8.6
26emb|BX927148.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 8.6
27emb|CR376736.5| Zebrafish DNA sequence from clone DKEYP-86G11 in... 40 8.6
28emb|CR387929.4| Zebrafish DNA sequence from clone DKEY-172H18 in... 40 8.6
29gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 8.6
30gb|AC093718.3| Homo sapiens 12 BAC RP11-742C6 (Roswell Park Canc... 40 8.6
31gb|AC069549.5| Homo sapiens chromosome 10 clone RP11-575A19, com... 40 8.6
32emb|BX511101.3| Zebrafish DNA sequence from clone DKEYP-92F1 in ... 40 8.6
33gb|AC144407.2| Homo sapiens chromosome 8, clone XXfos-800816B5, ... 40 8.6
34gb|AC142398.2| Homo sapiens chromosome 8, clone XXfos-87101G1, c... 40 8.6
35gb|AF314192.1|AF314192 Corynebacterium glutamicum rrnE operon, c... 40 8.6
36gb|AC021079.4|AC021079 Homo sapiens chromosome 5 clone CTC-202C8... 40 8.6
37dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
38dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 8.6
39gb|AC108130.3| Homo sapiens chromosome 5 clone RP11-84B12, compl... 40 8.6
40gb|AC007661.2|AC007661 Arabidopsis thaliana chromosome II sectio... 40 8.6
41dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
42emb|AL391703.9| Human DNA sequence from clone RP11-422P8 on chro... 40 8.6
43gb|AC102485.25| Mus musculus chromosome 5, clone RP24-469G19, co... 40 8.6
44emb|AL929535.6| Zebrafish DNA sequence from clone CH211-151O1, c... 40 8.6 
>dbj|AK120689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169E21, full
            insert sequence
          Length = 2172

 Score =  648 bits (327), Expect = 0.0
 Identities = 489/543 (90%)
 Strand = Plus / Plus

                                                                        
Query: 28   atttgcttctaagcatcaaagaggacactgaatttactatagtacgggaaaacataaaga 87
            ||||||| ||||| | ||||||||| | ||||||||||||||||||||| | ||||||||
Sbjct: 1295 atttgctactaagtagcaaagaggataatgaatttactatagtacgggacagcataaaga 1354

                                                                        
Query: 88   agaagcttgagatgatatgtgatgaggttgttgtcaatcccagcaaggcccttcggaaac 147
            ||||||| |||||||| || ||||| || |||||| ||||||||||||||||||||||||
Sbjct: 1355 agaagctggagatgatctgcgatgatgtggttgtccatcccagcaaggcccttcggaaac 1414

                                                                        
Query: 148  ttccaagagtacaacatttgtcagctcaattagctgcaagattaagaaatgaggacgacg 207
            ||||||||||||||||  |||||||||| |||||||||||| | || ||||| ||||| |
Sbjct: 1415 ttccaagagtacaacacctgtcagctcagttagctgcaagaatgaggaatgaagacgatg 1474

                                                                        
Query: 208  agtttgacatcctaaatgctcttcatccaagcccagctgtttgtggcttgcccactgaag 267
            ||||||||||||||||| |||||||||| |||||||| ||||||||  ||||||||||||
Sbjct: 1475 agtttgacatcctaaatactcttcatccgagcccagccgtttgtggtctgcccactgaag 1534

                                                                        
Query: 268  aagcgcgccaattcatacgagattatgaaattttcgaccgtggaatgtatgctggacctg 327
            | || ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1535 aggcacgccaattcatacaagattatgaaatttttgaccgtggaatgtatgctggacctg 1594

                                                                        
Query: 328  ttggttggtttggtggggctgaaagtgagtttgctgttgggattagatcagcactacttg 387
            ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 1595 ttggttggtttggaggagctgaaagtgagttcgctgttgggattagatcagcactactag 1654

                                                                        
Query: 388  gaaaaggatatagcactttagtttatgccggtgccgggattgtcgaaggtacaaatccat 447
            |||||||  ||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 1655 gaaaaggtcatagcactttagtttatgctggtgccggaattgttgaaggtacaaatccat 1714

                                                                        
Query: 448  cttttgaatgggatgagcttgatctcaaagcatctcagtttgcaaagttgttgaagtatc 507
            | |||||||||||||||||||| ||||||||||||||||||||||||||  || ||||||
Sbjct: 1715 cctttgaatgggatgagcttgacctcaaagcatctcagtttgcaaagttactgcagtatc 1774

