ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal13b23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_186000.1| Oryza sativa (japonica cultivar-group), mRNA Length = 915 Score = 603 bits (304), Expect = e-169 Identities = 472/528 (89%) Strand = Plus / Plus Query: 4 cgcgcggtgggagcccatgggggcccgggagtactacgactaccggcgggccatctacgg 63 |||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 135 cgcgaggtgggagccgatgggggcgcgggagtactacgactaccggagggccatctacgg 194 Query: 64 cgaaatcacgcacaaggccatcctcgtcgacgccgccggcaccctcctcgcccccaccga 123 ||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 195 cgacatcacccacaaggccatcctcgtcgacgccgccgggacgctcctcgcccccaccga 254 Query: 124 gcccatggcccaggtgtacagaacaataggcgaaaagtatggggtgaagtactcggagga 183 ||||||||| ||||| ||||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 255 gcccatggcgcaggtatacagaacaattggcgaaaagtatggagtcaactactcagagga 314 Query: 184 tgagatcttgatgaggtaccggcaggcatattcgcagccatggggcaaatcgcggcttag 243 ||||||||||||||| ||| || ||| ||| ||||||||||||| | ||||||||| || Sbjct: 315 tgagatcttgatgagatacaggagggcttatgcgcagccatggggtagatcgcggctgag 374 Query: 244 gtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgctc 303 |||||| ||||| || |||||||| ||||| ||||||||||| ||||| || || ||||| Sbjct: 375 gtatgtggatgatggtaggcccttctggcagcatatagttagctcttcaactggatgctc 434 Query: 304 agatttacagtacttcgaggaactttatcattactatacaactgagaaggcctggcagct 363 ||||||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||| Sbjct: 435 agatttacagtactttgaggaactttatcagtactatacaactgcaaaggcttggcagct 494 Query: 364 cattgatcccgatgctaaatacgtttttgaagcattaagaagggctggtgtgagaacagc 423 | || || || |||||||| |||||||||||||| |||| ||||||||| | |||||| Sbjct: 495 ctgcgaccctgacgctaaatatgtttttgaagcattgagaaaggctggtgtaaaaacagc 554 Query: 424 tgttgtatccaactttgacacccgcctccggccacttttacaggcactgaattgtgatca 483 ||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| Sbjct: 555 tgttgtatccaactttgacacacgtcttcggccacttttacaggccctgaattgtgatca 614 Query: 484 ctggtttgatgcggttgctgtatctgctgaggttgcagcagaaaagcc 531 |||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 615 ctggtttgatgcagttgctgtatctgctgaggttgctgcggaaaagcc 662
>gb|DQ103591.1| Oryza sativa (japonica cultivar-group) DT-related protein (Dr1) mRNA, complete cds Length = 876 Score = 581 bits (293), Expect = e-163 Identities = 471/529 (89%), Gaps = 1/529 (0%) Strand = Plus / Plus Query: 4 cgcgcggtgggagccc-atgggggcccgggagtactacgactaccggcgggccatctacg 62 |||| ||||||||| | |||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 29 cgcgaggtgggagctcgatgggggcgcgggagtactacgactaccggagggccatctacg 88 Query: 63 gcgaaatcacgcacaaggccatcctcgtcgacgccgccggcaccctcctcgcccccaccg 122 |||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 89 gcgacatcacccacaaggccatcctcgtcgacgccgccgggacgctcctcgcccccaccg 148 Query: 123 agcccatggcccaggtgtacagaacaataggcgaaaagtatggggtgaagtactcggagg 182 |||||||||| ||||| ||||||||||| |||||||||||||| || || ||||| |||| Sbjct: 149 agcccatggcgcaggtatacagaacaattggcgaaaagtatggagtcaactactcagagg 208 Query: 183 atgagatcttgatgaggtaccggcaggcatattcgcagccatggggcaaatcgcggctta 242 |||||||||||||||| ||| || ||| ||| ||||||||||||| | |||||| || | Sbjct: 209 atgagatcttgatgagatacaggagggcttatgcgcagccatggggtagatcgcgtctga 268 Query: 243 ggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgct 302 ||||||| ||||| || |||||||| ||||| ||||||||||| ||||| || || |||| Sbjct: 269 ggtatgtggatgatggtaggcccttctggcagcatatagttagctcttcaactggatgct 328 Query: 303 