>YDQ4_SCHPO (O14197) Hypothetical protein C5D6.04 in chromosome I|
          Length = 452

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 22/88 (25%), Positives = 47/88 (53%)
 Frame = +2

Query: 56  SVLSMLKYAVLPIAKVFTVCFMGFLMATKYVNILQPNGRKLLNGLVFSLLLPCLIFSQLG 235
           +V S+L+  +    +V  +   G+++A K    L  + +K+++ L      PCL+F ++G
Sbjct: 11  NVWSLLRPIIESDLEVIVIALGGYVLAKK--GFLPRDAQKVISSLNVYFFTPCLVFEKVG 68

Query: 236 SAITLEKLVQWWYIPVNIVVGAVSGSLI 319
           + + L+ L+    +PV  V+ + +  LI
Sbjct: 69  NGLNLKMLIDLSLLPVFYVIISAASILI 96

>YL152_YEAST (P54072) Protein YLR152C|
          Length = 576

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 18/56 (32%), Positives = 36/56 (64%)
 Frame = +2

Query: 80  AVLPIAKVFTVCFMGFLMATKYVNILQPNGRKLLNGLVFSLLLPCLIFSQLGSAIT 247
           A+ PI K++T+  +G+L+A    +I+     K ++ +V + +LPCL F+++ S I+
Sbjct: 12  ALKPIFKIYTIMLVGYLVAK--FDIVSMENAKGISNMVVNAILPCLTFNKIVSNIS 65

>YB8B_YEAST (P38355) Protein YBR287W|
          Length = 427

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = +2

Query: 50  DTSVLSMLKYAVLP-IAKVFTVCFMGFLMATKYVNILQPNGRKLLNGLVFSLLLPCLIFS 226
           +T   + L Y V   + +V  +   GF  A+    +L    +K+++ L   L  PCLIFS
Sbjct: 3   ETFSFAHLAYLVFESVLQVVIIALAGFWSASS--GLLPKQSQKIISLLNVDLFTPCLIFS 60

Query: 227 QLGSAITLEKLVQWWYIPV 283
           +L  ++++ K+ +   IP+
Sbjct: 61  KLAKSLSMAKIFEIAIIPI 79

>YNJ5_YEAST (P53932) Hypothetical 71.2 kDa protein in RPS7B-YPT53 intergenic|
           region
          Length = 642

 Score = 35.0 bits (79), Expect = 0.047
 Identities = 17/51 (33%), Positives = 33/51 (64%)
 Frame = +2

Query: 80  AVLPIAKVFTVCFMGFLMATKYVNILQPNGRKLLNGLVFSLLLPCLIFSQL 232
           +V PI K++ +  +GFLMA   + IL     ++++ +V ++LLP L F+++
Sbjct: 13  SVKPIIKIYLIIGVGFLMAK--MGILTVEATRIISDIVLTVLLPSLSFNKI 61

>ECM3_YEAST (Q99252) Extracellular matrix protein 3|
          Length = 613

 Score = 34.3 bits (77), Expect = 0.081
 Identities = 16/51 (31%), Positives = 32/51 (62%)
 Frame = +2

Query: 80  AVLPIAKVFTVCFMGFLMATKYVNILQPNGRKLLNGLVFSLLLPCLIFSQL 232
           +V PI K++ +  +GF +    +NIL     + ++ +V ++LLPCL F+++
Sbjct: 13  SVRPIIKIYLIIGVGFGLCK--MNILTVQATRSISDIVLTILLPCLSFNKI 61

>Y576_METJA (Q57996) Hypothetical protein MJ0576|
          Length = 347

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 191 VFSLLLPCLIFSQLGSAITLEKLVQWWYIP-VNIVVGAVSGSLI 319
           +FSL++P  +F     +I L+ +   WYIP V ++V  ++GSLI
Sbjct: 126 LFSLIVPFYMFKS--ESIKLDHVNPGWYIPPVGLIVIPIAGSLI 167

>Y762_METJA (Q58172) Hypothetical protein MJ0762|
          Length = 342

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 191 VFSLLLPCLIFSQLGSAITLEKLVQWWYIP-VNIVVGAVSGSLI 319
           +FSL++P  +F     +I L+ +   WYIP V ++V  ++GSLI
Sbjct: 119 LFSLIVPFYMFKS--ESIKLDHVNPGWYIPPVGLIVIPIAGSLI 160

>VGLM_HANTH (P16493) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1134

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 8   CMEALVTAAQGGSTDTSVLSMLKYAVLPIAKVFTVCFMGFLMATKY 145
           CM  ++   +    D SV+S++K+ +  IA V  VCF   +    Y
Sbjct: 175 CMTGVLIEGKCFVPDQSVVSIIKHGIFDIASVHIVCFFVAVKGNTY 220

>VGLM_HANTV (P08668) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1135

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 8   CMEALVTAAQGGSTDTSVLSMLKYAVLPIAKVFTVCFMGFLMATKY 145
           CM  ++   +    D SV+S++K+ +  IA V  VCF   +    Y
Sbjct: 175 CMTGVLIEGKCFVPDQSVVSIIKHGIFDIASVHIVCFFVAVKGNTY 220

>VGLM_HANTL (P16853) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1135

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 8   CMEALVTAAQGGSTDTSVLSMLKYAVLPIAKVFTVCFMGFLMATKY 145
           CM  ++   +    D SV+S++K+ +  IA V  VCF   +    Y
Sbjct: 175 CMTGVLIEGKCFVPDQSVVSIIKHGIFDIASVHIVCFFVAVKGNTY 220

