ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal12j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY110851.1| Zea mays CL3036_1 mRNA sequence 94 2e-16
2ref|XM_463624.1| Oryza sativa (japonica cultivar-group), predic... 74 1e-10
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 74 1e-10
4dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic D... 74 1e-10
5dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 74 1e-10
6dbj|AK103568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 1e-10
7dbj|AK060087.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 1e-10
8dbj|AK058979.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 1e-10
9gb|DQ192664.1| Zea mays clone sad-By804 putative stearoyl-acyl-c... 66 4e-08
10gb|DQ192663.1| Zea mays clone sad-B73 putative stearoyl-acyl-car... 58 9e-06
11gb|BT018348.1| Zea mays clone EL01T0403E07.c mRNA sequence 50 0.002
12gb|AY104235.1| Zea mays PCO105183 mRNA sequence 50 0.002
13dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 40 2.0
14gb|AE004660.1| Pseudomonas aeruginosa PAO1, section 221 of 529 o... 40 2.0
15ref|XM_588354.2| PREDICTED: Bos taurus similar to obscurin, cyto... 38 7.9
16emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ... 38 7.9
17gb|AC132166.1| Drosophila pseudoobscura FOSMID DPSF1-548A16 (Ch... 38 7.9
18gb|AY271636.1| Amycolatopsis lactamdurans isolate AAL24 putative... 38 7.9
19gb|AC105213.5| Homo sapiens chromosome 8, clone RP11-346A14, com... 38 7.9
20gb|AY088096.1| Arabidopsis thaliana clone 41275 mRNA, complete s... 38 7.9

>gb|AY110851.1| Zea mays CL3036_1 mRNA sequence
          Length = 691

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 104/123 (84%)
 Strand = Plus / Plus

                                                                       
Query: 31  ctgggccctctcgtccagcttccggatccttccggcgagggtgcagaggtagtcctgggc 90
           ||||||||||||||| ||| |||||||||||   || |||||||||||||||||||| ||
Sbjct: 395 ctgggccctctcgtctagcctccggatccttgaagcaagggtgcagaggtagtcctgcgc 454

                                                                       
Query: 91  cttgtgcccctcgccagaaaggccggtcagttcggggaccttccacctgccaacgaggaa 150
           ||||| |||||| || || || || ||||| || |  |||||||||||| |||| |||||
Sbjct: 455 cttgttcccctcacccgacagaccagtcaggtccgccaccttccacctgtcaacaaggaa 514

              
Query: 151 ctc 153
           |||
Sbjct: 515 ctc 517



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>ref|XM_463624.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1191

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 118/145 (81%)
 Strand = Plus / Minus

                                                                        
Query: 9    taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68
            |||| |||| |||||||| ||| || |||||||| |||||| | | ||||||  | || |
Sbjct: 1147 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 1088

                                                                        
Query: 69   gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128
            ||||||| |||||||| || |||||||  ||||||| ||| ||||| ||||| || |  |
Sbjct: 1087 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 1028

                                     
Query: 129  ccttccacctgccaacgaggaactc 153
             ||||||||||| ||||||||||||
Sbjct: 1027 tcttccacctgctaacgaggaactc 1003



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 118/145 (81%)
 Strand = Plus / Plus

                                                                            
Query: 9        taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68
                |||| |||| |||||||| ||| || |||||||| |||||| | | ||||||  | || |
Sbjct: 40140449 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 40140508

                                                                            
Query: 69       gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128
                ||||||| |||||||| || |||||||  ||||||| ||| ||||| ||||| || |  |
Sbjct: 40140509 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 40140568

                                         
Query: 129      ccttccacctgccaacgaggaactc 153
                 ||||||||||| ||||||||||||
Sbjct: 40140569 tcttccacctgctaacgaggaactc 40140593



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>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0678F11
          Length = 154292

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 118/145 (81%)
 Strand = Plus / Plus

                                                                         
Query: 9     taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68
             |||| |||| |||||||| ||| || |||||||| |||||| | | ||||||  | || |
Sbjct: 83533 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 83592

                                                                         
Query: 69    gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128
             ||||||| |||||||| || |||||||  ||||||| ||| ||||| ||||| || |  |
Sbjct: 83593 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 83652

                                      
Query: 129   ccttccacctgccaacgaggaactc 153
              ||||||||||| ||||||||||||
Sbjct: 83653 tcttccacctgctaacgaggaactc 83677



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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1793G04
          Length = 156714

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 118/145 (81%)
 Strand = Plus / Plus

                                                                        
Query: 9    taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68
            |||| |||| |||||||| ||| || |||||||| |||||| | | ||||||  | || |
Sbjct: 6227 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 6286

