ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal13c21 |
|---|---|
| Clone Library Name | barley_pub |
>YTZC_BACSU (O32073) Hypothetical protein ytzC| Length = 90 Score = 31.6 bits (70), Expect = 1.5 Identities = 13/62 (20%), Positives = 33/62 (53%) Frame = +3 Query: 153 VEKLQQIHEVANDEAKMLFDKQHFGKHHAVQSVLKLEDEIKKVYKSFLLANEYQSSKLCE 332 +++ Q ++ A ++ K+ ++H+ + ++LED + + K +L +N+ Q +L Sbjct: 11 LQQCMQAYDYAEEQLKIASKQEHYNDQEYSDAQMQLEDAVNALNKLWLSSNDQQREQLYR 70 Query: 333 AR 338 R Sbjct: 71 MR 72
>LC7L2_MOUSE (Q7TNC4) Putative RNA-binding protein Luc7-like 2 (CGI-74 homolog)| Length = 392 Score = 31.6 bits (70), Expect = 1.5 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 15/94 (15%) Frame = +3 Query: 96 ERCLKVYKEKLEGLGLPVPVE---KLQQIHEVANDEAKMLFDKQHFGKHHAVQSVLKLED 266 +R +V K++L + E K +++HE+ + K+L + G V+ K+ D Sbjct: 98 DRRTEVSKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMD 157 Query: 267 EIKK----------VYKSFLLANEYQSSKL--CE 332 E++K VY++ + A+ +Q KL CE Sbjct: 158 EVEKARAKKREAEEVYRNSMPASSFQQQKLRVCE 191
>LC7L2_HUMAN (Q9Y383) Putative RNA-binding protein Luc7-like 2| Length = 392 Score = 31.6 bits (70), Expect = 1.5 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 15/94 (15%) Frame = +3 Query: 96 ERCLKVYKEKLEGLGLPVPVE---KLQQIHEVANDEAKMLFDKQHFGKHHAVQSVLKLED 266 +R +V K++L + E K +++HE+ + K+L + G V+ K+ D Sbjct: 98 DRRTEVAKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMD 157 Query: 267 EIKK----------VYKSFLLANEYQSSKL--CE 332 E++K VY++ + A+ +Q KL CE Sbjct: 158 EVEKARAKKREAEEVYRNSMPASSFQQQKLRVCE 191
>SYA_MESFL (Q6F0K3) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 892 Score = 30.4 bits (67), Expect = 3.4 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Frame = +3 Query: 84 KAILER---CLKVYKEKLEGLGLPVPVEKLQQIHEVANDEAKMLFDKQHFGKHHAVQSVL 254 K ILE+ LK+Y+ K+E L +E+ + + ND+ ++Q G + ++ + Sbjct: 770 KLILEKLSAALKIYERKIEDLLTSKKLEQFKAFEPITNDKGVGTIEQQVNGLN--IKDMK 827 Query: 255 KLEDEIKKVYKSFLL 299 L DE K ++ ++ Sbjct: 828 NLVDEYKNKFEKLII 842
>T2FA_HUMAN (P35269) Transcription initiation factor IIF alpha subunit (EC| 2.7.11.1) (TFIIF-alpha) (Transcription initiation factor RAP74) (General transcription factor IIF polypeptide 1 74 kDa subunit protein) Length = 517 Score = 30.4 bits (67), Expect = 3.4 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +3 Query: 105 LKVYKEKLEGLGLPVPVEKLQQIHEVANDEAKMLFDKQHF 224 LK ++ K GL V L QI + N E KM+ DK HF Sbjct: 474 LKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHF 513
>POLG_HRV1A (P23008) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D)] (Fragments) Length = 832 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -2 Query: 246 TVQHDAYQSAVYQRAFWLHHLPPHEFAAVSPPVQVDLS 133 T+ D +AV W H+L P + A++ P Q D S Sbjct: 66 TISSDDVANAVVGYGVWPHYLTPQDATAINKPTQPDTS 103
>DRL22_ARATH (Q9LW09) Putative disease resistance protein At3g15700| Length = 375 Score = 29.6 bits (65), Expect = 5.8 Identities = 21/79 (26%), Positives = 34/79 (43%) Frame = +3 Query: 84 KAILERCLKVYKEKLEGLGLPVPVEKLQQIHEVANDEAKMLFDKQHFGKHHAVQSVLKLE 263 K+++ RC+ V KE L E+L+ + + KM D+Q + VQ L+ Sbjct: 6 KSMVTRCIYVGKENDNVKKLKTATEELKDLRNIVMKRVKMYEDQQKLKRLEKVQVWLRQA 65 Query: 264 DEIKKVYKSFLLANEYQSS 320 D K + L+ SS Sbjct: 66 DVAIKEAEEMLITLMSSSS 84
