Clone Information

BLAST Search Result

Clone Name	baal13c12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor	42	0.001
2	NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr...	37	0.051
3	NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr...	37	0.051
4	NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot...	37	0.051
5	NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr...	37	0.051
6	KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precu...	36	0.088
7	KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precu...	36	0.11
8	KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precu...	36	0.11
9	CUT_DROME (P10180) Homeobox protein cut	35	0.15
10	NONA_DROLR (Q9GRX4) Protein no-on-transient A	35	0.20
11	NONA_DROVI (Q9GRW7) Protein no-on-transient A	35	0.20
12	HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)	34	0.33
13	OVO_DROME (P51521) Protein ovo (Protein shaven baby)	34	0.43
14	PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein	34	0.43
15	SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1	33	0.74
16	SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1	33	0.74
17	SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1	33	0.74
18	SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pr...	33	0.74
19	SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1	33	0.74
20	DISC_DROME (P23792) Protein disconnected	33	0.97
21	SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9	33	0.97
22	SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pr...	33	0.97
23	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	33	0.97
24	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	33	0.97
25	SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1	33	0.97
26	SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-lik...	33	0.97
27	SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9	33	0.97
28	YLH3_SCHPO (Q9HGQ3) Hypothetical transport protein C17D4.03c in ...	32	1.3
29	UAP2_SCHPO (O43120) Splicing factor U2AF-associated protein 2	32	1.7
30	NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific pro...	32	2.2
31	HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h...	32	2.2
32	HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2...	32	2.2
33	HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hn...	32	2.2
34	CORTO_DROME (P41046) Centrosomal and chromosomal factor (CCF) (C...	32	2.2
35	SGN1_YEAST (P40561) RNA-binding protein SGN1	32	2.2
36	RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-ri...	32	2.2
37	PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2)	32	2.2
38	PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kD...	32	2.2
39	PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kD...	32	2.2
40	HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ...	32	2.2
41	HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ...	32	2.2
42	HRP3_PLAFS (P14586) Histidine-rich protein	32	2.2
43	SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2	31	2.8
44	IF34_CAEEL (Q19706) Probable eukaryotic translation initiation f...	31	2.8
45	FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related ...	31	2.8
46	FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related ...	31	2.8
47	FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related ...	31	2.8
48	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	31	2.8
49	FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related pr...	31	2.8
50	ISPG_THETH (Q84GJ3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ...	31	2.8
51	ISPG_THET8 (Q5SLI8) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ...	31	2.8
52	ISPG_THET2 (Q72H18) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ...	31	2.8
53	SXL_CHRRU (O97018) Sex-lethal homolog	31	3.7
54	SXL_MUSDO (O17310) Sex-lethal homolog	31	3.7
55	PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein	31	3.7
56	LRCH1_HUMAN (Q9Y2L9) Leucine-rich repeats and calponin homology ...	31	3.7
57	GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein ...	31	3.7
58	AHM1_ARATH (Q9M3H5) Putative cadmium/zinc-transporting ATPase HM...	30	4.8
59	ZN281_HUMAN (Q9Y2X9) Zinc finger protein 281 (Zinc finger DNA-bi...	30	4.8
60	STAR_DROME (P42519) Protein Star	30	4.8
61	HSH49_YEAST (Q99181) Protein HSH49	30	4.8
62	WHI3_YEAST (P34761) Protein WHI3	30	4.8
63	HPN_HELPY (P0A0V6) Histidine-rich metal-binding polypeptide	30	4.8
64	HPN_HELPJ (P0A0V7) Histidine-rich, metal binding polypeptide	30	4.8
65	ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2	30	6.3
66	ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	30	6.3
67	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	30	6.3
68	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	30	6.3
69	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	30	6.3
70	KAS2_STRHA (Q05357) Putative polyketide beta-ketoacyl synthase 2...	30	6.3
71	FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription fact...	30	6.3
72	PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...	30	6.3
73	ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	30	6.3
74	BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)	30	6.3
75	SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1	30	6.3
76	PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neura...	30	8.2
77	PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Bra...	30	8.2
78	PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neu...	30	8.2
79	VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contai...	30	8.2
80	ZEN_DROSU (Q24648) Protein zerknuellt	30	8.2
81	NRP1_YEAST (P32770) Asparagine-rich protein (Protein ARP)	30	8.2
82	CLCB_ECO57 (Q8X794) Voltage-gated ClC-type chloride channel clcB	30	8.2
83	PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein	30	8.2

>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor|
          Length = 351

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 23/78 (29%), Positives = 27/78 (34%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAG 317
           H   +HH+ HH           H      HH      HH   H  A   HH+HHH     
Sbjct: 176 HHHHHHHAPHH--------HHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHH----- 222

