Clone Information

BLAST Search Result

Clone Name	baal12n09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_465260.1\| Oryza sativa (japonica cultivar-group), mRNA	353	3e-94
2	gb\|AY104587.1\| Zea mays PCO104634 mRNA sequence	264	2e-67
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	190	3e-45
4	dbj\|AP004024.3\| Oryza sativa (japonica cultivar-group) genomic D...	190	3e-45
5	dbj\|AP004798.2\| Oryza sativa (japonica cultivar-group) genomic D...	190	3e-45
6	ref\|NM_124867.2\| Arabidopsis thaliana unknown protein AT5G54855 ...	117	3e-23
7	gb\|AY093718.1\| Arabidopsis thaliana AT1g27100/T7N9_16 mRNA, comp...	117	3e-23
8	gb\|AF410270.1\|AF410270 Arabidopsis thaliana unknown protein mRNA...	117	3e-23
9	dbj\|AK118946.1\| Arabidopsis thaliana At5g54855 mRNA for unknown ...	117	3e-23
10	dbj\|AB005232.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	113	5e-22
11	gb\|AY088675.1\| Arabidopsis thaliana clone 9159 mRNA, complete se...	109	8e-21
12	emb\|BX830033.1\|CNS0A053 Arabidopsis thaliana Full-length cDNA Co...	84	4e-13
13	gb\|AY364845.1\| Virus PhiCh1 pBgB51 capsid protein, int1, and cap...	42	1.5
14	gb\|AY364843.1\| Virus PhiCh1 pBgB5 ORF34-5, integrase, and ORF36-...	42	1.5
15	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	42	1.5
16	gb\|AC099506.3\| Homo sapiens chromosome 16 clone RP11-22H5, compl...	42	1.5
17	gb\|AF440695.1\| Virus PhiCh1, complete genome	42	1.5
18	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
19	gb\|AC134230.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.5
20	gb\|AY661566.1\| Saccharopolyspora erythraea polyketide synthase g...	40	6.0
21	gb\|AC114420.11\| Mus musculus chromosome 5, clone RP23-375E13, co...	40	6.0
22	gb\|DQ149987.1\| Streptomyces neyagawaensis concanamycin A biosynt...	40	6.0
23	emb\|CR674137.2\|CNS0FJ4V Tetraodon nigroviridis full-length cDNA	40	6.0
24	emb\|Z82188.2\|HS151B14 Human DNA sequence from clone RP1-151B14 o...	40	6.0
25	emb\|AL161729.27\| Human DNA sequence from clone RP11-435O5 on chr...	40	6.0
26	gb\|BC023640.1\| Homo sapiens, clone IMAGE:4890344, mRNA	40	6.0
27	emb\|AL939109.1\|SCO939109 Streptomyces coelicolor A3(2) complete ...	40	6.0
28	emb\|AL939108.1\|SCO939108 Streptomyces coelicolor A3(2) complete ...	40	6.0
29	gb\|AE012496.1\| Xanthomonas campestris pv. campestris str. ATCC 3...	40	6.0
30	gb\|AC116665.1\| Papio hamadryas chromosome , clone RP41-119J13, c...	40	6.0
31	gb\|AF196488.2\|AF196488 Mycobacterium smegmatis hypothetical prot...	40	6.0
32	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	6.0
33	gb\|AC135209.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.0
34	gb\|CP000050.1\| Xanthomonas campestris pv. campestris str. 8004, ...	40	6.0
35	gb\|AC120182.8\| Mus musculus chromosome 1, clone RP24-501C2, comp...	40	6.0
36	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	6.0
37	gb\|AF031418.3\| Pseudomonas putida FliK (fliK), FliL, FliM (fliM)...	40	6.0
38	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	6.0
39	gb\|AC008572.6\|AC008572 Homo sapiens chromosome 5 clone CTC-551A1...	40	6.0
40	gb\|AC093475.9\| Mus musculus chromosome 1, clone RP23-54K22, comp...	40	6.0
41	gb\|M63676.1\|SERERYAA Saccharopolyspora erythraea EryA (eryA) gen...	40	6.0
42	gb\|CP000103.1\| Nitrosospira multiformis ATCC 25196, complete genome	40	6.0