cagatttacagtacttcgaggaactttatcattactatacaactgagaaggcctggcagc 362 |||||||||||||||| |||||||||||||| ||||||||||||| ||||| ||||||| Sbjct: 329 cagatttacagtactttgaggaactttatcagtactatacaactgcaaaggcttggcagc 388 Query: 363 tcattgatcccgatgctaaatacgtttttgaagcattaagaagggctggtgtgagaacag 422 || || || || |||||||| |||||||||||||| |||| ||||||||| | ||||| Sbjct: 389 tctgcgaccctgacgctaaatatgtttttgaagcattgagaaaggctggtgtaaaaacag 448 Query: 423 ctgttgtatccaactttgacacccgcctccggccacttttacaggcactgaattgtgatc 482 |||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||| Sbjct: 449 ctgttgtatccaactttgacactcgtcttcggccacttttacaggccctgaattgtgatc 508 Query: 483 actggtttgatgcggttgctgtatctgctgaggttgcagcagaaaagcc 531 ||||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 509 actggtttgatgcagttgctgtatctgctgaggttgctgcggaaaagcc 557
>gb|AY107813.1| Zea mays PCO123922 mRNA sequence Length = 730 Score = 276 bits (139), Expect = 7e-71 Identities = 238/271 (87%) Strand = Plus / Plus Query: 89 gtcgacgccgccggcaccctcctcgcccccaccgagcccatggcccaggtgtacagaaca 148 ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| || Sbjct: 8 gtcgacgccgccggcacgctgctcgcccccaccgagcccatggcgcaggtgtacaggacg 67 Query: 149 ataggcgaaaagtatggggtgaagtactcggaggatgagatcttgatgaggtaccggcag 208 |||||| | ||||| || ||||| ||||| ||||||||||| ||||| ||||||||| Sbjct: 68 ataggccagaagtacggagtgaattactcagaggatgagattctgatgcggtaccggcta 127 Query: 209 gcatattcgcagccatggggcaaatcgcggcttaggtatgtcgatgacgggaggcccttt 268 || ||| ||||||||||||| |||||| || ||||||||||||||||| ||||||||| Sbjct: 128 gcttatgcgcagccatggggtcgatcgcgtctgaggtatgtcgatgacggaaggcccttt 187 Query: 269 tggcaacatatagttagttcttctacaggctgctcagatttacagtacttcgaggaactt 328 |||||||||||||| || || ||||| |||||||||||| ||||||||||||||||||| Sbjct: 188 tggcaacatatagtgagctcatctaccggctgctcagatctacagtacttcgaggaactg 247 Query: 329 tatcattactatacaactgagaaggcctggc 359 || || ||||| ||||||||||||||||||| Sbjct: 248 taccagtactacacaactgagaaggcctggc 278 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Plus Query: 431 tccaactttgacacccgcctccggccacttttacaggcactgaattgtgatcactggttt 490 |||||||| ||||| || || ||||| ||||||||||| ||||| || || |||||| Sbjct: 350 tccaacttcgacactcgtcttcggccgcttttacaggcgctgaaatgcgacggctggttc 409 Query: 491 gatgcggttgctgtatctgctgaggttgcagcagaaaagcc 531 || || |||||||| |||||||||||||||||||||||||| Sbjct: 410 gacgcagttgctgtgtctgctgaggttgcagcagaaaagcc 450
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 198 bits (100), Expect = 1e-47 Identities = 130/140 (92%) Strand = Plus / Minus Query: 377 gctaaatacgtttttgaagcattaagaagggctggtgtgagaacagctgttgtatccaac 436 |||||||| |||||||||||||| |||| ||||||||| | ||||||||||||||||||| Sbjct: 27730883 gctaaatatgtttttgaagcattgagaaaggctggtgtaaaaacagctgttgtatccaac 27730824 Query: 437 tttgacacccgcctccggccacttttacaggcactgaattgtgatcactggtttgatgcg 496 |||||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 27730823 tttgacacacgtcttcggccacttttacaggccctgaattgtgatcactggtttgatgca 27730764 Query: 497 gttgctgtatctgctgaggt 516 |||||||||||||||||||| Sbjct: 27730763 gttgctgtatctgctgaggt 27730744 Score = 196 bits (99), Expect = 5e-47 Identities = 126/135 (93%) Strand = Plus / Minus Query: 4 cgcgcggtgggagcccatgggggcccgggagtactacgactaccggcgggccatctacgg 63 |||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 27733007 cgcgaggtgggagccgatgggggcgcgggagtactacgactaccggagggccatctacgg 27732948 Query: 64 cgaaatcacgcacaaggccatcctcgtcgacgccgccggcaccctcctcgcccccaccga 123 ||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 27732947 