Query: 316 LLAPLGHRHYMGSEVGHH 263
                GH H+     GHH
Sbjct: 223 -----GHHHHHHHHHGHH 235



 Score = 41.2 bits (95), Expect = 0.003
 Identities = 36/147 (24%), Positives = 44/147 (29%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAG 317
           H    HH  HH        +  H  +   HH     EHH   HP     HH+HHH     
Sbjct: 64  HHPEEHHEPHH--------EEHHHHHPEEHHEPHHEEHHHH-HPHP---HHHHHH----- 106

Query: 316 LLAPLGHRHYMGSEVGHHSLVGKSLDRCHSC*GVALQTLNCTHCCLHRNLGAVRNHLEDR 137
              P  H H++G    HH          H                 H +     +H E  
Sbjct: 107 --HPPHHHHHLGHHHHHHHAAHHHHHEEHH---------------HHHHAAHHHHHEEHH 149

Query: 136 HRMEGL*GEPVHSHRHLGCSLGLFPHN 56
           H        P   H HLG      PH+
Sbjct: 150 HHHHAAHHHPWFHHHHLGYHHHHAPHH 176



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 22/74 (29%), Positives = 30/74 (40%)
 Frame = -2

Query: 484 NHHSLHHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAGLLAP 305
           +HH+ HH        +  H  ++  HH      HHL  H      HH+HHH       AP
Sbjct: 136 HHHAAHHHH-----HEEHHHHHHAAHHHPWFHHHHLGYHHHHAPHHHHHHHH------AP 184

Query: 304 LGHRHYMGSEVGHH 263
             H H+  +   HH
Sbjct: 185 HHHHHHHHAPHHHH 198



 Score = 38.5 bits (88), Expect = 0.018
 Identities = 25/83 (30%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRH-----HLDKVVEHHLRLHPQAQTEHHNHHH 332
           H    HH  HH A         HL  +  H     H      HH   H  A   HH+HHH
Sbjct: 143 HHHEEHHHHHHAAHHHPWFHHHHLGYHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHH 202

Query: 331 M*VAGLLAPLGHRHYMGSEVGHH 263
                  AP  H H+  +   HH
Sbjct: 203 -------APHHHHHHHHAPHHHH 218



 Score = 38.1 bits (87), Expect = 0.023
 Identities = 20/78 (25%), Positives = 26/78 (33%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAG 317
           H   +HH+ HH           H   +  HH      HH   H      HH+HHH     
Sbjct: 206 HHHHHHHAPHH--------HHHHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHH----- 252

Query: 316 LLAPLGHRHYMGSEVGHH 263
                 H H+   +  HH
Sbjct: 253 ---DAHHHHHHHHDAHHH 267



 Score = 37.4 bits (85), Expect = 0.039
 Identities = 20/78 (25%), Positives = 25/78 (32%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAG 317
           H   +HH  HH           H   +  HH      HH   H  A   HH+HH      
Sbjct: 256 HHHHHHHDAHHH-------HHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHD----- 303

Query: 316 LLAPLGHRHYMGSEVGHH 263
                 H H+   +  HH
Sbjct: 304 -----AHHHHHHHDAHHH 316



 Score = 37.0 bits (84), Expect = 0.051
 Identities = 20/78 (25%), Positives = 25/78 (32%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAG 317
           H   +HH  HH           H  +   HH      HH   H  A   HH+HH      
Sbjct: 286 HHHHHHHDAHH--------HHHHHHDAHHHHHHHDAHHHHHHHHDAHHHHHHHH------ 331

Query: 316 LLAPLGHRHYMGSEVGHH 263
                 H H+   +  HH
Sbjct: 332 ---DAHHHHHHHHDAHHH 346



 Score = 36.2 bits (82), Expect = 0.088
 Identities = 20/78 (25%), Positives = 26/78 (33%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAG 317
           H   +HH  HH           H  ++  HH      HH   H  A   HH+HH      
Sbjct: 226 HHHHHHHGHHHH-------HHHHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHHH------ 272

Query: 316 LLAPLGHRHYMGSEVGHH 263
                 H H+   +  HH
Sbjct: 273 ---DAHHHHHHHHDAHHH 287



 Score = 34.7 bits (78), Expect = 0.25
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHH 335
           H   +HH  HH           H   +  HH      HH   H  A   HH+HH
Sbjct: 305 HHHHHHHDAHHH-------HHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHH 351



 Score = 32.7 bits (73), Expect = 0.97
 Identities = 31/131 (23%), Positives = 39/131 (29%)
 Frame = -2

