| Clone Name | baal12i21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467558.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1454 Score = 129 bits (65), Expect = 1e-26 Identities = 117/135 (86%) Strand = Plus / Plus Query: 1 cattggtatggntatgttgctcctgntgatgtgcctgtgttactgcgtcaacatattgga 60 ||||||||||| |||||| |||||| |||||||||||| || || | | ||||||||||| Sbjct: 796 cattggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattgga 855 Query: 61 caaggagagattgtgggccatctgtggaggggccagttgggtttgtctgaagagcagcag 120 ||||||||||| |||| |||||| |||||||| ||| |||||||||||||||| ||||| Sbjct: 856 caaggagagatcgtggaccatctatggaggggtcagatgggtttgtctgaagaagagcag 915 Query: 121 aaaaaagctctggag 135 | ||||| |||||| Sbjct: 916 aggaaagccctggag 930 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 218 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 277 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1001 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1057 Query: 278 gctgccaaagtgatctgcca 297 ||||||| |||||||||||| Sbjct: 1058 gctgccagagtgatctgcca 1077 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 412 atgcccacctggtttgagacctgggacaggtctgacacctacaccactcttgctgttgtt 471 ||||| |||||||||||||| ||||| | | |||||||||| | |||||| | ||||| Sbjct: 1186 atgccaacctggtttgagacatgggaaacggctgacacctatgctgctcttggtattgtt 1245 Query: 472 gccgctgctgcaacggcgttcgccgctttcagg 504 || ||||||||| ||| ||||| |||||||||| Sbjct: 1246 gcagctgctgcatcggtgttcgtcgctttcagg 1278
>ref|XM_506948.1| PREDICTED Oryza sativa (japonica cultivar-group), P0685G12.41 mRNA Length = 1611 Score = 129 bits (65), Expect = 1e-26 Identities = 117/135 (86%) Strand = Plus / Plus Query: 1 cattggtatggntatgttgctcctgntgatgtgcctgtgttactgcgtcaacatattgga 60 ||||||||||| |||||| |||||| |||||||||||| || || | | ||||||||||| Sbjct: 795 cattggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattgga 854 Query: 61 caaggagagattgtgggccatctgtggaggggccagttgggtttgtctgaagagcagcag 120 ||||||||||| |||| |||||| |||||||| ||| |||||||||||||||| ||||| Sbjct: 855 caaggagagatcgtggaccatctatggaggggtcagatgggtttgtctgaagaagagcag 914 Query: 121 aaaaaagctctggag 135 | ||||| |||||| Sbjct: 915 aggaaagccctggag 929 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 218 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 277 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1000 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1056 Query: 278 gctgccaaagtgatctgcca 297 ||||||| |||||||||||| Sbjct: 1057 gctgccagagtgatctgcca 1076 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 412 atgcccacctggtttgagacctgggacaggtctgacacctacaccactcttgctgttgtt 471 ||||| |||||||||||||| ||||| | | |||||||||| | |||||| | ||||| Sbjct: 1185 atgccaacctggtttgagacatgggaaacggctgacacctatgctgctcttggtattgtt 1244 Query: 472 gccgctgctgcaacggcgttcgccgctttcagg 504 || ||||||||| ||| ||||| |||||||||| Sbjct: 1245 gcagctgctgcatcggtgttcgtcgctttcagg 1277
>dbj|AK104276.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A01, full insert sequence Length = 1454 Score = 129 bits (65), Expect = 1e-26 Identities = 117/135 (86%) Strand = Plus / Plus Query: 1 cattggtatggntatgttgctcctgntgatgtgcctgtgttactgcgtcaacatattgga 60 ||||||||||| |||||| |||||| |||||||||||| || || | | ||||||||||| Sbjct: 796 cattggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattgga 855 Query: 61 caaggagagattgtgggccatctgtggaggggccagttgggtttgtctgaagagcagcag 120 ||||||||||| |||| |||||| |||||||| ||| |||||||||||||||| ||||| Sbjct: 856 caaggagagatcgtggaccatctatggaggggtcagatgggtttgtctgaagaagagcag 915 Query: 121 aaaaaagctctggag 135 | ||||| |||||| Sbjct: 916 aggaaagccctggag 930 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 