| Clone Name | baal12j07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY110851.1| Zea mays CL3036_1 mRNA sequence Length = 691 Score = 93.7 bits (47), Expect = 2e-16 Identities = 104/123 (84%) Strand = Plus / Plus Query: 31 ctgggccctctcgtccagcttccggatccttccggcgagggtgcagaggtagtcctgggc 90 ||||||||||||||| ||| ||||||||||| || |||||||||||||||||||| || Sbjct: 395 ctgggccctctcgtctagcctccggatccttgaagcaagggtgcagaggtagtcctgcgc 454 Query: 91 cttgtgcccctcgccagaaaggccggtcagttcggggaccttccacctgccaacgaggaa 150 ||||| |||||| || || || || ||||| || | |||||||||||| |||| ||||| Sbjct: 455 cttgttcccctcacccgacagaccagtcaggtccgccaccttccacctgtcaacaaggaa 514 Query: 151 ctc 153 ||| Sbjct: 515 ctc 517
>ref|XM_463624.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1191 Score = 73.8 bits (37), Expect = 1e-10 Identities = 118/145 (81%) Strand = Plus / Minus Query: 9 taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68 |||| |||| |||||||| ||| || |||||||| |||||| | | |||||| | || | Sbjct: 1147 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 1088 Query: 69 gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128 ||||||| |||||||| || ||||||| ||||||| ||| ||||| ||||| || | | Sbjct: 1087 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 1028 Query: 129 ccttccacctgccaacgaggaactc 153 ||||||||||| |||||||||||| Sbjct: 1027 tcttccacctgctaacgaggaactc 1003
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 1e-10 Identities = 118/145 (81%) Strand = Plus / Plus Query: 9 taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68 |||| |||| |||||||| ||| || |||||||| |||||| | | |||||| | || | Sbjct: 40140449 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 40140508 Query: 69 gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128 ||||||| |||||||| || ||||||| ||||||| ||| ||||| ||||| || | | Sbjct: 40140509 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 40140568 Query: 129 ccttccacctgccaacgaggaactc 153 ||||||||||| |||||||||||| Sbjct: 40140569 tcttccacctgctaacgaggaactc 40140593
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 73.8 bits (37), Expect = 1e-10 Identities = 118/145 (81%) Strand = Plus / Plus Query: 9 taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68 |||| |||| |||||||| ||| || |||||||| |||||| | | |||||| | || | Sbjct: 83533 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 83592 Query: 69 gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128 ||||||| |||||||| || ||||||| ||||||| ||| ||||| ||||| || | | Sbjct: 83593 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 83652 Query: 129 ccttccacctgccaacgaggaactc 153 ||||||||||| |||||||||||| Sbjct: 83653 tcttccacctgctaacgaggaactc 83677
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 73.8 bits (37), Expect = 1e-10 Identities = 118/145 (81%) Strand = Plus / Plus Query: 9 taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68 |||| |||| |||||||| ||| || |||||||| |||||| | | |||||| | || | Sbjct: 6227 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 6286 Query: 69 gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128 ||||||| |||||||| || ||||||| ||||||| ||| ||||| ||||| || | | Sbjct: 6287 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 6346 Query: 129 ccttccacctgccaacgaggaactc 153 ||||||||||| |||||||||||| Sbjct: 6347 tcttccacctgctaacgaggaactc 6371