Query: 481 HHSLHHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAGLLAPL 302
           HH  HH   P    +  H +++  H       HH   H      HH+HHH          
Sbjct: 73  HHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHLGHHHHHH--------HA 124

Query: 301 GHRHYMGSEVGHHSLVGKSLDRCHSC*GVALQTLNCTHCCLHRNLGAVRNHLEDRHRMEG 122
            H H+      HH          H     A       H   H +LG   +H    H    
Sbjct: 125 AHHHHHEEHHHHHHAAHHHHHEEHHHHHHAAHHHPWFH---HHHLGYHHHHAPHHHHHHH 181

Query: 121 L*GEPVHSHRH 89
               P H H H
Sbjct: 182 --HAPHHHHHH 190



 Score = 30.8 bits (68), Expect = 3.7
 Identities = 20/78 (25%), Positives = 26/78 (33%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAG 317
           H   +HH+ HH           H  ++  HH      HH   H      H +HHH     
Sbjct: 196 HHHHHHHAPHH----------HHHHHHAPHHHH---HHHHGHHHHHHHHHGHHHH----- 237

Query: 316 LLAPLGHRHYMGSEVGHH 263
                 H H+ G    HH
Sbjct: 238 ------HHHHHGHHHHHH 249

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>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 37.0 bits (84), Expect = 0.051
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI 585
           R+++ NLPPD+T EE+++LF   G+ G +
Sbjct: 75  RLFVGNLPPDITEEEMRKLFEKYGKAGEV 103

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>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 37.0 bits (84), Expect = 0.051
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI 585
           R+++ NLPPD+T EE+++LF   G+ G +
Sbjct: 75  RLFVGNLPPDITEEEMRKLFEKYGKAGEV 103

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>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 476

 Score = 37.0 bits (84), Expect = 0.051
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI 585
           R+++ NLPPD+T EE+++LF   G+ G +
Sbjct: 80  RLFVGNLPPDITEEEMRKLFEKYGKAGEV 108

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>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 37.0 bits (84), Expect = 0.051
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI 585
           R+++ NLPPD+T EE+++LF   G+ G +
Sbjct: 77  RLFVGNLPPDITEEEMRKLFEKYGKAGEV 105

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>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)|
          Length = 657

 Score = 36.2 bits (82), Expect = 0.088
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRHHLD---KVVEHHLRLHPQAQTEHHNHHH 332
           H   +HH  HH        Q  H  ++  HH +   +  + H ++H Q Q  HH+HHH
Sbjct: 61  HEHHHHHHHHHHHQHQAPHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHH 118



 Score = 34.7 bits (78), Expect = 0.25
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -2

Query: 439 QGQHLQNNRRHHLDKVVEHHLRLHP-QAQTEHHNHHHM*VAGLLAPLGHRHYMGSEVGHH 263
           Q QH  ++  HH      HH    P QA  + H+HHH       AP  H+   G +  HH
Sbjct: 58  QKQHEHHHHHHHH----HHHQHQAPHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHH 113

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>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)|
           (KP)
          Length = 634

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = -2

Query: 418 NRRHHLDKVVEHHLRLHPQAQTEH------HNHHHM*VAGLLAPLGHRHYMGSEVGHH 263
           N+R    K  EHH   H Q Q +H      H+HHH       AP  H+   G +  HH
Sbjct: 52  NKRTLAQKQHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHH 109



 Score = 35.0 bits (79), Expect = 0.20
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRHHLD---KVVEHHLRLHPQAQTEHHNHHH 332
           H   +HH   H        Q  H  ++  HH +   +  + H ++H Q Q  HH+HHH
Sbjct: 63  HHHHHHHQHQHQH------QAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHH 114

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>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)|
           (HRPI) (Fragment)
          Length = 473

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = -2

Query: 418 NRRHHLDKVVEHHLRLHPQAQTEH------HNHHHM*VAGLLAPLGHRHYMGSEVGHH 263
           N+R    K  EHH   H Q Q +H      H+HHH       AP  H+   G +  HH
Sbjct: 52  NKRTLAQKQHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHH 109



 Score = 35.0 bits (79), Expect = 0.20
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -2

Query: 496 HCRRNHHSLHHTA*PL**VQGQHLQNNRRHHLD---KVVEHHLRLHPQAQTEHHNHHH 332
           H   +HH   H        Q  H  ++  HH +   +  + H ++H Q Q  HH+HHH
Sbjct: 63  HHHHHHHQHQHQH------QAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHH 114

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>CUT_DROME (P10180) Homeobox protein cut|
          Length = 2175