cgacatcacccacaaggccatcctcgtcgacgccgccgggacgctcctcgcccccaccga 27732888 Query: 124 gcccatggcccaggt 138 ||||||||| ||||| Sbjct: 27732887 gcccatggcgcaggt 27732873 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 242 aggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgc 301 |||||||| ||||| || |||||||| ||||| ||||||||||| ||||| || || ||| Sbjct: 27731103 aggtatgtggatgatggtaggcccttctggcagcatatagttagctcttcaactggatgc 27731044 Query: 302 tcagatttacagtacttcgaggaactttatcattactatacaactg 347 ||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 27731043 tcagatttacagtactttgaggaactttatcagtactatacaactg 27730998 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 134 caggtgtacagaacaataggcgaaaagtatggggtgaagtactcggaggatgagatcttg 193 ||||| ||||||||||| |||||||||||||| || || ||||| ||||||||||||||| Sbjct: 27732377 caggtatacagaacaattggcgaaaagtatggagtcaactactcagaggatgagatcttg 27732318 Query: 194 atgaggtaccggcaggcatattcgcagccatggggcaaatcgcggcttaggta 246 ||||| ||| || ||| ||| ||||||||||||| | ||||||||| ||||| Sbjct: 27732317 atgagatacaggagggcttatgcgcagccatggggtagatcgcggctgaggta 27732265 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 10471841 tacagtacttcgaggaactt 10471822
>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496C02 Length = 148419 Score = 198 bits (100), Expect = 1e-47 Identities = 130/140 (92%) Strand = Plus / Minus Query: 377 gctaaatacgtttttgaagcattaagaagggctggtgtgagaacagctgttgtatccaac 436 |||||||| |||||||||||||| |||| ||||||||| | ||||||||||||||||||| Sbjct: 23262 gctaaatatgtttttgaagcattgagaaaggctggtgtaaaaacagctgttgtatccaac 23203 Query: 437 tttgacacccgcctccggccacttttacaggcactgaattgtgatcactggtttgatgcg 496 |||||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 23202 tttgacacacgtcttcggccacttttacaggccctgaattgtgatcactggtttgatgca 23143 Query: 497 gttgctgtatctgctgaggt 516 |||||||||||||||||||| Sbjct: 23142 gttgctgtatctgctgaggt 23123 Score = 196 bits (99), Expect = 5e-47 Identities = 126/135 (93%) Strand = Plus / Minus Query: 4 cgcgcggtgggagcccatgggggcccgggagtactacgactaccggcgggccatctacgg 63 |||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 25386 cgcgaggtgggagccgatgggggcgcgggagtactacgactaccggagggccatctacgg 25327 Query: 64 cgaaatcacgcacaaggccatcctcgtcgacgccgccggcaccctcctcgcccccaccga 123 ||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 25326 cgacatcacccacaaggccatcctcgtcgacgccgccgggacgctcctcgcccccaccga 25267 Query: 124 gcccatggcccaggt 138 ||||||||| ||||| Sbjct: 25266 gcccatggcgcaggt 25252 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 242 aggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgc 301 |||||||| ||||| || |||||||| ||||| ||||||||||| ||||| || || ||| Sbjct: 23482 aggtatgtggatgatggtaggcccttctggcagcatatagttagctcttcaactggatgc 23423 Query: 302 tcagatttacagtacttcgaggaactttatcattactatacaactg 347 ||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 23422 tcagatttacagtactttgaggaactttatcagtactatacaactg 23377 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 134 caggtgtacagaacaataggcgaaaagtatggggtgaagtactcggaggatgagatcttg 193 ||||| ||||||||||| |||||||||||||| || || ||||| ||||||||||||||| Sbjct: 24756 caggtatacagaacaattggcgaaaagtatggagtcaactactcagaggatgagatcttg 24697 Query: 194 atgaggtaccggcaggcatattcgcagccatggggcaaatcgcggcttaggta 246 ||||| ||| || ||| ||| ||||||||||||| | ||||||||| ||||| Sbjct: 24696 atgagatacaggagggcttatgcgcagccatggggtagatcgcggctgaggta 24644