>dbj|AK103568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132M08, full insert sequence Length = 1627 Score = 73.8 bits (37), Expect = 1e-10 Identities = 118/145 (81%) Strand = Plus / Minus Query: 9 taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68 |||| |||| |||||||| ||| || |||||||| |||||| | | |||||| | || | Sbjct: 1255 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 1196 Query: 69 gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128 ||||||| |||||||| || ||||||| ||||||| ||| ||||| ||||| || | | Sbjct: 1195 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 1136 Query: 129 ccttccacctgccaacgaggaactc 153 ||||||||||| |||||||||||| Sbjct: 1135 tcttccacctgctaacgaggaactc 1111
>dbj|AK060087.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G08, full insert sequence Length = 1130 Score = 73.8 bits (37), Expect = 1e-10 Identities = 118/145 (81%) Strand = Plus / Minus Query: 9 taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68 |||| |||| |||||||| ||| || |||||||| |||||| | | |||||| | || | Sbjct: 809 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 750 Query: 69 gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128 ||||||| |||||||| || ||||||| ||||||| ||| ||||| ||||| || | | Sbjct: 749 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 690 Query: 129 ccttccacctgccaacgaggaactc 153 ||||||||||| |||||||||||| Sbjct: 689 tcttccacctgctaacgaggaactc 665
>dbj|AK058979.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D09, full insert sequence Length = 1607 Score = 73.8 bits (37), Expect = 1e-10 Identities = 118/145 (81%) Strand = Plus / Minus Query: 9 taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68 |||| |||| |||||||| ||| || |||||||| |||||| | | |||||| | || | Sbjct: 1246 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 1187 Query: 69 gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128 ||||||| |||||||| || ||||||| ||||||| ||| ||||| ||||| || | | Sbjct: 1186 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 1127 Query: 129 ccttccacctgccaacgaggaactc 153 ||||||||||| |||||||||||| Sbjct: 1126 tcttccacctgctaacgaggaactc 1102
>gb|DQ192664.1| Zea mays clone sad-By804 putative stearoyl-acyl-carrier protein desaturase gene, complete cds Length = 4095 Score = 65.9 bits (33), Expect = 4e-08 Identities = 102/125 (81%) Strand = Plus / Minus Query: 31 ctgggccctctcgtccagcttccggatccttccggcgagggtgcagaggtagtcctgggc 90 |||||||||||| |||||| ||| ||||||| || |||||||| ||||||||||| || Sbjct: 3504 ctgggccctctcctccagcctcctgatccttgaagcaagggtgcaaaggtagtcctgcgc 3445 Query: 91 cttgtgcccctcgccagaaaggccggtcagttcggggaccttccacctgccaacgaggaa 150 ||||| ||| || || || || || ||||| | | |||||||||||| | |||||||| Sbjct: 3444 cttgttcccttcacccgacagaccagtcaggttcgccaccttccacctgtcgacgaggaa 3385 Query: 151 ctcga 155 ||||| Sbjct: 3384 ctcga 3380
>gb|DQ192663.1| Zea mays clone sad-B73 putative stearoyl-acyl-carrier protein desaturase gene, complete cds Length = 4095 Score = 58.0 bits (29), Expect = 9e-06 Identities = 101/125 (80%) Strand = Plus / Minus Query: 31 ctgggccctctcgtccagcttccggatccttccggcgagggtgcagaggtagtcctgggc 90 |||||||||||| |||||| ||| ||||||| || |||||||| ||||||||||| || Sbjct: 3504 ctgggccctctcctccagcctcctgatccttgaagcaagggtgcaaaggtagtcctgcgc 3445 Query: 91 cttgtgcccctcgccagaaaggccggtcagttcggggaccttccacctgccaacgaggaa 150 ||||| ||| || || || || || ||||| | |||||||||||| | |||||||| Sbjct: 3444 cttgttcccttcacccgacagaccagtcaggttcaccaccttccacctgtcgacgaggaa 3385 Query: 151 ctcga 155 ||||| Sbjct: 3384 ctcga 3380
>gb|BT018348.1| Zea mays clone EL01T0403E07.c mRNA sequence Length = 489 Score = 50.1 bits (25), Expect = 0.002 Identities = 55/65 (84%) Strand = Plus / Minus Query: 31 ctgggccctctcgtccagcttccggatccttccggcgagggtgcagaggtagtcctgggc 90 |||||||||||| |||||| ||| ||| ||| || |||||||| ||||||||||| || Sbjct: 75 ctgggccctctcctccagcctcctgattcttgaagcaagggtgcaaaggtagtcctgcgc 16 Query: 91 cttgt 95 ||||| Sbjct: 15 cttgt 11