>ref|XM_465260.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 468

 Score =  353 bits (178), Expect = 3e-94
 Identities = 283/318 (88%)
 Strand = Plus / Plus

                                                                       
Query: 130 ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 189
           ||||| || |||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 64  ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 123

                                                                       
Query: 190 cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 249
           | |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 124 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 183

                                                                       
Query: 250 ggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcg 309
           || || |||||||| || || |||||||||| ||||||||| || |||||||||||||| 
Sbjct: 184 ggtgccgaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggcc 243

                                                                       
Query: 310 ttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgg 369
           |||||||||| ||||||||||||||  ||||| ||||| ||||| ||||| ||||| |||
Sbjct: 244 ttcacaaactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgg 303

                                                                       
Query: 370 gattcgtgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgat 429
           || || ||| |||| ||||||||||||||||| |||||||||||||| | |||||| |||
Sbjct: 304 gagtcatgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgat 363

                             
Query: 430 gcacactctggggtcaag 447
            |||||||||||||||||
Sbjct: 364 acacactctggggtcaag 381

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>gb|AY104587.1| Zea mays PCO104634 mRNA sequence
          Length = 903

 Score =  264 bits (133), Expect = 2e-67
 Identities = 250/289 (86%)
 Strand = Plus / Plus

                                                                       
Query: 155 cggcggccgaggcttggacgggggagatccgcggccgcgtcgtctgcgacgtctgcgcgg 214
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 243 cggcggccgaggcttggacgggggagatccgcggccgcgtcgtctgcgacgtctgcggcg 302

                                                                       
Query: 215 actctgccatcggccccgaggaccacgtcctcgaaggcgctgaggttgctgttctgtgca 274
           || | ||||||||||| |||||||||| ||||||||| || ||||||||||| || ||||
Sbjct: 303 acgcagccatcggcccggaggaccacgccctcgaaggtgcggaggttgctgtcctctgca 362

                                                                       
Query: 275 tcacgaaatctggtgaggtcatcaactaccaggcgttcacaaactacaagggtgtctaca 334
           |||| |||||||||||||| |||||||| || || |||||||||| |||||| || || |
Sbjct: 363 tcacaaaatctggtgaggttatcaactatcaagccttcacaaactccaagggcgtgtata 422

                                                                       
Query: 335 gcgttgcagagacaatgcctgagagcgaccgatgggattcgtgcctggcgaggcccatca 394
             || || ||||| ||||| ||||||||| | ||||| |||||| |||||||||| || |
Sbjct: 423 ctgtcgccgagactatgccggagagcgacaggtgggactcgtgcttggcgaggcctatga 482

                                                            
Query: 395 gcagcttccaccagcattgcaccaggaggggcgatgcacactctggggt 443
           |||||||||| |  ||||||||  || |||| ||||| |||||||||||
Sbjct: 483 gcagcttccatctacattgcacacggcggggtgatgctcactctggggt 531

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  190 bits (96), Expect = 3e-45
 Identities = 168/192 (87%)
 Strand = Plus / Minus

                                                                            
Query: 256      gaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttcaca 315
                |||||||| || || |||||||||| ||||||||| || |||||||||||||| ||||||
Sbjct: 12629680 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 12629621

                                                                            
Query: 316      aactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggattcg 375
                |||| ||||||||||||||  ||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 12629620 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 12629561

                                                                            
Query: 376      tgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgatgcacac 435
                ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| |||||
Sbjct: 12629560 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 12629501

                            
Query: 436      tctggggtcaag 447
                ||||||||||||
Sbjct: 12629500 tctggggtcaag 12629489



