ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal12m15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48) 28 4.9
2YL_DROME (P98163) Putative vitellogenin receptor precursor (Prot... 28 4.9
3PTN14_MOUSE (Q62130) Tyrosine-protein phosphatase non-receptor t... 28 8.3
4PTN14_HUMAN (Q15678) Tyrosine-protein phosphatase non-receptor t... 28 8.3

>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1874

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -1

Query: 165 NSPKPNKQTPTYSSTLP 115
           N P PNK TPT SST P
Sbjct: 693 NPPAPNKPTPTSSSTTP 709



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>YL_DROME (P98163) Putative vitellogenin receptor precursor (Protein yolkless)|
            (YL)
          Length = 1984

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 30   DYGIRCLCQNKYRISG--CCHVLGSETFVLLAMCWSKLE 140
            DYG  C+C N+    G  C H  G+E  VL A+   +LE
Sbjct: 1751 DYGYECMCGNRLVAEGERCPHGSGNEVAVLGAVNSLELE 1789



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>PTN14_MOUSE (Q62130) Tyrosine-protein phosphatase non-receptor type 14 (EC|
           3.1.3.48) (Protein-tyrosine phosphatase PTP36)
          Length = 1189

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 207 YKSYIESTIDCMS*NSPKPNKQTPTYS-STLPRAQKF 100
           +K Y ++ I     NSP P ++ PT+S S+LPR Q +
Sbjct: 299 HKFYKQNKICTEQSNSPPPIRRQPTWSRSSLPRQQPY 335



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>PTN14_HUMAN (Q15678) Tyrosine-protein phosphatase non-receptor type 14 (EC|
           3.1.3.48) (Protein-tyrosine phosphatase pez)
          Length = 1187

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 207 YKSYIESTIDCMS*NSPKPNKQTPTYS-STLPRAQKF 100
           +K Y ++ I     NSP P ++ PT+S S+LPR Q +
Sbjct: 299 HKFYKQNKICTEQSNSPPPIRRQPTWSRSSLPRQQPY 335


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,284,495
Number of Sequences: 219361
Number of extensions: 565026
Number of successful extensions: 1190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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