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 198 bits (100), Expect = 1e-47 Identities = 130/140 (92%) Strand = Plus / Minus Query: 377 gctaaatacgtttttgaagcattaagaagggctggtgtgagaacagctgttgtatccaac 436 |||||||| |||||||||||||| |||| ||||||||| | ||||||||||||||||||| Sbjct: 109985 gctaaatatgtttttgaagcattgagaaaggctggtgtaaaaacagctgttgtatccaac 109926 Query: 437 tttgacacccgcctccggccacttttacaggcactgaattgtgatcactggtttgatgcg 496 |||||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 109925 tttgacacacgtcttcggccacttttacaggccctgaattgtgatcactggtttgatgca 109866 Query: 497 gttgctgtatctgctgaggt 516 |||||||||||||||||||| Sbjct: 109865 gttgctgtatctgctgaggt 109846 Score = 196 bits (99), Expect = 5e-47 Identities = 126/135 (93%) Strand = Plus / Minus Query: 4 cgcgcggtgggagcccatgggggcccgggagtactacgactaccggcgggccatctacgg 63 |||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 112109 cgcgaggtgggagccgatgggggcgcgggagtactacgactaccggagggccatctacgg 112050 Query: 64 cgaaatcacgcacaaggccatcctcgtcgacgccgccggcaccctcctcgcccccaccga 123 ||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 112049 cgacatcacccacaaggccatcctcgtcgacgccgccgggacgctcctcgcccccaccga 111990 Query: 124 gcccatggcccaggt 138 ||||||||| ||||| Sbjct: 111989 gcccatggcgcaggt 111975 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 242 aggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgc 301 |||||||| ||||| || |||||||| ||||| ||||||||||| ||||| || || ||| Sbjct: 110205 aggtatgtggatgatggtaggcccttctggcagcatatagttagctcttcaactggatgc 110146 Query: 302 tcagatttacagtacttcgaggaactttatcattactatacaactg 347 ||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 110145 tcagatttacagtactttgaggaactttatcagtactatacaactg 110100 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 134 caggtgtacagaacaataggcgaaaagtatggggtgaagtactcggaggatgagatcttg 193 ||||| ||||||||||| |||||||||||||| || || ||||| ||||||||||||||| Sbjct: 111479 caggtatacagaacaattggcgaaaagtatggagtcaactactcagaggatgagatcttg 111420 Query: 194 atgaggtaccggcaggcatattcgcagccatggggcaaatcgcggcttaggta 246 ||||| ||| || ||| ||| ||||||||||||| | ||||||||| ||||| Sbjct: 111419 atgagatacaggagggcttatgcgcagccatggggtagatcgcggctgaggta 111367
>gb|AY108297.1| Zea mays PCO134827 mRNA sequence Length = 488 Score = 157 bits (79), Expect = 4e-35 Identities = 271/335 (80%) Strand = Plus / Plus Query: 29 cgggagtactacgactaccggcgggccatctacggcgaaatcacgcacaaggccatcctc 88 |||||||||||||||||||| | | ||||||||||| |||||||| ||| ||||| Sbjct: 17 cgggagtactacgactaccgcaagtctatctacggcgacgtcacgcaccgcgccctcctc 76 Query: 89 gtcgacgccgccggcaccctcctcgcccccaccgagcccatggcccaggtgtacagaaca 148 |||||||||| |||||||||| ||| |||| || |||||| || |||||||| | | Sbjct: 77 gtcgacgccgtcggcaccctcgtcgtccccgcccagcccaccgcgcaggtgtataagagc 136 Query: 149 ataggcgaaaagtatggggtgaagtactcggaggatgagatcttgatgaggtaccggcag 208 || || || |||||||| |||||||||||||| || |||||| ||||||| ||||||| | Sbjct: 137 attggtgagaagtatggagtgaagtactcggaagacgagatcctgatgagataccggcgg 196 Query: 209 gcatattcgcagccatggggcaaatcgcggcttaggtatgtcgatgacgggaggcccttt 268 ||||| ||| |||||||| ||| || || |||||||| ||||| ||||| ||||| Sbjct: 197 gcatacgagcaaccatggggtggatcacgtctcaggtatgtggatgatgggagaaccttt 256 Query: 269 tggcaacatatagttagttcttctacaggctgctcagatttacagtacttcgaggaactt 328 ||||| || ||||| | |||||||||||| || |||||| ||||||||| |||||||| Sbjct: 257 tggcagcacatagtcacttcttctacaggatgttcagatgcacagtactttgaggaactc 316 Query: 329 tatcattactatacaactgagaaggcctggcagct 363 ||||| |||| || || || ||||||||| |||| Sbjct: 317 tatcaatactttatgacagaaaaggcctggaagct 351