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
 Frame = -2

Query: 490 RRNHHSLHHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAGLL 311
           +  H   HH        Q QHL     HHL +        +P +   HH  HH+   GLL
Sbjct: 675 QHQHQQQHH--------QQQHLHQQHHHHLQQQPNSGSNSNPASNDHHHG-HHLHGHGLL 725

Query: 310 APLG--HRHYMGSEVGHHS 260
            P    H H+  +E   +S
Sbjct: 726 HPSSAHHLHHQTTESNSNS 744

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>NONA_DROLR (Q9GRX4) Protein no-on-transient A|
          Length = 698

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI 585
           R+Y+ NL  D+T EEL+E+F   G++G I
Sbjct: 282 RLYVGNLTNDITDEELREMFKPYGEIGEI 310

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>NONA_DROVI (Q9GRW7) Protein no-on-transient A|
          Length = 697

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI 585
           R+Y+ NL  D+T EEL+E+F   G++G I
Sbjct: 286 RLYVGNLTNDITDEELREMFKPYGEIGEI 314

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>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)|
          Length = 535

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQV 576
           R+YI NL  DVT EEL+ELF   G++
Sbjct: 114 RLYIGNLTSDVTEEELKELFSPYGEI 139

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>OVO_DROME (P51521) Protein ovo (Protein shaven baby)|
          Length = 1351

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
 Frame = -2

Query: 577  QPGQFLQKALAVPQQSHQGAGLRCKSLHCRRNHHSLHHTA*PL**V--QGQHLQNNRRHH 404
            Q G + Q+A  + QQ  Q    + +  H ++     H  A     +  Q Q  Q  + H 
Sbjct: 898  QHGGYQQQAAIMSQQQQQLLSQQQQQSHHQQQQQQQHAAAYQQHNIYAQQQQQQQQQHHQ 957

Query: 403  LDKVVEHHLRLHPQAQ----TEHHNHHH 332
              +  +HH   H Q Q      HH+HHH
Sbjct: 958  QQQQQQHHHFHHQQQQQPQPQSHHSHHH 985



 Score = 31.2 bits (69), Expect = 2.8
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = -2

Query: 571  GQFLQKALAVPQQSHQGAGLRCKSLHC-----RRNHHSLHHTA*PL**VQGQHLQNNRRH 407
            G  ++  LAV  ++  G   R +++ C     +  HHS H         QG   Q N + 
Sbjct: 1084 GHGIKNPLAV--ENAHGGHHRIRNIDCIDDLSKHGHHSQHQQQ------QGSPQQQNMQQ 1135

Query: 406  HLDKV-VEHHLRLHPQAQTEHHNHH 335
             + +  V+    L  Q Q +HH HH
Sbjct: 1136 SVQQQSVQQQQSLQQQQQQQHHQHH 1160

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>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein|
          Length = 138

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +YI NLP  +T EE+ E+FG  G V +I+
Sbjct: 21  LYIKNLPYKITTEEMYEIFGKFGAVRQIR 49

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>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1|
          Length = 256

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRG 600
           RIY+ NLPPD+  ++++++F   G +  I  K +RG
Sbjct: 16  RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG 51

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>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1|
          Length = 247

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRG 600
           RIY+ NLPPD+  ++++++F   G +  I  K +RG
Sbjct: 16  RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG 51

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>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1|
          Length = 247

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRG 600
           RIY+ NLPPD+  ++++++F   G +  I  K +RG
Sbjct: 16  RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG 51

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>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing|
           factor SF2, P33 subunit) (Alternative splicing factor
           ASF-1)
          Length = 247

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRG 600
           RIY+ NLPPD+  ++++++F   G +  I  K +RG
Sbjct: 16  RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG 51

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>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1|
          Length = 267

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRG 600
           RIY+ NLPPD+  ++++++F   G +  I  K +RG
Sbjct: 17  RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG 52

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>DISC_DROME (P23792) Protein disconnected|
          Length = 568

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
 Frame = -2

Query: 505 KSLHCRRNHHSLHHTA*PL**VQGQHLQNNRRH----HLDKVVEHHLRLHPQAQTEHHNH 338
           K+ H + NHH           +Q QH Q    H    H  +   HHL  H      HH+H
Sbjct: 497 KTQHQQYNHHHQ---------LQQQHQQEQHHHLTLSHHHQEQHHHLGHHHMGHHHHHHH 547

Query: 337 HH 332
            H
Sbjct: 548 QH 549

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>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9|
          Length = 221

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIKQK 594
           RIY+ NLP DV  ++L++LF   G++  I+ K
Sbjct: 15  RIYVGNLPTDVREKDLEDLFYKYGRIREIELK 46

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>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing|
           factor SRp30C)
          Length = 221