>gb|AY104235.1| Zea mays PCO105183 mRNA sequence Length = 1780 Score = 50.1 bits (25), Expect = 0.002 Identities = 100/125 (80%) Strand = Plus / Minus Query: 31 ctgggccctctcgtccagcttccggatccttccggcgagggtgcagaggtagtcctgggc 90 |||||||||||| |||||| ||| ||| ||| || |||||||| ||||||||||| || Sbjct: 1372 ctgggccctctcctccagcctcctgattcttgaagcaagggtgcaaaggtagtcctgcgc 1313 Query: 91 cttgtgcccctcgccagaaaggccggtcagttcggggaccttccacctgccaacgaggaa 150 ||||| ||| || || || || || ||||| | |||||||||||| | |||||||| Sbjct: 1312 cttgttcccttcacccgacagaccagtcaggctcgccaccttccacctgtcgacgaggaa 1253 Query: 151 ctcga 155 ||||| Sbjct: 1252 ctcga 1248
>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 Length = 1913118 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctgggccctctcgtccagct 50 |||||||||||||||||||| Sbjct: 1496118 ctgggccctctcgtccagct 1496137
>gb|AE004660.1| Pseudomonas aeruginosa PAO1, section 221 of 529 of the complete genome Length = 10977 Score = 40.1 bits (20), Expect = 2.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 gagggtgcagaggtagtcctgggc 90 ||||||| |||||||||||||||| Sbjct: 5761 gagggtgtagaggtagtcctgggc 5738
>ref|XM_588354.2| PREDICTED: Bos taurus similar to obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF (LOC511087), mRNA Length = 4626 Score = 38.2 bits (19), Expect = 7.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 94 gtgcccctcgccagaaaggccggtcag 120 |||||||||||||| ||||| |||||| Sbjct: 4446 gtgcccctcgccagcaaggcaggtcag 4472
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 22 ggctcgcgactgggccctctcgt 44 ||||||||||||||||| ||||| Sbjct: 226422 ggctcgcgactgggcccgctcgt 226444
>gb|AC132166.1| Drosophila pseudoobscura FOSMID DPSF1-548A16 (Children's Hospital Oakland Research Institute Drosophila pseudoobscura FOSMID Library) complete sequence Length = 40715 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 tctcgtccagcttccggat 57 ||||||||||||||||||| Sbjct: 3004 tctcgtccagcttccggat 3022
>gb|AY271636.1| Amycolatopsis lactamdurans isolate AAL24 putative NRPS gene, partial cds Length = 713 Score = 38.2 bits (19), Expect = 7.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 77 aggtagtcctgggccttgtgcccctcg 103 ||||||||| || |||||||||||||| Sbjct: 247 aggtagtccgggtccttgtgcccctcg 221
>gb|AC105213.5| Homo sapiens chromosome 8, clone RP11-346A14, complete sequence Length = 200131 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 ctctcgtccagcttccgga 56 ||||||||||||||||||| Sbjct: 59059 ctctcgtccagcttccgga 59077
>gb|AY088096.1| Arabidopsis thaliana clone 41275 mRNA, complete sequence Length = 1567 Score = 38.2 bits (19), Expect = 7.9 Identities = 34/39 (87%) Strand = Plus / Minus Query: 74 cagaggtagtcctgggccttgtgcccctcgccagaaagg 112 |||||||||||||||||| ||| ||| || | ||||||| Sbjct: 1225 cagaggtagtcctgggccctgttcccttcactagaaagg 1187 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 710,494 Number of Sequences: 3902068 Number of extensions: 710494 Number of successful extensions: 47226 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47177 Number of HSP's gapped (non-prelim): 49 length of query: 164 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 142 effective length of database: 17,147,199,772 effective search space: 2434902367624 effective search space used: 2434902367624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)