>C_PI3H4 (P06165) Protein C (VP18 protein)| Length = 199 Score = 29.6 bits (65), Expect = 5.8 Identities = 20/79 (25%), Positives = 38/79 (48%) Frame = +3 Query: 225 GKHHAVQSVLKLEDEIKKVYKSFLLANEYQSSKLCEARFSECEDQMDHLQVLKLPSMAKF 404 G H VQ K+E I+K+Y+ L +++++ E R E+ ++ Q+LK+ + Sbjct: 83 GHHTNVQQKQKIEILIRKLYREDL---GEEAAQIVELRLWSLEESLEASQILKMEPKTRR 139 Query: 405 NAGFFLLQSDVCNRMRGAC 461 L+ + +RG C Sbjct: 140 ILISMKLERWIRTLLRGKC 158
>KITH_LACJO (Q74K26) Thymidine kinase (EC 2.7.1.21)| Length = 199 Score = 29.3 bits (64), Expect = 7.6 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +3 Query: 195 AKMLFDKQHFGKHHAVQSVLKLEDEIKKVYKSFLLANEYQS 317 A +L D+ F K H V K+ DE+K +F L N++Q+ Sbjct: 88 ACVLIDEAQFLKRHHVLECAKIVDELKIPVMAFGLKNDFQN 128
>PQQE_PSEAE (Q9I2C0) Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone| biosynthesis protein E) Length = 381 Score = 28.9 bits (63), Expect = 9.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 3 CPFCSXILEALNKGEIPSTGSLVEIFNKA 89 CP+CS LE +G ST +E+F +A Sbjct: 30 CPYCSNPLEFAREGAELSTAEWIEVFRQA 58
>CDC63_SULTO (Q96YK7) Cell division control protein 6 homolog 3 (CDC6 homolog 3)| Length = 386 Score = 28.9 bits (63), Expect = 9.9 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = +3 Query: 237 AVQSVLKLEDEIK--KVYKSFLLANEYQSSKLCEARFSECEDQMDHLQVLKLPSMAKFNA 410 A+ + + ED + K+Y L N+Y+ L RFS+ ++D ++K+ + K A Sbjct: 298 ALMATMDAEDVVTAHKIYSD--LCNQYKQKPLSYRRFSDIISELDMFGIIKVKIINKGRA 355 Query: 411 G 413 G Sbjct: 356 G 356
>BRE1_DEBHA (Q6BWW6) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 691 Score = 28.9 bits (63), Expect = 9.9 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 10/102 (9%) Frame = +3 Query: 156 EKLQQIHEVANDEAKMLFDKQH----------FGKHHAVQSVLKLEDEIKKVYKSFLLAN 305 ++L ++++V N+ L ++H K +Q + L EIK++ ++F Sbjct: 395 DELNKLNKVLNERINALESERHETGDNSKISELSKDELIQRINMLNSEIKEIEQAFQETR 454 Query: 306 EYQSSKLCEARFSECEDQMDHLQVLKLPSMAKFNAGFFLLQS 431 E SKL ++ E+ + L + K + K+ A L S Sbjct: 455 ENSLSKLMSV--TDQENMVKKLTIEKTKADQKYFASMRLKDS 494
>ARFM_ARATH (Q9FX25) Putative auxin response factor 13| Length = 623 Score = 28.9 bits (63), Expect = 9.9 Identities = 18/41 (43%), Positives = 23/41 (56%) Frame = -1 Query: 139 PKPSSFSLYTFRQRSRIALLKISTRDPVDGISPLFKASSXL 17 PKP +Y F Q I L++ STRD +D I P+F S L Sbjct: 40 PKPGE-KVYYFPQ-GHIELIENSTRDELDHIRPIFDLPSKL 78
>SECA_AQUAE (O67718) Preprotein translocase secA subunit| Length = 984 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 45 EIPSTGSLVEIFNKAILERCLKVYKEKLEGLGLPVPVEKLQQI 173 EIP E+ K + E LK+Y+EK + +G P + +L+++ Sbjct: 813 EIPQVRDKEELIQK-LYEELLKIYEEKEKEIGSPEAMRELERV 854
>MRAW_THETN (Q8R9F9) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 308 Score = 28.9 bits (63), Expect = 9.9 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Frame = +3 Query: 21 ILEALNKGEIPSTGSLVEIFNKAILERCLKV----YKEKLEGLGLPVPVEKLQQIHEVAN 188 I+E KG+I +T LVEI KAI + K + + + V E+L+ + Sbjct: 166 IVEERKKGDIKTTSQLVEIIKKAIPASARRTGPHPAKRTFQAIRIEVN-EELKDLDRALE 224 Query: 189 DEAKMLFDKQHFGKHHAVQSVLKLEDEIKK 278 D ++L K AV + LED I K Sbjct: 225 DMVEVLRGKGRI----AVITFHSLEDRIVK 250 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,362,944 Number of Sequences: 219361 Number of extensions: 1582280 Number of successful extensions: 4576 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4379 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4573 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