 Score =  170 bits (86), Expect = 2e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                            
Query: 130      ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 189
                ||||| || |||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12632467 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 12632408

                                                                            
Query: 190      cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 249
                | |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 12632407 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 12632348

                  
Query: 250      gg 251
                ||
Sbjct: 12632347 gg 12632346

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>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_B09
          Length = 105247

 Score =  190 bits (96), Expect = 3e-45
 Identities = 168/192 (87%)
 Strand = Plus / Minus

                                                                         
Query: 256   gaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttcaca 315
             |||||||| || || |||||||||| ||||||||| || |||||||||||||| ||||||
Sbjct: 26739 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 26680

                                                                         
Query: 316   aactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggattcg 375
             |||| ||||||||||||||  ||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 26679 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 26620

                                                                         
Query: 376   tgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgatgcacac 435
             ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| |||||
Sbjct: 26619 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 26560

                         
Query: 436   tctggggtcaag 447
             ||||||||||||
Sbjct: 26559 tctggggtcaag 26548



 Score =  170 bits (86), Expect = 2e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                         
Query: 130   ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 189
             ||||| || |||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 29526 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 29467

                                                                         
Query: 190   cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 249
             | |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 29466 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 29407

               
Query: 250   gg 251
             ||
Sbjct: 29406 gg 29405

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>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0572D06
          Length = 148920

 Score =  190 bits (96), Expect = 3e-45
 Identities = 168/192 (87%)
 Strand = Plus / Minus

                                                                          
Query: 256    gaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttcaca 315
              |||||||| || || |||||||||| ||||||||| || |||||||||||||| ||||||
Sbjct: 134213 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 134154

                                                                          
Query: 316    aactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggattcg 375
              |||| ||||||||||||||  ||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 134153 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 134094

                                                                          
Query: 376    tgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgatgcacac 435
              ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| |||||
Sbjct: 134093 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 134034

                          
Query: 436    tctggggtcaag 447
              ||||||||||||
Sbjct: 134033 tctggggtcaag 134022



 Score =  170 bits (86), Expect = 2e-39
 Identities = 113/122 (92%)
 Strand = Plus / Minus

                                                                          
Query: 130    ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 189
              ||||| || |||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 137000 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 136941

                                                                          
Query: 190    cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 249
              | |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 136940 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 136881

                
Query: 250    gg 251
              ||
Sbjct: 136880 gg 136879

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>ref|NM_124867.2| Arabidopsis thaliana unknown protein AT5G54855 mRNA, complete cds
          Length = 679

 Score =  117 bits (59), Expect = 3e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                       
Query: 247 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 306
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 259 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 318

                                                                       
Query: 307 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 366
           || ||||||||||  || ||||||||||  ||||||||||||||||| |||||||| || 
Sbjct: 319 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 378

                                                  
Query: 367 tgggattcgtgcctggcgaggcccatcagcagcttccac 405
           |||||  | ||||| || || ||||||||||||||||||
Sbjct: 379 tgggacgcttgccttgcaagacccatcagcagcttccac 417

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>gb|AY093718.1| Arabidopsis thaliana AT1g27100/T7N9_16 mRNA, complete cds
          Length = 441

 Score =  117 bits (59), Expect = 3e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                       
Query: 247 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 306
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 157 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 216

                                                                       
Query: 307 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 366
           || ||||||||||  || ||||||||||  ||||||||||||||||| |||||||| || 
Sbjct: 217 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 276

                                                  
Query: 367 tgggattcgtgcctggcgaggcccatcagcagcttccac 405
           |||||  | ||||| || || ||||||||||||||||||
Sbjct: 277 tgggacgcttgccttgcaagacccatcagcagcttccac 315

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>gb|AF410270.1|AF410270 Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 636

 Score =  117 bits (59), Expect = 3e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                       
Query: 247 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 306
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 216 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 275

                                                                       
Query: 307 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 366
           || ||||||||||  || ||||||||||  ||||||||||||||||| |||||||| || 
Sbjct: 276 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 335