                                                                        
Query: 69   gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128
            ||||||| |||||||| || |||||||  ||||||| ||| ||||| ||||| || |  |
Sbjct: 6287 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 6346

                                     
Query: 129  ccttccacctgccaacgaggaactc 153
             ||||||||||| ||||||||||||
Sbjct: 6347 tcttccacctgctaacgaggaactc 6371



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>dbj|AK103568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132M08, full
            insert sequence
          Length = 1627

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 118/145 (81%)
 Strand = Plus / Minus

                                                                        
Query: 9    taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68
            |||| |||| |||||||| ||| || |||||||| |||||| | | ||||||  | || |
Sbjct: 1255 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 1196

                                                                        
Query: 69   gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128
            ||||||| |||||||| || |||||||  ||||||| ||| ||||| ||||| || |  |
Sbjct: 1195 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 1136

                                     
Query: 129  ccttccacctgccaacgaggaactc 153
             ||||||||||| ||||||||||||
Sbjct: 1135 tcttccacctgctaacgaggaactc 1111



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>dbj|AK060087.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G08, full
           insert sequence
          Length = 1130

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 118/145 (81%)
 Strand = Plus / Minus

                                                                       
Query: 9   taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68
           |||| |||| |||||||| ||| || |||||||| |||||| | | ||||||  | || |
Sbjct: 809 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 750

                                                                       
Query: 69  gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128
           ||||||| |||||||| || |||||||  ||||||| ||| ||||| ||||| || |  |
Sbjct: 749 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 690

                                    
Query: 129 ccttccacctgccaacgaggaactc 153
            ||||||||||| ||||||||||||
Sbjct: 689 tcttccacctgctaacgaggaactc 665



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>dbj|AK058979.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D09, full
            insert sequence
          Length = 1607

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 118/145 (81%)
 Strand = Plus / Minus

                                                                        
Query: 9    taccggcttgcttggctcgcgactgggccctctcgtccagcttccggatccttccggcga 68
            |||| |||| |||||||| ||| || |||||||| |||||| | | ||||||  | || |
Sbjct: 1246 taccagctttcttggctctcgattgtgccctctcatccagccttctgatcctagcagcaa 1187

                                                                        
Query: 69   gggtgcagaggtagtcctgggccttgtgcccctcgccagaaaggccggtcagttcgggga 128
            ||||||| |||||||| || |||||||  ||||||| ||| ||||| ||||| || |  |
Sbjct: 1186 gggtgcaaaggtagtcttgcgccttgtttccctcgctagataggccagtcaggtcagata 1127

                                     
Query: 129  ccttccacctgccaacgaggaactc 153
             ||||||||||| ||||||||||||
Sbjct: 1126 tcttccacctgctaacgaggaactc 1102



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>gb|DQ192664.1| Zea mays clone sad-By804 putative stearoyl-acyl-carrier protein
            desaturase gene, complete cds
          Length = 4095

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 102/125 (81%)
 Strand = Plus / Minus

                                                                        
Query: 31   ctgggccctctcgtccagcttccggatccttccggcgagggtgcagaggtagtcctgggc 90
            |||||||||||| |||||| ||| |||||||   || |||||||| ||||||||||| ||
Sbjct: 3504 ctgggccctctcctccagcctcctgatccttgaagcaagggtgcaaaggtagtcctgcgc 3445

                                                                        
Query: 91   cttgtgcccctcgccagaaaggccggtcagttcggggaccttccacctgccaacgaggaa 150
            ||||| ||| || || || || || ||||| |  |  |||||||||||| | ||||||||
Sbjct: 3444 cttgttcccttcacccgacagaccagtcaggttcgccaccttccacctgtcgacgaggaa 3385

                 
Query: 151  ctcga 155
            |||||
Sbjct: 3384 ctcga 3380



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>gb|DQ192663.1| Zea mays clone sad-B73 putative stearoyl-acyl-carrier protein
            desaturase gene, complete cds
          Length = 4095

 Score = 58.0 bits (29), Expect = 9e-06
 Identities = 101/125 (80%)
 Strand = Plus / Minus

                                                                        
Query: 31   ctgggccctctcgtccagcttccggatccttccggcgagggtgcagaggtagtcctgggc 90
            |||||||||||| |||||| ||| |||||||   || |||||||| ||||||||||| ||
Sbjct: 3504 ctgggccctctcctccagcctcctgatccttgaagcaagggtgcaaaggtagtcctgcgc 3445

