ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal12n06 |
|---|---|
| Clone Library Name | barley_pub |
>YM11_YEAST (P39523) Hypothetical 105.9 kDa protein in RPL15B-GCR3 intergenic| region Length = 943 Score = 31.6 bits (70), Expect = 2.3 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 9/70 (12%) Frame = -3 Query: 667 SNHPLSFQ-TPTILPMARQ---Q*YLLP----PRFHDQIPRPTASLQSPSGKLQYGLHKL 512 +NHP FQ TP ++P +Q Q L PR+ Q PRP A Q S + Q +L Sbjct: 321 NNHPGQFQNTPPVMPSGQQPPQQPRTLSLTNGPRYSPQNPRPFAGHQQISQRQQQQQQQL 380 Query: 511 Q-*PTSQGFQ 485 Q P S+G++ Sbjct: 381 QLHPMSEGYR 390
>LEP4_NEIGO (P33566) Type 4 prepilin-like proteins leader peptide-processing| enzyme [Includes: Leader peptidase (EC 3.4.23.43) (Prepilin peptidase); N-methyltransferase (EC 2.1.1.-)] Length = 286 Score = 31.2 bits (69), Expect = 3.0 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +1 Query: 478 GGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENEEGEDIIAVLPW 627 GGF L+ V GA AG++++ L + KL G++G N + + I A+ W Sbjct: 172 GGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAW 221
>YUEC_BACSU (O32100) Hypothetical protein yueC| Length = 151 Score = 31.2 bits (69), Expect = 3.0 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +1 Query: 313 LFTNTGWGENANLAFLKKHMGATFEERPKPWVSELNPDDIQSGDFLVLSKI 465 LFT+T ++ +A K +G TF E+P S +D Q L+L I Sbjct: 74 LFTSTNAEDSNTIAAQSKQLGITFAEKPMTKTSSTETEDEQETSSLLLPMI 124
>VEXE_SALTI (P43112) Vi polysaccharide export protein vexE| Length = 656 Score = 31.2 bits (69), Expect = 3.0 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +1 Query: 142 PYRVTWDYYFLGREHTLEIKEWESKAEYEYVKHN 243 P R+ W + GR+ +E EWE +A++ Y+ N Sbjct: 408 PERLDWAWEVAGRQSGIERDEWERRAKWGYLADN 441
>NMDZ1_CANFA (Q5R1P0) Glutamate [NMDA] receptor subunit zeta 1 precursor| (N-methyl-D-aspartate receptor subunit NR1) (NMD-R1) (N-methyl-D-aspartate receptor 1) Length = 943 Score = 30.0 bits (66), Expect = 6.6 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 21/117 (17%) Frame = +1 Query: 121 DLYVFATPYRVTWDYYFLGREHT------LEIKEWESKAE-YEYVKHNGVSIFLMPSGTI 279 D +++AT + + D YF + +E +ES AE + V+ N + F+ S + Sbjct: 698 DKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVL 757 Query: 280 GTLRA----LWDVFPLFTNTG----------WGENANLAFLKKHMGATFEERPKPWV 408 + L LF +G W +N +L+ LK H E+ K WV Sbjct: 758 EFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWV 814
>INVG_SALTY (P35672) Protein invG precursor| Length = 562 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +1 Query: 361 KKHMGATFEERPKPWVSELNPDDIQSGDFLVLSKIRGRWGGFETLEKWV 507 K ++ F PK V L PD +S + ++ K G W G + L+KWV Sbjct: 504 KSNVVRVFMIEPKEIVDPLTPDASESVNNIL--KQSGAWSGDDKLQKWV 550
>NMDZ1_RAT (P35439) Glutamate [NMDA] receptor subunit zeta 1 precursor| (N-methyl-D-aspartate receptor subunit NR1) (NMD-R1) (N-methyl-D-aspartate receptor) Length = 938 Score = 30.0 bits (66), Expect = 6.6 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 21/117 (17%) Frame = +1 Query: 121 DLYVFATPYRVTWDYYFLGREHT------LEIKEWESKAE-YEYVKHNGVSIFLMPSGTI 279 D +++AT + + D YF + +E +ES AE + V+ N + F+ S + Sbjct: 677 DKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVL 736 Query: 280 GTLRA----LWDVFPLFTNTG----------WGENANLAFLKKHMGATFEERPKPWV 408 + L LF +G W +N +L+ LK H E+ K WV Sbjct: 737 EFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWV 793
>NMDZ1_MOUSE (P35438) Glutamate [NMDA] receptor subunit zeta 1 precursor| (N-methyl-D-aspartate receptor subunit NR1) Length = 938 Score = 30.0 bits (66), Expect = 6.6 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 21/117 (17%) Frame = +1 Query: 121 DLYVFATPYRVTWDYYFLGREHT------LEIKEWESKAE-YEYVKHNGVSIFLMPSGTI 279 D +++AT + + D YF + +E +ES AE + V+ N + F+ S + Sbjct: 677 DKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVL 736 Query: 280 GTLRA----LWDVFPLFTNTG----------WGENANLAFLKKHMGATFEERPKPWV 408 + L LF +G W +N +L+ LK H E+ K WV Sbjct: 737 EFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWV 793