                                                  
Query: 367 tgggattcgtgcctggcgaggcccatcagcagcttccac 405
           |||||  | ||||| || || ||||||||||||||||||
Sbjct: 336 tgggacgcttgccttgcaagacccatcagcagcttccac 374

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>dbj|AK118946.1| Arabidopsis thaliana At5g54855 mRNA for unknown protein, complete
           cds, clone: RAFL21-28-L11
          Length = 635

 Score =  117 bits (59), Expect = 3e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                       
Query: 247 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 306
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 229 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 288

                                                                       
Query: 307 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 366
           || ||||||||||  || ||||||||||  ||||||||||||||||| |||||||| || 
Sbjct: 289 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 348

                                                  
Query: 367 tgggattcgtgcctggcgaggcccatcagcagcttccac 405
           |||||  | ||||| || || ||||||||||||||||||
Sbjct: 349 tgggacgcttgccttgcaagacccatcagcagcttccac 387

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>dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8
          Length = 80315

 Score =  113 bits (57), Expect = 5e-22
 Identities = 129/153 (84%)
 Strand = Plus / Plus

                                                                         
Query: 253   gctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttc 312
             ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| || |||
Sbjct: 42976 gctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaagctttc 43035

                                                                         
Query: 313   acaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggat 372
             |||||||  || ||||||||||  ||||||||||||||||| |||||||| || ||||| 
Sbjct: 43036 acaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgttgggac 43095

                                              
Query: 373   tcgtgcctggcgaggcccatcagcagcttccac 405
              | ||||| || || ||||||||||||||||||
Sbjct: 43096 gcttgccttgcaagacccatcagcagcttccac 43128

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>gb|AY088675.1| Arabidopsis thaliana clone 9159 mRNA, complete sequence
          Length = 661

 Score =  109 bits (55), Expect = 8e-21
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                       
Query: 247 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 306
           ||||| ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| 
Sbjct: 259 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 318

                                                                       
Query: 307 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 366
           || ||||| ||||  || ||||||||||  ||||||||||||||||| |||||||| || 
Sbjct: 319 gctttcactaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 378

                                                  
Query: 367 tgggattcgtgcctggcgaggcccatcagcagcttccac 405
           |||||  | ||||| || || ||||||||||||||||||
Sbjct: 379 tgggacgcttgccttgcaagacccatcagcagcttccac 417

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>emb|BX830033.1|CNS0A053 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB54ZF04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1507

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 123/150 (82%)
 Strand = Plus / Plus

                                                                        
Query: 253  gctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttc 312
            ||||||||||| ||||||||||| || |||||||| || ||  | |||||||| || || 
Sbjct: 1134 gctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaagctttt 1193

                                                                        
Query: 313  acaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggat 372
            |||||||  || |||||||| |  ||||||||||||||||| |||||||| || ||||| 
Sbjct: 1194 acaaactcaaaaggtgtctaaacagttgcagagacaatgccagagagcgaacgttgggac 1253

                                          
Query: 373  tcgtgcctggcgaggcccatcagcagcttc 402
             | | ||| || || |||||||||||||||
Sbjct: 1254 gcttcccttgcaagacccatcagcagcttc 1283

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>gb|AY364845.1| Virus PhiCh1 pBgB51 capsid protein, int1, and capsid protein genes,
            complete cds
          Length = 5995

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 184  cgcggccgcgtcgtctgcgac 204
            |||||||||||||||||||||
Sbjct: 5722 cgcggccgcgtcgtctgcgac 5742

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>gb|AY364843.1| Virus PhiCh1 pBgB5 ORF34-5, integrase, and ORF36-5 genes, complete
            cds
          Length = 5995

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 184  cgcggccgcgtcgtctgcgac 204
            |||||||||||||||||||||
Sbjct: 5722 cgcggccgcgtcgtctgcgac 5742

