ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal12o03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KNAT3_ARATH (P48000) Homeobox protein knotted-1-like 3 (KNAT3) 30 1.9
2LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-bind... 29 4.1
3GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 29 4.1
4FUSB_BURCE (P24127) Fusaric acid resistance protein fusB 28 7.1
5PURL_BARQU (Q6FZI9) Phosphoribosylformylglycinamidine synthase I... 28 9.2

>KNAT3_ARATH (P48000) Homeobox protein knotted-1-like 3 (KNAT3)|
          Length = 431

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -1

Query: 196 SSSSTATNSRPTASASSKWLARSLLCFCMQFLEQRQQIALGELGDAVDVRDDLLGGVE 23
           +SSS + +S   A+A+++WL+RS       FL++        +GD +   DD+ GG +
Sbjct: 75  ASSSDSPSSAAAAAAANQWLSRS-----SSFLQRNNNNNASIVGDGI---DDVTGGAD 124



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>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3|
            precursor (LTBP-3)
          Length = 1268

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 141  GWLDHCSVFVCSFWSSGSKSRLANSAMRSTSG 46
            GW DHC ++ C  +SS     L     R  SG
Sbjct: 944  GWGDHCEIYPCPVYSSAEFHSLVPDGKRLHSG 975



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>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 11  RFAALDAAKEVIPDVDRIAEFAK 79
           RFAA  AAK V+PD +++ +F +
Sbjct: 201 RFAAHPAAKRVLPDTEKVVQFTR 223



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>FUSB_BURCE (P24127) Fusaric acid resistance protein fusB|
          Length = 142

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 111 CSFWSSGSKSRLANSAMRSTSGMTSLAASSAAKRPR 4
           CS W S   SR A  A R+T+     A+ S A RPR
Sbjct: 107 CSCWRSPCGSRCAPPAPRATATSAVTASCSPAIRPR 142



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>PURL_BARQU (Q6FZI9) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 736

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = -1

Query: 226 GTEGVLCILISSSSTATNSRPTASASSKWLARSLLCFCMQFLEQRQQIALGELGDA 59
           G  G +      + +    RPT      ++ + LL  C++ +E +  +A+ ++G A
Sbjct: 218 GVGGAMMASAEFNDSIDEKRPTVQVGDPFIEKCLLEACLELMELKAIVAIQDMGAA 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,453,002
Number of Sequences: 219361
Number of extensions: 950821
Number of successful extensions: 2369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2368
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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