>NMDZ1_HUMAN (Q05586) Glutamate [NMDA] receptor subunit zeta 1 precursor| (N-methyl-D-aspartate receptor subunit NR1) Length = 938 Score = 30.0 bits (66), Expect = 6.6 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 21/117 (17%) Frame = +1 Query: 121 DLYVFATPYRVTWDYYFLGREHT------LEIKEWESKAE-YEYVKHNGVSIFLMPSGTI 279 D +++AT + + D YF + +E +ES AE + V+ N + F+ S + Sbjct: 677 DKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVL 736 Query: 280 GTLRA----LWDVFPLFTNTG----------WGENANLAFLKKHMGATFEERPKPWV 408 + L LF +G W +N +L+ LK H E+ K WV Sbjct: 737 EFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWV 793
>DPO3_CLOPE (Q8XJR3) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1449 Score = 30.0 bits (66), Expect = 6.6 Identities = 14/50 (28%), Positives = 22/50 (44%) Frame = -1 Query: 372 HMLFEKCKVCILTPSSICEKRENIPECSECPDCS*RHEEDGHSIMFHIFI 223 H + CK ++P+ CPDC ++ +DGH I F F+ Sbjct: 920 HYVCPNCKKSEFFLDGSISSGADLPD-KNCPDCGAKYIKDGHDIPFETFL 968
>SEC63_MOUSE (Q8VHE0) Translocation protein SEC63 homolog| Length = 759 Score = 29.6 bits (65), Expect = 8.7 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Frame = +1 Query: 211 SKAEYEYVKHNGVSIF-LMPSGTIGTLRALWDVFPL--FTNTGWGENANLAFLKKHMGAT 381 SK + EY ++N + L P T+ ++ + + L + G E + K + T Sbjct: 93 SKTDREYQEYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEVMFMRIAKAYAALT 152 Query: 382 FEERPKPWVSELNPDDIQSGDF 447 EE K W NPD Q+ F Sbjct: 153 DEESRKNWEEFGNPDGPQATSF 174
>SEC63_HUMAN (Q9UGP8) Translocation protein SEC63 homolog| Length = 759 Score = 29.6 bits (65), Expect = 8.7 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Frame = +1 Query: 211 SKAEYEYVKHNGVSIF-LMPSGTIGTLRALWDVFPL--FTNTGWGENANLAFLKKHMGAT 381 SK + EY ++N + L P T+ ++ + + L + G E + K + T Sbjct: 93 SKTDREYQEYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEVMFMRIAKAYAALT 152 Query: 382 FEERPKPWVSELNPDDIQSGDF 447 EE K W NPD Q+ F Sbjct: 153 DEESRKNWEEFGNPDGPQATSF 174
>COBQ_DEIRA (Q9RZU9) Cobyric acid synthase| Length = 474 Score = 29.6 bits (65), Expect = 8.7 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -1 Query: 405 PRFWPFLKGRAHMLFEKCKVCIL 337 PR WPF+KG H L ++ V ++ Sbjct: 109 PRLWPFVKGALHSLLDEFDVVVI 131
>PSD3_CAEEL (Q04908) 26S proteasome non-ATPase regulatory subunit 3 (26S| proteasome regulatory subunit rpn-3) Length = 504 Score = 29.6 bits (65), Expect = 8.7 Identities = 17/56 (30%), Positives = 31/56 (55%) Frame = +2 Query: 281 GHSEHSGMFSLFSQILDGVRMQTLHFSKSIWARPLRNGQNRGFQN*ILMTSNLEIF 448 G ++ + +++ + LDG+ +TL+F I+ R R ++GF N L T+ L F Sbjct: 156 GENQLTSIYNFDRRTLDGLAAKTLYFLCVIYEREGRLFDHQGFLNSRLRTATLRNF 211
>VIT1_CHICK (P87498) Vitellogenin-1 precursor (Vitellogenin I) (Minor| vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I) (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II) (LVII); YGP42] Length = 1912 Score = 29.6 bits (65), Expect = 8.7 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Frame = -1 Query: 351 KVCILTPSSICEKRENIP-ECSEC 283 KVC+L+ +S+C KR + P CSEC Sbjct: 434 KVCLLSYASLCHKRCSSPYSCSEC 457 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,019,890 Number of Sequences: 219361 Number of extensions: 2474831 Number of successful extensions: 7044 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 6735 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7038 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