>dbj|AK108402.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-G05, full insert sequence Length = 1071 Score = 129 bits (65), Expect = 1e-26 Identities = 140/165 (84%) Strand = Plus / Plus Query: 367 tgatcccgatgctaaatacgtttttgaagcattaagaagggctggtgtgagaacagctgt 426 |||||| |||||| || |||| ||| |||| ||||||| ||| ||||| | ||| ||||| Sbjct: 579 tgatcctgatgctgaaaacgtatttaaagctttaagaaaggcaggtgtcaaaactgctgt 638 Query: 427 tgtatccaactttgacacccgcctccggccacttttacaggcactgaattgtgatcactg 486 ||| ||||| ||||| ||||| || ||||| || ||||| | ||||| ||||||||||| Sbjct: 639 tgtctccaattttgatacccgtctacggcctctgttacatgttctgaagtgtgatcactg 698 Query: 487 gtttgatgcggttgctgtatctgctgaggttgcagcagaaaagcc 531 ||||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 699 gtttgatgcggttgcggtctctgctgaggttgctgcagaaaagcc 743 Score = 60.0 bits (30), Expect = 8e-06 Identities = 129/162 (79%) Strand = Plus / Plus Query: 29 cgggagtactacgactaccggcgggccatctacggcgaaatcacgcacaaggccatcctc 88 |||||||||||||||||||| | || |||||||||| |||| ||| ||| ||||| Sbjct: 332 cgggagtactacgactaccgcaagtccgtctacggcgacgtcacccaccgcgccctcctc 391 Query: 89 gtcgacgccgccggcaccctcctcgcccccaccgagcccatggcccaggtgtacagaaca 148 |||||||||| |||||||||| ||| |||| | |||||| || ||||||| | | Sbjct: 392 gtcgacgccgtcggcaccctcgtcgtccccgcgcagcccaccgctaaggtgtataagagc 451 Query: 149 ataggcgaaaagtatggggtgaagtactcggaggatgagatc 190 || || || |||||||| ||||||||||| || ||||||||| Sbjct: 452 attggtgagaagtatggagtgaagtactccgaagatgagatc 493
>gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC clone ZMMBBb0284N04, complete sequence Length = 107631 Score = 127 bits (64), Expect = 4e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 242 aggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgc 301 ||||||||||||||||| ||||||||||||||| ||||||| || || || || |||||| Sbjct: 68931 aggtatgtcgatgacggaaggcccttttggcaatatatagtgagctcatcaaccggctgc 68990 Query: 302 tcagatttacagtacttcgaggaactttatcattactatacaactgagaagg 353 |||||| ||||||||||||||||||| || || ||||| ||||||||||||| Sbjct: 68991 tcagatctacagtacttcgaggaactgtaccagtactacacaactgagaagg 69042
>gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0073M15, complete sequence Length = 143071 Score = 107 bits (54), Expect = 4e-20 Identities = 126/150 (84%) Strand = Plus / Plus Query: 367 tgatcccgatgctaaatacgtttttgaagcattaagaagggctggtgtgagaacagctgt 426 |||||| |||||| || |||| ||| |||| ||||||| ||| ||||| | ||| ||||| Sbjct: 48766 tgatcctgatgctgaaaacgtatttaaagctttaagaaaggcaggtgtcaaaactgctgt 48825 Query: 427 tgtatccaactttgacacccgcctccggccacttttacaggcactgaattgtgatcactg 486 ||| ||||| ||||| ||||| || ||||| || ||||| | ||||| ||||||||||| Sbjct: 48826 tgtctccaattttgatacccgtctacggcctctgttacatgttctgaagtgtgatcactg 48885 Query: 487 gtttgatgcggttgctgtatctgctgaggt 516 ||||||||||||||| || ||||||||||| Sbjct: 48886 gtttgatgcggttgcggtctctgctgaggt 48915 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 242 aggtatgtcgatgacgggaggcccttttggcaacatatagttagttcttctacaggctgc 301 |||||||| ||||| || || ||||||||||| |||||||| | ||||||||| ||||| Sbjct: 48558 aggtatgtggatgatggtagacccttttggcagcatatagtcacttcttctactggctgt 48617 Query: 302 tcagatttacagtacttcgaggaactttatcattactata 341 |||||||| |||||||| |||||||| ||||| ||||||| Sbjct: 48618 tcagatttgcagtactttgaggaactatatcagtactata 48657 Score = 60.0 bits (30), Expect = 8e-06 Identities = 75/90 (83%) Strand = Plus / Plus Query: 29 cgggagtactacgactaccggcgggccatctacggcgaaatcacgcacaaggccatcctc 88 |||||||||||||||||||| | || |||||||||| |||| ||| ||| ||||| Sbjct: 47106 cgggagtactacgactaccgcaagtccgtctacggcgacgtcacccaccgcgccctcctc 47165 Query: 89 gtcgacgccgccggcaccctcctcgccccc 118 |||||||||| |||||||||| ||| |||| Sbjct: 47166 gtcgacgccgtcggcaccctcgtcgtcccc 47195 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 158 aagtatggggtgaagtactcggaggatgagatc 190 |||||||| ||||||||||| || ||||||||| Sbjct: 47419 aagtatggagtgaagtactccgaagatgagatc 47451