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIKQK 594
           RIY+ NLP DV  ++L++LF   G++  I+ K
Sbjct: 15  RIYVGNLPTDVREKDLEDLFYKYGRIREIELK 46

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>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRG 600
           R+++ NLP D+T +E + LF   G+ G +   +G
Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFINKG 323

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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRG 600
           R+++ NLP D+T +E + LF   G+ G +   +G
Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFINKG 331

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>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1|
          Length = 245

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRG 600
           RIY+ NLPPD+  ++++++F   G +  I  K +RG
Sbjct: 16  RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRG 51

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>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1|
          Length = 245

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRG 600
           RIY+ NLPPD+  ++++++F   G +  I  K +RG
Sbjct: 16  RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRG 51

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>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9|
          Length = 222

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIKQK 594
           RIY+ NLP DV  ++L++LF   G++  I+ K
Sbjct: 16  RIYVGNLPSDVREKDLEDLFYKYGRIREIELK 47

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>YLH3_SCHPO (Q9HGQ3) Hypothetical transport protein C17D4.03c in chromosome I|
          Length = 732

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = -2

Query: 400 DKVVEHHLRLHPQAQTEHHNHHHM*VAGLLAPLGHRHYMGSEVGHHSLVGKSLDRCHSC 224
           D  V  H   H  +Q  HH H+H           H H    +  H S+  ++LD  H C
Sbjct: 524 DDHVSQHEHTHENSQEHHHEHNH--------NHDHIHKYNEKCDHESISLQNLDNDHHC 574

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>UAP2_SCHPO (O43120) Splicing factor U2AF-associated protein 2|
          Length = 367

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSG 651
           +YI  LP DVTV+E++E+F   G + +        D     IKIY  + G
Sbjct: 112 VYIQGLPLDVTVDEIEEVFKKCGVIAK------NIDNGTPRIKIYRTEDG 155

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>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)|
          Length = 700

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI 585
           R+Y+ NL  D+T +EL+E+F   G++  I
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEI 331

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>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +I++  L PD   E+++E FGG G+V  I+
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIE 210

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>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)|
          Length = 225

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +I++  L PD   E+++E FGG G+V  I+
Sbjct: 173 KIFVGGLSPDTPEEKIREYFGGFGEVESIE 202

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>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP|
           core protein C) (Fragment)
          Length = 158

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +I++  L PD   E+++E FGG G+V  I+
Sbjct: 35  KIFVGGLSPDTPEEKIREYFGGFGEVESIE 64

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>CORTO_DROME (P41046) Centrosomal and chromosomal factor (CCF)|
           (Chromocentrosomin)
          Length = 550

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
 Frame = -2

Query: 439 QGQHLQNNRRHHLDKVVEHHLR----------LHPQAQTEHHNHHH 332
           Q QH Q  ++HH  +  +H             L  Q Q +HH HHH
Sbjct: 33  QQQHSQTQQQHHHQQQQQHMYHAAVAAHQQQLLQQQQQQQHHRHHH 78

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>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRI 585
           I++ N+ PDVT E++++ F   GQ+ RI
Sbjct: 66  IFVGNITPDVTPEQIEDHFKDCGQIKRI 93

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>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6|
           (RNA-binding protein srp-1) (CeSRp20)
          Length = 179

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRI 585
           ++Y+  LP D T +EL+E+F   G++ ++
Sbjct: 4   KVYVGGLPSDATSQELEEIFDRFGRIRKV 32

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>PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2)|
          Length = 623

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = -2

Query: 490 RRNHHSLHHTA*P---L**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VA 320
           + +HH  HH + P   L    G H  +  +  L +  +  L  HPQ Q + H+H      
Sbjct: 74  QHHHHHHHHHSHPHHQLAQQTGLHSHHTMQQQLQQQQQSLLLQHPQQQQQQHSHQSQ--- 130

Query: 319 GLLAPLGHRHYMGSEVGHHSLVGKS 245
                  H +   +++ HH L G S
Sbjct: 131 ---QQQQHGYGSSAQLPHHRLSGGS 152

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>PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)|
          Length = 125

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +YI NLP  +T EE+ ++FG  G + +I+
Sbjct: 21  LYIRNLPYKITAEEMYDIFGKYGPIRQIR 49

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>PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)|
          Length = 125

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +YI NLP  +T EE+ ++FG  G + +I+
Sbjct: 21  LYIRNLPYKITAEEMYDIFGKYGPIRQIR 49

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>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +I++  L PD   E+++E FGG G+V  I+
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIE 212

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>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +I++  L PD   E+++E FGG G+V  I+
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIE 212

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>HRP3_PLAFS (P14586) Histidine-rich protein|
          Length = 82