                                                                        
Query: 508  aagaacatcatattttctaccaagaggcaggaaacatggggacattgatttgaactgtaa 567
            ||||||| ||||||| ||  |||||||| | ||| ||||| ||| ||||||||| |||||
Sbjct: 1775 aagaacaacatatttgcttgcaagaggctgaaaatatgggaacagtgatttgaattgtaa 1834

               
Query: 568  cta 570
            |||
Sbjct: 1835 cta 1837
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  159 bits (80), Expect = 1e-35
 Identities = 95/100 (95%)
 Strand = Plus / Plus

                                                                            
Query: 294      gaaattttcgaccgtggaatgtatgctggacctgttggttggtttggtggggctgaaagt 353
                |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 11760403 gaaatttttgaccgtggaatgtatgctggacctgttggttggtttggaggagctgaaagt 11760462

                                                        
Query: 354      gagtttgctgttgggattagatcagcactacttggaaaag 393
                ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 11760463 gagttcgctgttgggattagatcagcactactaggaaaag 11760502



 Score =  137 bits (69), Expect = 5e-29
 Identities = 84/89 (94%)
 Strand = Plus / Plus

                                                                            
Query: 397      atagcactttagtttatgccggtgccgggattgtcgaaggtacaaatccatcttttgaat 456
                ||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 11760632 atagcactttagtttatgctggtgccggaattgttgaaggtacaaatccatcctttgaat 11760691

                                             
Query: 457      gggatgagcttgatctcaaagcatctcag 485
                ||||||||||||| |||||||||||||||
Sbjct: 11760692 gggatgagcttgacctcaaagcatctcag 11760720



 Score =  121 bits (61), Expect = 3e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                            
Query: 97       agatgatatgtgatgaggttgttgtcaatcccagcaaggcccttcggaaacttccaagag 156
                ||||||| || ||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct: 11759912 agatgatctgcgatgatgtggttgtccatcccagcaaggcccttcggaaacttccaagag 11759971

                                                                 
Query: 157      tacaacatttgtcagctcaattagctgcaagattaagaaatgaggacga 205
                |||||||  |||||||||| |||||||||||| | || ||||| |||||
Sbjct: 11759972 tacaacacctgtcagctcagttagctgcaagaatgaggaatgaagacga 11760020



 Score =  109 bits (55), Expect = 1e-20
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                            
Query: 208      agtttgacatcctaaatgctcttcatccaagcccagctgtttgtggcttgcccactgaag 267
                ||||||||||||||||| |||||||||| |||||||| ||||||||  ||||||||||||
Sbjct: 11760181 agtttgacatcctaaatactcttcatccgagcccagccgtttgtggtctgcccactgaag 11760240

                                           
Query: 268      aagcgcgccaattcatacgagattatg 294
                | || ||||||||||||| ||||||||
Sbjct: 11760241 aggcacgccaattcatacaagattatg 11760267



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                            
Query: 482      tcagtttgcaaagttgttgaagtatcaagaacatcatattttctaccaagaggcaggaaa 541
                |||||||||||||||  || ||||||||||||| ||||||| ||  |||||||| | |||
Sbjct: 11760802 tcagtttgcaaagttactgcagtatcaagaacaacatatttgcttgcaagaggctgaaaa 11760861

                                                        
Query: 542      catggggacattgatttgaactgtaactaataagtcatca 581
                 ||||| ||| ||||||||| |||||||| ||||||||||
Sbjct: 11760862 tatgggaacagtgatttgaattgtaactagtaagtcatca 11760901



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                                
Query: 346      ctgaaagtgagtttgctgttgggattagatcagcactacttggaaaag 393
                |||||||||||||||||||||||||||| ||||||||  |||||||||
Sbjct: 11763725 ctgaaagtgagtttgctgttgggattaggtcagcacttgttggaaaag 11763772



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                   
Query: 44       caaagaggacactgaatttactatagtacgggaaaacataaagaagaagct 94
                ||||||||| | ||||||||||||||||||||| | |||||||||||||||
Sbjct: 11759718 caaagaggataatgaatttactatagtacgggacagcataaagaagaagct 11759768



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 125      tcccagcaaggcccttcggaaactt 149
                |||||||||||||||| ||||||||
Sbjct: 11763352 tcccagcaaggccctttggaaactt 11763376
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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1506_A04
          Length = 114998

 Score =  159 bits (80), Expect = 1e-35
 Identities = 95/100 (95%)
 Strand = Plus / Plus