>gb|AY022128.1| Oryza sativa microsatellite MRG4453 containing (TC)X18, closest to marker C596, genomic sequence Length = 236 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 74 cacaaggccatcctcgtcgacgccgccggcaccctcctcgcccccaccgagcccatggcc 133 |||||||||||||| || ||||||||||| || |||||||||||||||||||||||||| Sbjct: 4 cacaaggccatcctagttgacgccgccgggacgctcctcgcccccaccgagcccatggcg 63 Query: 134 caggt 138 ||||| Sbjct: 64 caggt 68
>gb|AY106595.1| Zea mays PCO125917 mRNA sequence Length = 521 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 471 tgaattgtgatcactggtttgatgcggttgctgtatctgctgaggttgcagcagaaaagc 530 |||| ||||| |||||||||||||| ||||| || ||||| |||||||||||||| |||| Sbjct: 11 tgaaatgtgaccactggtttgatgcagttgcagtctctgcagaggttgcagcagagaagc 70 Query: 531 c 531 | Sbjct: 71 c 71
>gb|AY022244.1| Oryza sativa microsatellite MRG4569 containing (TG)X18, closest to marker C596, genomic sequence Length = 236 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 107 ctcctcgcccccaccgagcccatggcccaggt 138 |||||||||||||||||||||||||| ||||| Sbjct: 1 ctcctcgcccccaccgagcccatggcgcaggt 32
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 470 ctgaattgtgatcactggtttgatgcggttgctgtatctgctgaggt 516 ||||| || ||||| || |||||||| ||||||| |||||||||||| Sbjct: 21611034 ctgaaatgcgatcattgatttgatgcagttgctgaatctgctgaggt 21611080
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 470 ctgaattgtgatcactggtttgatgcggttgctgtatctgctgaggt 516 ||||| || ||||| || |||||||| ||||||| |||||||||||| Sbjct: 21539355 ctgaaatgcgatcattgatttgatgcagttgctgaatctgctgaggt 21539401
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158019 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 470 ctgaattgtgatcactggtttgatgcggttgctgtatctgctgaggt 516 ||||| || ||||| || |||||||| ||||||| |||||||||||| Sbjct: 34855 ctgaaatgcgatcattgatttgatgcagttgctgaatctgctgaggt 34809
>dbj|D16415.1|WHTWZF1A Triticum aestivum gene for zinc-finger protein WZF1, complete cds Length = 2862 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Plus Query: 93 acgccgccggcaccctcctcgcccccaccg 122 ||||||||||| ||||||||||||||||| Sbjct: 1038 acgccgccggccacctcctcgcccccaccg 1067
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 tggtttgatgcggttgctgta 505 ||||||||||||||||||||| Sbjct: 1569995 tggtttgatgcggttgctgta 1569975
>gb|AC158357.4| Mus musculus BAC clone RP23-434L22 from chromosome 8, complete sequence Length = 217671 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tcattactatacaactgagaa 351 ||||||||||||||||||||| Sbjct: 141496 tcattactatacaactgagaa 141476
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06, complete sequence Length = 136143 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 tgctgaggttgcagcagaaaa 528 ||||||||||||||||||||| Sbjct: 16702 tgctgaggttgcagcagaaaa 16682 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 tgctgaggttgcagcagaaaa 528 ||||||||||||||||||||| Sbjct: 6550 tgctgaggttgcagcagaaaa 6530
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 tgctgaggttgcagcagaaaa 528 ||||||||||||||||||||| Sbjct: 159442 tgctgaggttgcagcagaaaa 159422