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -2

Query: 418 NRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAGLLAPLGHRHYMGSEVGHHS 260
           N R+H      HHL  H   +  HH HHH           HRH+   ++ H +
Sbjct: 3   NHRYHHYFHRHHHLNHHLYHRHHHHRHHH-----------HRHHHRHQILHQN 44

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>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2|
          Length = 365

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGY 603
           R+++  +PP  T E++ + F G GQ+   K   G+
Sbjct: 5   RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGF 39

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>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3|
           subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding
           subunit) (eIF3g)
          Length = 256

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = +1

Query: 508 ISNLPPDVTVEELQELFGGIGQVGRI 585
           ++NLP ++  +EL++LFG IG+V RI
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRI 205

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>FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
          Length = 481

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 418 NRRHHLDKVVEHHLRLHPQAQTEHHNHHH 332
           N  HH      HH   HPQ    HH+HHH
Sbjct: 30  NDNHHASH--GHHNSHHPQHHHHHHHHHH 56

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>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)|
           (Transcription factor BF-2) (Brain factor 2) (BF2)
           (HFK2)
          Length = 469

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 418 NRRHHLDKVVEHHLRLHPQAQTEHHNHHH 332
           N  HH      HH   HPQ    HH+HHH
Sbjct: 30  NDNHHASH--GHHNSHHPQHHHHHHHHHH 56

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>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
           (HFK1)
          Length = 477

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 418 NRRHHLDKVVEHHLRLHPQAQTEHHNHHH 332
           N  HH      HH   HPQ    HH+HHH
Sbjct: 30  NDNHHASH--GHHNSHHPQHHHHHHHHHH 56

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>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRG 600
           I + NLP      ELQE FG  G +GR+    G
Sbjct: 589 ILVKNLPAGTLAAELQETFGRFGSLGRVLLPEG 621

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>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
          Length = 480

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 418 NRRHHLDKVVEHHLRLHPQAQTEHHNHHH 332
           N  HH      HH   HPQ    HH+HHH
Sbjct: 30  NDNHHASH--GHHNSHHPQHHHHHHHHHH 56

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>ISPG_THETH (Q84GJ3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 406

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +2

Query: 68  EAKRTTKVTVAMDRLPLKALHPMAVLQVITHRPQVPMEATMCTVQSLQCH 217
           E  R    TV + R+P+   HP+AV Q +T+ P   +EAT  T Q L+ H
Sbjct: 2   EGMRRPTPTVYVGRVPIGGAHPIAV-QSMTNTPTRDVEAT--TAQVLELH 48

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>ISPG_THET8 (Q5SLI8) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 406

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +2

Query: 68  EAKRTTKVTVAMDRLPLKALHPMAVLQVITHRPQVPMEATMCTVQSLQCH 217
           E  R    TV + R+P+   HP+AV Q +T+ P   +EAT  T Q L+ H
Sbjct: 2   EGMRRPTPTVYVGRVPIGGAHPIAV-QSMTNTPTRDVEAT--TAQVLELH 48

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>ISPG_THET2 (Q72H18) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 406

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +2

Query: 68  EAKRTTKVTVAMDRLPLKALHPMAVLQVITHRPQVPMEATMCTVQSLQCH 217
           E  R    TV + R+P+   HP+AV Q +T+ P   +EAT  T Q L+ H
Sbjct: 2   EGMRRPTPTVYVGRVPIGGAHPIAV-QSMTNTPTRDVEAT--TAQVLELH 48

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>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQ 612
           +Y++NLP  +T +EL+++F   G+ G I QK   +D+
Sbjct: 173 LYVTNLPRTITDDELEKIF---GKYGNIVQKNILRDK 206

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>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQ 612
           +Y++NLP  +T +EL+++F   G+ G I QK   +D+
Sbjct: 190 LYVTNLPRTITDDELEKIF---GKYGNIVQKNILRDK 223

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>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein|
          Length = 124

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +Y+ NLP ++T EE+ ++FG  G + +I+
Sbjct: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIR 49

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>LRCH1_HUMAN (Q9Y2L9) Leucine-rich repeats and calponin homology|
           domain-containing protein 1 (Calponin homology
           domain-containing protein 1) (Neuronal protein 81)
           (NP81)
          Length = 728

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 373 LHPQAQTEHHNHHHM*VAGLLAPLGHRHYMGSEVGHHSLVGKSLDR 236
           LHP     HH+HHH    G  AP G     G   G +  + + L+R
Sbjct: 20  LHPLHHPHHHHHHHQHHGGTGAPGGAGGGGGGSGGFNLPLNRGLER 65