                                                                        
Query: 294  gaaattttcgaccgtggaatgtatgctggacctgttggttggtttggtggggctgaaagt 353
            |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 3221 gaaatttttgaccgtggaatgtatgctggacctgttggttggtttggaggagctgaaagt 3280

                                                    
Query: 354  gagtttgctgttgggattagatcagcactacttggaaaag 393
            ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 3281 gagttcgctgttgggattagatcagcactactaggaaaag 3320



 Score =  137 bits (69), Expect = 5e-29
 Identities = 84/89 (94%)
 Strand = Plus / Plus

                                                                        
Query: 397  atagcactttagtttatgccggtgccgggattgtcgaaggtacaaatccatcttttgaat 456
            ||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 3450 atagcactttagtttatgctggtgccggaattgttgaaggtacaaatccatcctttgaat 3509

                                         
Query: 457  gggatgagcttgatctcaaagcatctcag 485
            ||||||||||||| |||||||||||||||
Sbjct: 3510 gggatgagcttgacctcaaagcatctcag 3538



 Score =  121 bits (61), Expect = 3e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                        
Query: 97   agatgatatgtgatgaggttgttgtcaatcccagcaaggcccttcggaaacttccaagag 156
            ||||||| || ||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct: 2730 agatgatctgcgatgatgtggttgtccatcccagcaaggcccttcggaaacttccaagag 2789

                                                             
Query: 157  tacaacatttgtcagctcaattagctgcaagattaagaaatgaggacga 205
            |||||||  |||||||||| |||||||||||| | || ||||| |||||
Sbjct: 2790 tacaacacctgtcagctcagttagctgcaagaatgaggaatgaagacga 2838



 Score =  109 bits (55), Expect = 1e-20
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                        
Query: 208  agtttgacatcctaaatgctcttcatccaagcccagctgtttgtggcttgcccactgaag 267
            ||||||||||||||||| |||||||||| |||||||| ||||||||  ||||||||||||
Sbjct: 2999 agtttgacatcctaaatactcttcatccgagcccagccgtttgtggtctgcccactgaag 3058

                                       
Query: 268  aagcgcgccaattcatacgagattatg 294
            | || ||||||||||||| ||||||||
Sbjct: 3059 aggcacgccaattcatacaagattatg 3085



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                        
Query: 482  tcagtttgcaaagttgttgaagtatcaagaacatcatattttctaccaagaggcaggaaa 541
            |||||||||||||||  || ||||||||||||| ||||||| ||  |||||||| | |||
Sbjct: 3620 tcagtttgcaaagttactgcagtatcaagaacaacatatttgcttgcaagaggctgaaaa 3679

                                                    
Query: 542  catggggacattgatttgaactgtaactaataagtcatca 581
             ||||| ||| ||||||||| |||||||| ||||||||||
Sbjct: 3680 tatgggaacagtgatttgaattgtaactagtaagtcatca 3719



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                            
Query: 346  ctgaaagtgagtttgctgttgggattagatcagcactacttggaaaag 393
            |||||||||||||||||||||||||||| ||||||||  |||||||||
Sbjct: 6543 ctgaaagtgagtttgctgttgggattaggtcagcacttgttggaaaag 6590



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                               
Query: 44   caaagaggacactgaatttactatagtacgggaaaacataaagaagaagct 94
            ||||||||| | ||||||||||||||||||||| | |||||||||||||||
Sbjct: 2536 caaagaggataatgaatttactatagtacgggacagcataaagaagaagct 2586



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 125  tcccagcaaggcccttcggaaactt 149
            |||||||||||||||| ||||||||
Sbjct: 6170 tcccagcaaggccctttggaaactt 6194
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>gb|AY740529.1| Nicotiana tabacum isochorismate synthase protein (ICS1) mRNA,
           partial cds
          Length = 907

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                       
Query: 294 gaaattttcgaccgtggaatgtatgctggacctgttggttggtttggtggggctgaaagt 353
           ||||| || ||||| |||||||||||||| ||||||||||||||||| ||||  || |||
Sbjct: 784 gaaatgtttgaccgaggaatgtatgctggtcctgttggttggtttggaggggaagagagt 843

                         
Query: 354 gagtttgctgttgg 367
           || |||||||||||
Sbjct: 844 gaatttgctgttgg 857
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>gb|AC150777.2| Medicago truncatula chromosome 7 BAC clone mte1-51d4, complete sequence
          Length = 98197