218 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 277 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1001 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1057 Query: 278 gctgccaaagtgatctgcca 297 ||||||| |||||||||||| Sbjct: 1058 gctgccagagtgatctgcca 1077 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 412 atgcccacctggtttgagacctgggacaggtctgacacctacaccactcttgctgttgtt 471 ||||| |||||||||||||| ||||| | | |||||||||| | |||||| | ||||| Sbjct: 1186 atgccaacctggtttgagacatgggaaacggctgacacctatgctgctcttggtattgtt 1245 Query: 472 gccgctgctgcaacggcgttcgccgctttcagg 504 || ||||||||| ||| ||||| |||||||||| Sbjct: 1246 gcagctgctgcatcggtgttcgtcgctttcagg 1278
>dbj|AK071759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C03, full insert sequence Length = 1611 Score = 129 bits (65), Expect = 1e-26 Identities = 117/135 (86%) Strand = Plus / Plus Query: 1 cattggtatggntatgttgctcctgntgatgtgcctgtgttactgcgtcaacatattgga 60 ||||||||||| |||||| |||||| |||||||||||| || || | | ||||||||||| Sbjct: 795 cattggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattgga 854 Query: 61 caaggagagattgtgggccatctgtggaggggccagttgggtttgtctgaagagcagcag 120 ||||||||||| |||| |||||| |||||||| ||| |||||||||||||||| ||||| Sbjct: 855 caaggagagatcgtggaccatctatggaggggtcagatgggtttgtctgaagaagagcag 914 Query: 121 aaaaaagctctggag 135 | ||||| |||||| Sbjct: 915 aggaaagccctggag 929 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 218 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 277 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1000 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1056 Query: 278 gctgccaaagtgatctgcca 297 ||||||| |||||||||||| Sbjct: 1057 gctgccagagtgatctgcca 1076 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 412 atgcccacctggtttgagacctgggacaggtctgacacctacaccactcttgctgttgtt 471 ||||| |||||||||||||| ||||| | | |||||||||| | |||||| | ||||| Sbjct: 1185 atgccaacctggtttgagacatgggaaacggctgacacctatgctgctcttggtattgtt 1244 Query: 472 gccgctgctgcaacggcgttcgccgctttcagg 504 || ||||||||| ||| ||||| |||||||||| Sbjct: 1245 gcagctgctgcatcggtgttcgtcgctttcagg 1277
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 3e-14 Identities = 75/86 (87%) Strand = Plus / Minus Query: 5 ggtatggntatgttgctcctgntgatgtgcctgtgttactgcgtcaacatattggacaag 64 ||||||| |||||| |||||| |||||||||||| || || | | ||||||||||||||| Sbjct: 30159995 ggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattggacaag 30159936 Query: 65 gagagattgtgggccatctgtggagg 90 ||||||| |||| |||||| |||||| Sbjct: 30159935 gagagatcgtggaccatctatggagg 30159910 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 218 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 277 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 30158857 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 30158801 Query: 278 gctgccaaagtgatctgcca 297 ||||||| |||||||||||| Sbjct: 30158800 gctgccagagtgatctgcca 30158781 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 412 atgcccacctggtttgagacctgggacaggtctgacacctacaccactcttgctgttgtt 471 ||||| |||||||||||||| ||||| | | |||||||||| | |||||| | ||||| Sbjct: 30158672 atgccaacctggtttgagacatgggaaacggctgacacctatgctgctcttggtattgtt 30158613 Query: 472 gccgctgctgcaacggcgttcgccgctttcagg 504 || ||||||||| ||| ||||| |||||||||| Sbjct: 30158612 gcagctgctgcatcggtgttcgtcgctttcagg 30158580 Score = 40.1 bits (20), Expect = 6.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 88 aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 135 ||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 30158975 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 30158928