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>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2|
           (G-strand-binding protein 2) (RAP1 localization factor
           6)
          Length = 427

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQV 576
           I++ NL  D T E+L+ELFG +G+V
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEV 148

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>AHM1_ARATH (Q9M3H5) Putative cadmium/zinc-transporting ATPase HMA1,|
           chloroplast precursor (EC 3.6.3.3) (EC 3.6.3.5)
          Length = 819

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 415 RRHHLDKVVEHHLRLHPQAQTEHHNHHH 332
           R   L  V +HH   H   + +HHNHHH
Sbjct: 57  RSIRLRAVEDHHHDHHHDDEQDHHNHHH 84

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>ZN281_HUMAN (Q9Y2X9) Zinc finger protein 281 (Zinc finger DNA-binding protein|
           99) (Transcription factor ZBP-99) (GC-box-binding zinc
           finger protein 1)
          Length = 895

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 367 PQAQTEHHNHHHM*VAGLLAPLGHRH--YMGSEVGHHSLV 254
           P+ Q  HH+HHH    GL A    R     G E G H ++
Sbjct: 135 PEEQQSHHHHHHHHYGGLFAGAEERSPGLGGGEGGSHGVI 174

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>STAR_DROME (P42519) Protein Star|
          Length = 597

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = -2

Query: 427 LQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHHM*VAGLLAPLGHRHYMGSEVGHHSLVGK 248
           +++  R    ++   H + H Q    HH+HHH+  AG     G     G   G  S   K
Sbjct: 210 MESRARTSPQQIQHPHRQHHQQQHHHHHHHHHLTAAGCTGGGGGG---GGSGGSGSCKAK 266

Query: 247 SLD 239
            LD
Sbjct: 267 KLD 269

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>HSH49_YEAST (Q99181) Protein HSH49|
          Length = 213

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +Y+ N+ P +T E+L ELF  I  V RIK
Sbjct: 11  VYVGNIDPRITKEQLYELFIQINPVLRIK 39

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>WHI3_YEAST (P34761) Protein WHI3|
          Length = 661

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGG 564
           +Y+ NLP D T +EL++LF G
Sbjct: 540 LYVGNLPSDATEQELRQLFSG 560

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>HPN_HELPY (P0A0V6) Histidine-rich metal-binding polypeptide|
          Length = 59

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/61 (29%), Positives = 21/61 (34%)
 Frame = -2

Query: 370 HPQAQTEHHNHHHM*VAGLLAPLGHRHYMGSEVGHHSLVGKSLDRCHSC*GVALQTLNCT 191
           H +    HH+HHH           H HY G E  HH       + C S      Q   C 
Sbjct: 3   HEEQHGGHHHHHHH--------THHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEGCC 54

Query: 190 H 188
           H
Sbjct: 55  H 55

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>HPN_HELPJ (P0A0V7) Histidine-rich, metal binding polypeptide|
          Length = 59

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/61 (29%), Positives = 21/61 (34%)
 Frame = -2

Query: 370 HPQAQTEHHNHHHM*VAGLLAPLGHRHYMGSEVGHHSLVGKSLDRCHSC*GVALQTLNCT 191
           H +    HH+HHH           H HY G E  HH       + C S      Q   C 
Sbjct: 3   HEEQHGGHHHHHHH--------THHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEGCC 54

Query: 190 H 188
           H
Sbjct: 55  H 55

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>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIKQKR 597
           + ++ LP ++T EEL+ LFG IG++   K  R
Sbjct: 41  LIVNYLPQNMTQEELKSLFGSIGEIESCKLVR 72

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>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIKQKR 597
           + ++ LP ++T EEL+ LFG IG++   K  R
Sbjct: 41  LIVNYLPQNMTQEELKSLFGSIGEIESCKLVR 72

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>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQV 576
           +Y+ NLP ++T +EL++ FG  G +
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDI 251

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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRG 600
           ++Y+ NLP DV  +E++++F   G++  +  K G
Sbjct: 10  KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSG 43

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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 499 RIYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +I I NLP + T ++L ELFG  GQ+  ++
Sbjct: 718 KIIIKNLPFEATRKDLLELFGAFGQLKSVR 747

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>KAS2_STRHA (Q05357) Putative polyketide beta-ketoacyl synthase 2 (EC 2.3.1.-)|
           (KS) (Polyketide condensing enzyme)
          Length = 414

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 303 WGTATIWVRRWGTIAWWVRASTAAIAVRG 217
           WG  + +V  + +IAW+  AST  I++RG
Sbjct: 125 WGQGSKYVGPYQSIAWFYAASTGQISIRG 153

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>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)|
          Length = 428