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                         
Query: 309   ggaatgtatgctggacctgttggttggtttggtggggctgaaagtgagtttgctgttggg 368
             |||||||||||||||||||||||||||||||| || |  || ||||| ||||| ||||| 
Sbjct: 25536 ggaatgtatgctggacctgttggttggtttggaggaggagagagtgactttgccgttggc 25477

                         
Query: 369   attagatcagca 380
             || |||||||||
Sbjct: 25476 atcagatcagca 25465
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>gb|AY743431.1| Capsicum annuum isochorismate synthase (ICS1) mRNA, complete cds
          Length = 2094

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                        
Query: 293  tgaaattttcgaccgtggaatgtatgctggacctgttggttggtttggtggggctgaaag 352
            |||||| || ||||| |||||||||||||| | ||||||||||||||| ||||  || ||
Sbjct: 1494 tgaaatgtttgaccgaggaatgtatgctggtcttgttggttggtttggaggggaagagag 1553

                           
Query: 353  tgagtttgctgttgg 367
            ||| |||||||||||
Sbjct: 1554 tgaatttgctgttgg 1568
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>gb|AC146562.17| Medicago truncatula clone mth2-14d10, complete sequence
          Length = 118505

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                         
Query: 312   atgtatgctggacctgttggttggtttggtggggctgaaagtgagtttgctgttgggatt 371
             ||||||||||||||||||||||||||||| || |  || ||||||||||| ||||| || 
Sbjct: 36422 atgtatgctggacctgttggttggtttggaggaggagagagtgagtttgccgttggcatc 36363

                      
Query: 372   agatcagca 380
             || ||||||
Sbjct: 36362 aggtcagca 36354
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>gb|AC068064.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-199I14, complete
             sequence
          Length = 152776

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 481   ctcagtttgcaaagttgttgaag 503
             |||||||||||||||||||||||
Sbjct: 10317 ctcagtttgcaaagttgttgaag 10339
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>emb|AL360271.12| Human DNA sequence from clone RP11-513D4 on chromosome 1 Contains part
             of a novel gene (FLJ40773), a ribosomal protein L10a
             (RPL10A) pseudogene, pseudogene similar to part of
             excision repair cross-complementing rodent repair
             deficiency complementation group 3 (xeroderma pigmentosum
             group B complementing) (ERCC3) and a novel zinc finger
             protein pseudogene, complete sequence
          Length = 96789

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 81    ataaagaagaagcttgagatgatatgtgatgagg 114
             |||| |||||||||| ||| ||||||||||||||
Sbjct: 19282 ataaggaagaagcttaagaagatatgtgatgagg 19249
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>gb|AC135465.23| Medicago truncatula clone mth2-24h22, complete sequence
          Length = 109043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 45    aaagaggacactgaatttactatag 69
             |||||| ||||||||||||||||||
Sbjct: 44533 aaagagaacactgaatttactatag 44509
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>emb|AL049553.20|HSJ402N21 Human DNA sequence from clone RP3-402N21 on chromosome 6p21.1-21.31
              Contains the MDGA1 gene for MAM domain containing
              glycosylphosphatidylinositol anchor 1, the gene for a novel
              protein and four CpG islands, complete sequence
          Length = 170302

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 34     ttctaagcatcaaagaggaca 54
              |||||||||||||||||||||
Sbjct: 160868 ttctaagcatcaaagaggaca 160848
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>gb|AC154386.2| Mus musculus BAC clone RP23-27A13 from 13, complete sequence
          Length = 170110

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 483    cagtttgcaaagttgttgaag 503
              |||||||||||||||||||||
Sbjct: 104094 cagtttgcaaagttgttgaag 104074
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>emb|AL136087.12| Human DNA sequence from clone RP1-137F1 on chromosome 6p21.1-21.2,
              complete sequence
          Length = 140136

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 334    ggtttggtggggctgaaagtg 354
              |||||||||||||||||||||
Sbjct: 107199 ggtttggtggggctgaaagtg 107219
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>emb|CT030714.5| Mouse DNA sequence from clone RP23-223P19 on chromosome 13, complete
            sequence
          Length = 176581

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 483  cagtttgcaaagttgttgaag 503
            |||||||||||||||||||||
Sbjct: 9200 cagtttgcaaagttgttgaag 9220
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>gb|AC154662.2| Mus musculus BAC clone RP24-279F20 from chromosome 13, complete
             sequence
          Length = 170831

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 483   cagtttgcaaagttgttgaag 503
             |||||||||||||||||||||
Sbjct: 24388 cagtttgcaaagttgttgaag 24368
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>gb|AC137979.6| Mus musculus chromosome 5, clone RP24-92M6, complete sequence
          Length = 170969

