ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal13b22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DDX51_HUMAN (Q8N8A6) ATP-dependent RNA helicase DDX51 (EC 3.6.1.... 30 7.6
2IF2_PROMM (Q7V5M4) Translation initiation factor IF-2 30 7.6
3PP2C3_YEAST (P34221) Protein phosphatase 2C homolog 3 (EC 3.1.3.... 29 9.9

>DDX51_HUMAN (Q8N8A6) ATP-dependent RNA helicase DDX51 (EC 3.6.1.-) (DEAD box|
           protein 51)
          Length = 666

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
 Frame = -1

Query: 159 LAAAACGFLAGRG-------CVSLSWGSG 94
           L +AACGFL GRG       CVS   GSG
Sbjct: 233 LESAACGFLVGRGGYRPSDLCVSAPTGSG 261



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>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2|
          Length = 1125

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 589 RPFDIPISIAGTPSQETPTMPTRHSSNRPAGYEP 488
           RP + PIS    PS+  PT PT  S+N+P+   P
Sbjct: 150 RPINAPISRPAIPSR--PTAPTPRSANKPSSPVP 181



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>PP2C3_YEAST (P34221) Protein phosphatase 2C homolog 3 (EC 3.1.3.16) (PP2C-3)|
          Length = 468

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 453 CGDIMLAYIKLHGSYPAGLLEECLV 527
           CG  M++ +K   S+ +G+LE+CL+
Sbjct: 73  CGSKMISILKKQESFKSGMLEQCLI 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,765,945
Number of Sequences: 219361
Number of extensions: 1582294
Number of successful extensions: 5348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5345
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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