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 436 GQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHHH 332
           G HL  +  HH      HH   H      HH+HHH
Sbjct: 133 GGHLHPHHPHHA-----HHHHHHHHHAAHHHHHHH 162

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>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQ 612
           +YI NL  ++T +E  +LFG  G++  +   +   D+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK 299

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>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIKQKR 597
           + ++ LP ++T EEL+ LFG IG++   K  R
Sbjct: 41  LIVNYLPQNMTQEELKSLFGSIGEIESCKLVR 72

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>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 433 QHLQNNRRHHLDKVVEHHLRL-HPQAQTEHHNH 338
           QH Q  + H   +  +HHL L H QAQ +H  H
Sbjct: 28  QHAQQQQHHLHMQQAQHHLHLSHQQAQQQHMQH 60

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>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1|
          Length = 396

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -2

Query: 541 PQQSHQGAGLRCKSLHCRRNHHSLHHTA*PL**VQGQHLQNNR--RHHLDKVVEHHLRLH 368
           P++ ++ +G R KS   +RN  S HH+   +   +  H +  R  R H +   + H R  
Sbjct: 78  PKKKNKASGRRSKSPRSKRN-RSPHHSTVKVKQEREDHPRRGREDRQHREPSEQEHRRAR 136

Query: 367 PQAQTEHHNHHH 332
              +  H  H H
Sbjct: 137 NSDRDRHRGHSH 148

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>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural|
           polypyrimidine tract-binding protein) (PTB-like protein)
          Length = 531

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKD 609
           +++SN+PP V  E+L+ LF   G  G +K  + ++D
Sbjct: 457 LHLSNIPPSVAEEDLRTLFANTG--GTVKAFKFFQD 490

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>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched|
           polypyrimidine tract-binding protein) (Brain-enriched
           PTB) (RRM-type RNA-binding protein brPTB) (Neural
           polypyrimidine tract-binding protein)
          Length = 531

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKD 609
           +++SN+PP V  E+L+ LF   G  G +K  + ++D
Sbjct: 457 LHLSNIPPSVAEEDLRTLFANTG--GTVKAFKFFQD 490

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>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched|
           homolog of PTB) (Neural polypyrimidine tract-binding
           protein) (PTB-like protein)
          Length = 531

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKD 609
           +++SN+PP V  E+L+ LF   G  G +K  + ++D
Sbjct: 457 LHLSNIPPSVAEEDLRTLFANTG--GTVKAFKFFQD 490

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>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von|
           Willebrand antigen II]
          Length = 2813

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -3

Query: 441 FRGSICRITAATTLIRWWSTTCASTPRHRPST 346
           FR  IC +  A T   W  T C   PR RPST
Sbjct: 4   FRYEICLLVLALT---WPGTLCTEKPRDRPST 32

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>ZEN_DROSU (Q24648) Protein zerknuellt|
          Length = 373

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 469 HHTA*PL**VQGQHLQNNRRHHLDKVVEHHLRLHPQAQTEHHNHH 335
           HH+A     +Q   LQN  +H +  + EH     P  Q  HH HH
Sbjct: 29  HHSAN----LQPTSLQNYTQHSVSSIPEH-----PSLQQHHHQHH 64

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>NRP1_YEAST (P32770) Asparagine-rich protein (Protein ARP)|
          Length = 719

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFG--GIGQVG------RIKQKRGYKDQWPWNIKIYTDD 645
           +Y++NLPPD T  EL+  F   G+  VG       ++      + W  N   Y +D
Sbjct: 228 LYMNNLPPDTTQSELESWFTQYGVRPVGFWTVKNIVEDTSNVNNNWSLNNSPYVED 283

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>CLCB_ECO57 (Q8X794) Voltage-gated ClC-type chloride channel clcB|
          Length = 418

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -3

Query: 618 GPLVFVATFLLDPSNLANSSKKLLQFLNSHIRGQV*DVNPCIVAGIIT-----VCITLLN 454
           GP++  A   L  SNL N S  LL  +   +  Q  D    I  G++      + +TL+N
Sbjct: 184 GPVIISAVVALLVSNLINHSDALLYSVQLSVTVQARDYALIISTGVLAGLCGPLLLTLMN 243

Query: 453 LCSR 442
            C R
Sbjct: 244 ACHR 247

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>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein|
          Length = 121

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 502 IYISNLPPDVTVEELQELFGGIGQVGRIK 588
           +Y+ NLP  +T +E+ ++FG  G + +I+
Sbjct: 17  LYVRNLPYKITSDEMYDIFGKFGAIRQIR 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,158,868
Number of Sequences: 219361
Number of extensions: 1647144
Number of successful extensions: 4715
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 3819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4327
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result