                                                                        
Query: 91   cttgtgcccctcgccagaaaggccggtcagttcggggaccttccacctgccaacgaggaa 150
            ||||| ||| || || || || || ||||| |     |||||||||||| | ||||||||
Sbjct: 3444 cttgttcccttcacccgacagaccagtcaggttcaccaccttccacctgtcgacgaggaa 3385

                 
Query: 151  ctcga 155
            |||||
Sbjct: 3384 ctcga 3380



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>gb|BT018348.1| Zea mays clone EL01T0403E07.c mRNA sequence
          Length = 489

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                      
Query: 31 ctgggccctctcgtccagcttccggatccttccggcgagggtgcagaggtagtcctgggc 90
          |||||||||||| |||||| ||| ||| |||   || |||||||| ||||||||||| ||
Sbjct: 75 ctgggccctctcctccagcctcctgattcttgaagcaagggtgcaaaggtagtcctgcgc 16

               
Query: 91 cttgt 95
          |||||
Sbjct: 15 cttgt 11



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>gb|AY104235.1| Zea mays PCO105183 mRNA sequence
          Length = 1780

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 100/125 (80%)
 Strand = Plus / Minus

                                                                        
Query: 31   ctgggccctctcgtccagcttccggatccttccggcgagggtgcagaggtagtcctgggc 90
            |||||||||||| |||||| ||| ||| |||   || |||||||| ||||||||||| ||
Sbjct: 1372 ctgggccctctcctccagcctcctgattcttgaagcaagggtgcaaaggtagtcctgcgc 1313

                                                                        
Query: 91   cttgtgcccctcgccagaaaggccggtcagttcggggaccttccacctgccaacgaggaa 150
            ||||| ||| || || || || || |||||    |  |||||||||||| | ||||||||
Sbjct: 1312 cttgttcccttcacccgacagaccagtcaggctcgccaccttccacctgtcgacgaggaa 1253

                 
Query: 151  ctcga 155
            |||||
Sbjct: 1252 ctcga 1248



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>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009
          Length = 1913118

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 31      ctgggccctctcgtccagct 50
               ||||||||||||||||||||
Sbjct: 1496118 ctgggccctctcgtccagct 1496137



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>gb|AE004660.1| Pseudomonas aeruginosa PAO1, section 221 of 529 of the complete
            genome
          Length = 10977

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 67   gagggtgcagaggtagtcctgggc 90
            ||||||| ||||||||||||||||
Sbjct: 5761 gagggtgtagaggtagtcctgggc 5738



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>ref|XM_588354.2| PREDICTED: Bos taurus similar to obscurin, cytoskeletal calmodulin
            and titin-interacting RhoGEF (LOC511087), mRNA
          Length = 4626

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 94   gtgcccctcgccagaaaggccggtcag 120
            |||||||||||||| ||||| ||||||
Sbjct: 4446 gtgcccctcgccagcaaggcaggtcag 4472



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>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 22     ggctcgcgactgggccctctcgt 44
              ||||||||||||||||| |||||
Sbjct: 226422 ggctcgcgactgggcccgctcgt 226444



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>gb|AC132166.1| Drosophila pseudoobscura  FOSMID DPSF1-548A16 (Children's Hospital
            Oakland Research Institute Drosophila pseudoobscura
            FOSMID Library) complete sequence
          Length = 40715

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 39   tctcgtccagcttccggat 57
            |||||||||||||||||||
Sbjct: 3004 tctcgtccagcttccggat 3022



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>gb|AY271636.1| Amycolatopsis lactamdurans isolate AAL24 putative NRPS gene,
           partial cds
          Length = 713

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 77  aggtagtcctgggccttgtgcccctcg 103
           ||||||||| || ||||||||||||||
Sbjct: 247 aggtagtccgggtccttgtgcccctcg 221



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>gb|AC105213.5| Homo sapiens chromosome 8, clone RP11-346A14, complete sequence
          Length = 200131

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    ctctcgtccagcttccgga 56
             |||||||||||||||||||
Sbjct: 59059 ctctcgtccagcttccgga 59077



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>gb|AY088096.1| Arabidopsis thaliana clone 41275 mRNA, complete sequence
          Length = 1567

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 34/39 (87%)
 Strand = Plus / Minus

                                                   
Query: 74   cagaggtagtcctgggccttgtgcccctcgccagaaagg 112
            |||||||||||||||||| ||| ||| || | |||||||
Sbjct: 1225 cagaggtagtcctgggccctgttcccttcactagaaagg 1187


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 710,494
Number of Sequences: 3902068
Number of extensions: 710494
Number of successful extensions: 47226
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47177
Number of HSP's gapped (non-prelim): 49
length of query: 164
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 142
effective length of database: 17,147,199,772
effective search space: 2434902367624
effective search space used: 2434902367624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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