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 188      gccgcgtcgtctgcgacgtctgcgc 212
                ||||||||||||||| |||||||||
Sbjct: 11359213 gccgcgtcgtctgcgccgtctgcgc 11359237



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 188     gccgcgtcgtctgcgacgtctgcg 211
               ||||||||||||||| ||||||||
Sbjct: 8951927 gccgcgtcgtctgcgccgtctgcg 8951904

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>gb|AC099506.3| Homo sapiens chromosome 16 clone RP11-22H5, complete sequence
          Length = 186318

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    aaaagtcaccaagctctaccc 34
             |||||||||||||||||||||
Sbjct: 38035 aaaagtcaccaagctctaccc 38055

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>gb|AF440695.1| Virus PhiCh1, complete genome
          Length = 58498

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   cgcggccgcgtcgtctgcgac 204
             |||||||||||||||||||||
Sbjct: 27029 cgcggccgcgtcgtctgcgac 27049

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 188      gccgcgtcgtctgcgacgtctgcgc 212
                ||||||||||||||| |||||||||
Sbjct: 11355976 gccgcgtcgtctgcgccgtctgcgc 11356000



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 188     gccgcgtcgtctgcgacgtctgcg 211
               ||||||||||||||| ||||||||
Sbjct: 8949762 gccgcgtcgtctgcgccgtctgcg 8949739

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>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005J15, complete sequence
          Length = 159270

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 188   gccgcgtcgtctgcgacgtctgcgc 212
             ||||||||||||||| |||||||||
Sbjct: 67510 gccgcgtcgtctgcgccgtctgcgc 67534

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>gb|AY661566.1| Saccharopolyspora erythraea polyketide synthase gene cluster,
            complete sequence
          Length = 32299

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 136  ttcctgctggccgcggccccggcg 159
            ||||||||||||||||||| ||||
Sbjct: 1231 ttcctgctggccgcggcccaggcg 1254

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>gb|AC114420.11| Mus musculus chromosome 5, clone RP23-375E13, complete sequence
          Length = 155958

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     ctcaccggtgtctgctcctc 114
              ||||||||||||||||||||
Sbjct: 130526 ctcaccggtgtctgctcctc 130545

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>gb|DQ149987.1| Streptomyces neyagawaensis concanamycin A biosynthetic gene cluster,
             complete sequence
          Length = 99892

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   ggccgcggccccggcggccg 163
             ||||||||||||||||||||
Sbjct: 60608 ggccgcggccccggcggccg 60627

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>emb|CR674137.2|CNS0FJ4V Tetraodon nigroviridis full-length cDNA
          Length = 453

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 138 cctgctggccgcggccccggcggc 161
           ||||||||||| ||||||||||||
Sbjct: 131 cctgctggccgaggccccggcggc 154

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>emb|Z82188.2|HS151B14 Human DNA sequence from clone RP1-151B14 on chromosome 22, complete
             sequence
          Length = 128942

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   ctcctccatctggccatcct 131
             ||||||||||||||||||||
Sbjct: 96064 ctcctccatctggccatcct 96045

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>emb|AL161729.27| Human DNA sequence from clone RP11-435O5 on chromosome 9q22.1-22.33
             Contains the PTCH gene for patched homolog, a novel gene,
             the gene for a novel protein similar to a metallothionein
             protein (MT1) and three CpG islands, complete sequence
          Length = 189643

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   gctggccgcggccccggcgg 160
             ||||||||||||||||||||
Sbjct: 53478 gctggccgcggccccggcgg 53459

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>gb|BC023640.1| Homo sapiens, clone IMAGE:4890344, mRNA
          Length = 1429

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  gctggccgcggccccggcgg 160
            ||||||||||||||||||||
Sbjct: 1140 gctggccgcggccccggcgg 1159

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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    gccgcggccccggcggccga 164
              ||||||||||||||||||||
Sbjct: 122901 gccgcggccccggcggccga 122882