>emb|CR933522.11| Zebrafish DNA sequence from clone CH211-22N13 in linkage group 1, complete sequence Length = 121726 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 catatagttagttcttctaca 295 ||||||||||||||||||||| Sbjct: 1239 catatagttagttcttctaca 1259
>emb|CR387978.12| Zebrafish DNA sequence from clone DKEY-33M5 in linkage group 1, complete sequence Length = 208746 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 catatagttagttcttctaca 295 ||||||||||||||||||||| Sbjct: 762 catatagttagttcttctaca 742
>emb|AL356003.9| Human DNA sequence from clone RP11-33N11 on chromosome X Contains a ribonucleoprotein pseudogene and a CpG island, complete sequence Length = 46778 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 ggcaacatatagttagttctt 290 ||||||||||||||||||||| Sbjct: 7537 ggcaacatatagttagttctt 7517
>emb|AL139078.2|CJ11168X5 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 5/6 Length = 263335 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 tggtttgatgcggttgctgta 505 ||||||||||||||||||||| Sbjct: 209165 tggtttgatgcggttgctgta 209145
>gb|DQ123841.1| Agrotis segetum nucleopolyhedrovirus, complete genome Length = 147544 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 ctcgtcgacgccgccggcacc 106 ||||||||||||||||||||| Sbjct: 19292 ctcgtcgacgccgccggcacc 19272
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 tgctgaggttgcagcagaaaa 528 ||||||||||||||||||||| Sbjct: 17639944 tgctgaggttgcagcagaaaa 17639924 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 tgctgaggttgcagcagaaaa 528 ||||||||||||||||||||| Sbjct: 17629792 tgctgaggttgcagcagaaaa 17629772
>dbj|AK069708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031M23, full insert sequence Length = 2455 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 tgctgaggttgcagcagaaaa 528 ||||||||||||||||||||| Sbjct: 1780 tgctgaggttgcagcagaaaa 1800
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 78 aggccatcctcgtcgacgccgccggcacc 106 |||||| ||||| |||||||||||||||| Sbjct: 4230966 aggccaacctcggcgacgccgccggcacc 4230994
>gb|BC085705.1| Rattus norvegicus staufen, RNA binding protein, homolog 2 (Drosophila), mRNA (cDNA clone MGC:93196 IMAGE:7190916), complete cds Length = 2328 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 91 cgacgccgccggcaccctcctcgccccc 118 ||||||||||||| ||||||||| |||| Sbjct: 74 cgacgccgccggctccctcctcggcccc 47
>gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094P07, complete sequence Length = 162311 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 99871 tacagtacttcgaggaactt 99890
>ref|XM_364536.1| Magnaporthe grisea 70-15 hypothetical protein (MG09390.4) partial mRNA Length = 1890 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 caaggccatcctcgtcgacg 95 |||||||||||||||||||| Sbjct: 1002 caaggccatcctcgtcgacg 1021
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 12052444 tacagtacttcgaggaactt 12052425
>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0015J03, complete sequence Length = 135940 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 133537 tacagtacttcgaggaactt 133518