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   ggaaacttccaagagtacaa 161
             ||||||||||||||||||||
Sbjct: 11588 ggaaacttccaagagtacaa 11607
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>ref|XM_445387.1| Candida glabrata CBS138, CAGL0C04917g partial mRNA
          Length = 3342

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 165  ttgtcagctcaattagctgcaagattaa 192
            ||||||||||  ||||||||||||||||
Sbjct: 3137 ttgtcagctctcttagctgcaagattaa 3110
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>gb|AC127564.4| Mus musculus BAC clone RP24-290E2 from chromosome 5, complete sequence
          Length = 157220

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   ggaaacttccaagagtacaa 161
             ||||||||||||||||||||
Sbjct: 18803 ggaaacttccaagagtacaa 18822
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>ref|XM_644357.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
            (301.t00002) partial mRNA
          Length = 6750

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  tatcaagaacatcatatttt 523
            ||||||||||||||||||||
Sbjct: 2447 tatcaagaacatcatatttt 2466
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>ref|XM_672074.1| Plasmodium berghei strain ANKA hypothetical protein (PB000702.01.0)
           partial mRNA
          Length = 786

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 501 aagtatcaagaacatcatat 520
           ||||||||||||||||||||
Sbjct: 652 aagtatcaagaacatcatat 633
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>emb|AL121875.10|HSBA51C14 Human DNA sequence from clone RP11-51C14 on chromosome Xq26.2-27.3
             Contains an embryonic ectoderm development (EED)
             pseudogene, a ribosomal protein S17 (RPS17) pseudogene,
             the SOX3 gene for SRY (sex determining region Y)-box 3 and
             three CpG islands, complete sequence
          Length = 148598

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 35    tctaagcatcaaagaggacactgaattt 62
             ||||||| |||||||||||||| |||||
Sbjct: 62722 tctaagcttcaaagaggacactcaattt 62695
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>emb|AL049651.2|HSJ753D10 Human DNA sequence from clone RP4-753D10 on chromosome 20 Contains the
             SSTR4 gene for somatostatin receptor 4, the THBD gene for
             thrombomodulin, two novel genes and two CpG islands,
             complete sequence
          Length = 97912

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   tctcaaagcatctcagtttg 489
             ||||||||||||||||||||
Sbjct: 33191 tctcaaagcatctcagtttg 33172
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>emb|CR380949.1| Candida glabrata strain CBS138 chromosome C complete sequence
          Length = 558804

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 165    ttgtcagctcaattagctgcaagattaa 192
              ||||||||||  ||||||||||||||||
Sbjct: 460642 ttgtcagctctcttagctgcaagattaa 460615
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>emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 9/10
          Length = 349115

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    acctgttggttggtttggtg 342
              ||||||||||||||||||||
Sbjct: 325836 acctgttggttggtttggtg 325817
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>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 8/10
          Length = 349136

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    acctgttggttggtttggtg 342
              ||||||||||||||||||||
Sbjct: 239896 acctgttggttggtttggtg 239877



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    acctgttggttggtttggtg 342
              ||||||||||||||||||||
Sbjct: 231030 acctgttggttggtttggtg 231011
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>emb|BX927148.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 1/10
          Length = 348071

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   acctgttggttggtttggtg 342
             ||||||||||||||||||||
Sbjct: 81729 acctgttggttggtttggtg 81748
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>emb|CR376736.5| Zebrafish DNA sequence from clone DKEYP-86G11 in linkage group 24,
             complete sequence
          Length = 204538

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    ctaagcatcaaagaggacac 55
             ||||||||||||||||||||
Sbjct: 13590 ctaagcatcaaagaggacac 13609
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>emb|CR387929.4| Zebrafish DNA sequence from clone DKEY-172H18 in linkage group 5,
              complete sequence
          Length = 245364

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    gccaattcatacgagattat 293
              ||||||||||||||||||||
Sbjct: 213813 gccaattcatacgagattat 213832
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 411     tatgccggtgccgggattgt 430
               ||||||||||||||||||||
Sbjct: 2404563 tatgccggtgccgggattgt 2404544
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>gb|AC093718.3| Homo sapiens 12 BAC RP11-742C6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160904

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    aagaagaagcttgagatgat 103
             ||||||||||||||||||||
Sbjct: 21951 aagaagaagcttgagatgat 21932
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>gb|AC069549.5| Homo sapiens chromosome 10 clone RP11-575A19, complete sequence
          Length = 170554