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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 225    cggccccgaggaccacgtcctcga 248
              |||||||||||||| |||||||||
Sbjct: 335453 cggccccgaggacctcgtcctcga 335430

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>gb|AE012496.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 404
            of 460 of the complete genome
          Length = 12103

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 141  gctggccgcggccccggcgg 160
            ||||||||||||||||||||
Sbjct: 8722 gctggccgcggccccggcgg 8703

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>gb|AC116665.1| Papio hamadryas chromosome , clone RP41-119J13, complete sequence
          Length = 176602

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 144   ggccgcggccccggcggccgaggc 167
             |||||||||| |||||||||||||
Sbjct: 21182 ggccgcggccgcggcggccgaggc 21205

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>gb|AF196488.2|AF196488 Mycobacterium smegmatis hypothetical protein, complete cds; and
            cydABDC gene cluster, complete sequence
          Length = 7506

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 145  gccgcggccccggcggccgaggct 168
            ||||||||||||||||||| ||||
Sbjct: 6534 gccgcggccccggcggccgtggct 6557

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 240     cgtcctcgaaggcgctgagg 259
               ||||||||||||||||||||
Sbjct: 4215927 cgtcctcgaaggcgctgagg 4215908

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>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0071M09, complete sequence
          Length = 143595

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 188   gccgcgtcgtctgcgacgtctgcg 211
             ||||||||||||||| ||||||||
Sbjct: 76788 gccgcgtcgtctgcgccgtctgcg 76765

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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 141     gctggccgcggccccggcgg 160
               ||||||||||||||||||||
Sbjct: 4524156 gctggccgcggccccggcgg 4524137

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>gb|AC120182.8| Mus musculus chromosome 1, clone RP24-501C2, complete sequence
          Length = 188506

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   tcagcagcttccaccagcat 411
             ||||||||||||||||||||
Sbjct: 24887 tcagcagcttccaccagcat 24868

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 228     ccccgaggaccacgtcctcg 247
               ||||||||||||||||||||
Sbjct: 1743973 ccccgaggaccacgtcctcg 1743992

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>gb|AF031418.3| Pseudomonas putida FliK (fliK), FliL, FliM (fliM), FliN (fliN), FliO
            (fliO), FliP (fliP), FliQ (fliQ), FliR (fliR), and FlhB
            (flhB) genes, complete cds; and unknown gene
          Length = 10493

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 140  tgctggccgcggccccggcggccg 163
            |||||||||||||| |||||||||
Sbjct: 4094 tgctggccgcggcctcggcggccg 4071

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 181     atccgcggccgcgtcgtctgcgacgtct 208
               |||||||||||||||||| || ||||||
Sbjct: 2820186 atccgcggccgcgtcgtcggcaacgtct 2820213

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>gb|AC008572.6|AC008572 Homo sapiens chromosome 5 clone CTC-551A13, complete sequence
          Length = 170529

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   ctgaggttgctgttctgtgc 273
             ||||||||||||||||||||
Sbjct: 74384 ctgaggttgctgttctgtgc 74403

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>gb|AC093475.9| Mus musculus chromosome 1, clone RP23-54K22, complete sequence
          Length = 248543

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 392    tcagcagcttccaccagcat 411
              ||||||||||||||||||||
Sbjct: 216627 tcagcagcttccaccagcat 216608

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>gb|M63676.1|SERERYAA Saccharopolyspora erythraea EryA (eryA) gene, complete cds
          Length = 11219

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 136  ttcctgctggccgcggccccggcg 159
            ||||||||||||||||||| ||||
Sbjct: 1818 ttcctgctggccgcggcccaggcg 1841

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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 47      aaaggcaaagagcaaaccaa 66
               ||||||||||||||||||||
Sbjct: 1874434 aaaggcaaagagcaaaccaa 1874453


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,237,904
Number of Sequences: 3902068
Number of extensions: 3237904
Number of successful extensions: 66972
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66392
Number of HSP's gapped (non-prelim): 578
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result