>VGLM_HANTB (P28728) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1133

 Score = 26.9 bits (58), Expect(2) = 2.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 8   CMEALVTAAQGGSTDTSVLSMLKYAVLPIAKVFTVCFMGFLMATKY 145
           C   ++T  +    D +V+S LK  +  IA + T+CF       KY
Sbjct: 173 CTTGILTEGKCFVPDKAVVSALKRGMYAIASIETICFFIHQKWNKY 218



 Score = 20.8 bits (42), Expect(2) = 2.6
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 190 CVLASTSLPYIFPTGQRDHSREVGAVVVYS 279
           C++   S P   P G+   + EV + ++ S
Sbjct: 245 CIIGGNSAPVYAPAGEDFRAMEVFSGIITS 274

>Y1031_METJA (Q58437) Hypothetical protein MJ1031|
          Length = 308

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +2

Query: 137 TKYVNILQPNGRKLLNGLVFSLLLPCLIFSQLGSAITLEKLVQWWYIPVNI 289
           +K   IL+    K+LN +V  + +P  IF  +   ++  +++++  +PV I
Sbjct: 20  SKIFGILKEEHAKILNNIVIYIAMPSTIFLTISKNVSSSQILEFLKLPVVI 70

>MNDA_MACFA (Q8SPH9) Myeloid cell nuclear differentiation factor|
          Length = 407

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -2

Query: 168 PLGWRMLTYLVAMRKPMKQTVKTLAMGSTAYLSMESTEVSVEP--PCAAVTSASIQRP 1
           P     LT  V  R P+ Q  KTL+ G T    ++  +   EP  P  A TSA+   P
Sbjct: 116 PTARNTLTSEVGERIPVAQKRKTLSKGKTEAKRIKVPQEQSEPPHPSGASTSAATDHP 173

>VME1_IBVBU (Q91QS9) E1 glycoprotein (Matrix glycoprotein) (Membrane|
           glycoprotein)
          Length = 225

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +2

Query: 173 KLLNGLVFSLLLPCLIFSQLGSAI------TLEKLVQWWYIPVNIVVGAVS 307
           K  N  + + LL   I  Q G A       TL+ +V W + P+NI VG +S
Sbjct: 19  KEYNLFITAFLLFLTIILQYGYATRTKVIYTLKMIVLWCFWPLNIAVGVIS 69

>VME1_IBVBC (P69602) E1 glycoprotein (Matrix glycoprotein) (Membrane|
           glycoprotein)
          Length = 225

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +2

Query: 173 KLLNGLVFSLLLPCLIFSQLGSAI------TLEKLVQWWYIPVNIVVGAVS 307
           K  N  + + LL   I  Q G A       TL+ +V W + P+NI VG +S
Sbjct: 19  KEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNIAVGVIS 69

>VME1_IBVB2 (P11222) E1 glycoprotein (Matrix glycoprotein) (Membrane|
           glycoprotein)
          Length = 225

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +2

Query: 173 KLLNGLVFSLLLPCLIFSQLGSAI------TLEKLVQWWYIPVNIVVGAVS 307
           K  N  + + LL   I  Q G A       TL+ +V W + P+NI VG +S
Sbjct: 19  KEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNIAVGVIS 69

>VME1_IBVB (P69601) E1 glycoprotein (Matrix glycoprotein) (Membrane|
           glycoprotein)
          Length = 225

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +2

Query: 173 KLLNGLVFSLLLPCLIFSQLGSAI------TLEKLVQWWYIPVNIVVGAVS 307
           K  N  + + LL   I  Q G A       TL+ +V W + P+NI VG +S
Sbjct: 19  KEYNLFITAFLLFLTIILQYGYATRSKVIYTLKMIVLWCFWPLNIAVGVIS 69

>YJ92_YEAST (P47158) Hypothetical 57.1 kDa protein in ATP2-RPS5 intergenic|
           region
          Length = 497

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 143 YVNILQPNGRKLLNGLVFSLLLPCLIFSQL 232
           Y+ I  P+  K LNGLV S LLP  I   L
Sbjct: 55  YIRIRGPDTVKFLNGLVTSKLLPHFIKKNL 84

>DZIP1_MOUSE (Q8BMD2) Zinc finger protein DZIP1 (DAZ-interacting protein 1|
           homolog)
          Length = 852

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 320 QSRIQTRHLQQYLLEYTTTAPTSR 249
           QS IQ RH +   LEY T A T R
Sbjct: 199 QSHIQRRHTEDSHLEYNTKAQTDR 222

>VME1_IBV6 (P05136) E1 glycoprotein (Matrix glycoprotein) (Membrane|
           glycoprotein)
          Length = 225

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +2

Query: 173 KLLNGLVFSLLLPCLIFSQLGSAIT------LEKLVQWWYIPVNIVVGAVS 307
           K  N  V + LL   I  Q G A        L+ +V W + P+NI VGA+S
Sbjct: 19  KEYNLFVTAFLLFLTILLQYGYATRNKVIYILKMIVLWCFWPLNIAVGAIS 69

>WDR1_XENLA (Q9W7F2) WD-repeat protein 1 (Actin-interacting protein 1) (XAIP1)|
          Length = 608

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 120 MKQTVKTLAMGSTAYLSMESTEVSVEPPCAAVTS 19
           M  T++  ++ S  Y S ES ++ V+P C AV S
Sbjct: 384 MDDTLRYTSLISKDYSSSESVKMDVQPKCVAVGS 417


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,536,058
Number of Sequences: 219361
Number of extensions: 643049
Number of successful extensions: 2526
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2525
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)