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 473    caaagcatctcagtttgcaa 492
              ||||||||||||||||||||
Sbjct: 157642 caaagcatctcagtttgcaa 157661
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>emb|BX511101.3| Zebrafish DNA sequence from clone DKEYP-92F1 in linkage group 2,
             complete sequence
          Length = 81968

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   gccaattcatacgagattat 293
             ||||||||||||||||||||
Sbjct: 24988 gccaattcatacgagattat 24969
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>gb|AC144407.2| Homo sapiens chromosome 8, clone XXfos-800816B5, complete sequence
          Length = 34904

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 20    tggccggnatttgcttctaagca 42
             ||||||| |||||||||||||||
Sbjct: 11883 tggccggcatttgcttctaagca 11861
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>gb|AC142398.2| Homo sapiens chromosome 8, clone XXfos-87101G1, complete sequence
          Length = 43668

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 20    tggccggnatttgcttctaagca 42
             ||||||| |||||||||||||||
Sbjct: 42097 tggccggcatttgcttctaagca 42075
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>gb|AF314192.1|AF314192 Corynebacterium glutamicum rrnE operon, complete sequence
          Length = 5631

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 323  acctgttggttggtttggtg 342
            ||||||||||||||||||||
Sbjct: 5467 acctgttggttggtttggtg 5486
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>gb|AC021079.4|AC021079 Homo sapiens chromosome 5 clone CTC-202C8, complete sequence
          Length = 109321

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    aagaagaagcttgagatgat 103
             ||||||||||||||||||||
Sbjct: 81696 aagaagaagcttgagatgat 81677
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 88      agaagcttgagatgatatgt 107
               ||||||||||||||||||||
Sbjct: 2873984 agaagcttgagatgatatgt 2874003
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 323     acctgttggttggtttggtg 342
               ||||||||||||||||||||
Sbjct: 3146116 acctgttggttggtttggtg 3146097



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 323     acctgttggttggtttggtg 342
               ||||||||||||||||||||
Sbjct: 2712724 acctgttggttggtttggtg 2712705



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 323     acctgttggttggtttggtg 342
               ||||||||||||||||||||
Sbjct: 2703857 acctgttggttggtttggtg 2703838



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   acctgttggttggtttggtg 342
             ||||||||||||||||||||
Sbjct: 81728 acctgttggttggtttggtg 81747
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>gb|AC108130.3| Homo sapiens chromosome 5 clone RP11-84B12, complete sequence
          Length = 159922

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     aagaagaagcttgagatgat 103
              ||||||||||||||||||||
Sbjct: 131111 aagaagaagcttgagatgat 131130
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>gb|AC007661.2|AC007661 Arabidopsis thaliana chromosome II section 205 of 255 of the complete
             sequence. Sequence from clones F13M22, T8P21, F16M14
          Length = 95612

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 582   gagattacaatgcttagaaa 601
             ||||||||||||||||||||
Sbjct: 95310 gagattacaatgcttagaaa 95291
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>dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0030H07
          Length = 168253

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    agaagcttgagatgatatgt 107
             ||||||||||||||||||||
Sbjct: 80982 agaagcttgagatgatatgt 81001
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>emb|AL391703.9| Human DNA sequence from clone RP11-422P8 on chromosome 1 Contains the
             5' end of the GNG12 gene for guanine nucleotide binding
             protein (G protein), gamma 12, the 5' end of a novel gene
             (FLJ38762, FLJ42034) and a CpG island, complete sequence
          Length = 191741

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 601   agagggaagttttgatttgatgggaaga 628
             |||||||| || ||||||||||||||||
Sbjct: 41135 agagggaaattatgatttgatgggaaga 41108
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>gb|AC102485.25| Mus musculus chromosome 5, clone RP24-469G19, complete sequence
          Length = 168799

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    ggaaacttccaagagtacaa 161
              ||||||||||||||||||||
Sbjct: 137518 ggaaacttccaagagtacaa 137537
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>emb|AL929535.6| Zebrafish DNA sequence from clone CH211-151O1, complete sequence
          Length = 162436

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 327   gttggttggtttggtggggctgaa 350
             ||||||||||||||| ||||||||
Sbjct: 14989 gttggttggtttggttgggctgaa 15012


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,914,330
Number of Sequences: 3902068
Number of extensions: 6914330
Number of successful extensions: 121135
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120919
Number of HSP's gapped (non-prelim): 216
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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