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 gccatcctcgtcgacgccgccggc 103 |||||||||| ||||||||||||| Sbjct: 2163710 gccatcctcgccgacgccgccggc 2163687 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 gccatcctcgtcgacgccgccggc 103 |||||||||| ||||||||||||| Sbjct: 2160278 gccatcctcgccgacgccgccggc 2160255 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 gccatcctcgtcgacgccgccggc 103 |||||||||| ||||||||||||| Sbjct: 2157731 gccatcctcgccgacgccgccggc 2157754 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 gccatcctcgtcgacgccgccggc 103 |||||||||| ||||||||||||| Sbjct: 2157425 gccatcctcgccgacgccgccggc 2157448 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 gccatcctcgtcgacgccgccggc 103 |||||||||| ||||||||||||| Sbjct: 1384504 gccatcctcgccgacgccgccggc 1384481 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 gccatcctcgtcgacgccgccggc 103 |||||||||| ||||||||||||| Sbjct: 1384198 gccatcctcgccgacgccgccggc 1384175 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 gccatcctcgtcgacgccgccggc 103 |||||||||| ||||||||||||| Sbjct: 1366394 gccatcctcgccgacgccgccggc 1366371 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 gccatcctcgtcgacgccgccggc 103 |||||||||| ||||||||||||| Sbjct: 1364252 gccatcctcgccgacgccgccggc 1364229
>gb|AC093801.3| Homo sapiens BAC clone RP11-313E19 from 4, complete sequence Length = 126929 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ggcaccctcctcgcccccac 120 |||||||||||||||||||| Sbjct: 28003 ggcaccctcctcgcccccac 28022
>gb|AC078944.5|AC078944 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0089D15, from Chromosome 10, complete sequence Length = 164679 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 155752 tacagtacttcgaggaactt 155771
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 5197528 tacagtacttcgaggaactt 5197509
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 4158923 tacagtacttcgaggaactt 4158942
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 cgacgccgccggcaccctcctcgc 114 ||||||||||||| |||||||||| Sbjct: 1446329 cgacgccgccggctccctcctcgc 1446352
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 12049207 tacagtacttcgaggaactt 12049188
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 73024 tacagtacttcgaggaactt 73005
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 catcctcgtcgacgccgccg 101 |||||||||||||||||||| Sbjct: 4368832 catcctcgtcgacgccgccg 4368813
>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1512_E04 Length = 157848 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 cgacgccgccggcaccctcctcgc 114 ||||||||||||| |||||||||| Sbjct: 64442 cgacgccgccggctccctcctcgc 64465
>dbj|AP005104.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0042E08 Length = 166257 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 23170 tacagtacttcgaggaactt 23151
>dbj|AK107519.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F07, full insert sequence Length = 2145 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 12 tacagtacttcgaggaactt 31
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 aaggcctggcagctcattga 369 |||||||||||||||||||| Sbjct: 177386 aaggcctggcagctcattga 177405
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 4159744 tacagtacttcgaggaactt 4159763
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tacagtacttcgaggaactt 328 |||||||||||||||||||| Sbjct: 5264005 tacagtacttcgaggaactt 5263986 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,657,505 Number of Sequences: 3902068 Number of extensions: 3657505 Number of successful extensions: 79099 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78372 Number of HSP's gapped (non-prelim): 721 length of query: 531 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 508 effective length of database: 17,143,297,704 effective search space: 8708795233632 effective search space used: 8708795233632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