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 87.7 bits (44), Expect = 3e-14 Identities = 75/86 (87%) Strand = Plus / Minus Query: 5 ggtatggntatgttgctcctgntgatgtgcctgtgttactgcgtcaacatattggacaag 64 ||||||| |||||| |||||| |||||||||||| || || | | ||||||||||||||| Sbjct: 139592 ggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattggacaag 139533 Query: 65 gagagattgtgggccatctgtggagg 90 ||||||| |||| |||||| |||||| Sbjct: 139532 gagagatcgtggaccatctatggagg 139507 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 218 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 277 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 138454 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 138398 Query: 278 gctgccaaagtgatctgcca 297 ||||||| |||||||||||| Sbjct: 138397 gctgccagagtgatctgcca 138378 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 412 atgcccacctggtttgagacctgggacaggtctgacacctacaccactcttgctgttgtt 471 ||||| |||||||||||||| ||||| | | |||||||||| | |||||| | ||||| Sbjct: 138269 atgccaacctggtttgagacatgggaaacggctgacacctatgctgctcttggtattgtt 138210 Query: 472 gccgctgctgcaacggcgttcgccgctttcagg 504 || ||||||||| ||| ||||| |||||||||| Sbjct: 138209 gcagctgctgcatcggtgttcgtcgctttcagg 138177 Score = 40.1 bits (20), Expect = 6.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 88 aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 135 ||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 138572 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 138525
>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_G07 Length = 93240 Score = 87.7 bits (44), Expect = 3e-14 Identities = 75/86 (87%) Strand = Plus / Minus Query: 5 ggtatggntatgttgctcctgntgatgtgcctgtgttactgcgtcaacatattggacaag 64 ||||||| |||||| |||||| |||||||||||| || || | | ||||||||||||||| Sbjct: 32699 ggtatggttatgtttctcctgatgatgtgcctgtcttgctacataaacatattggacaag 32640 Query: 65 gagagattgtgggccatctgtggagg 90 ||||||| |||| |||||| |||||| Sbjct: 32639 gagagatcgtggaccatctatggagg 32614 Score = 67.9 bits (34), Expect = 3e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 218 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 277 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 31561 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 31505 Query: 278 gctgccaaagtgatctgcca 297 ||||||| |||||||||||| Sbjct: 31504 gctgccagagtgatctgcca 31485 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 412 atgcccacctggtttgagacctgggacaggtctgacacctacaccactcttgctgttgtt 471 ||||| |||||||||||||| ||||| | | |||||||||| | |||||| | ||||| Sbjct: 31376 atgccaacctggtttgagacatgggaaacggctgacacctatgctgctcttggtattgtt 31317 Query: 472 gccgctgctgcaacggcgttcgccgctttcagg 504 || ||||||||| ||| ||||| |||||||||| Sbjct: 31316 gcagctgctgcatcggtgttcgtcgctttcagg 31284 Score = 40.1 bits (20), Expect = 6.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 88 aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 135 ||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 31679 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 31632
>gb|AY111756.1| Zea mays CL26659_-2 mRNA sequence Length = 669 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 400 aagatttgccggatgcccacctggtttgagacctgggacaggtctgacacctacaccact 459 |||| ||||| ||||||||||||||||||||||||||| || |||||||||| | || Sbjct: 443 aagacttgcccgatgcccacctggtttgagacctgggagagagctgacacctatgctgct 384 Query: 460 cttgctgtt 468 ||||||||| Sbjct: 383 cttgctgtt 375
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 acggtgctgctgcttgcaaccc 230 |||||||||||||||||||||| Sbjct: 20715803 acggtgctgctgcttgcaaccc 20715824
>gb|AY190962.1| Drosophila willistoni clone DWIF01_6_P12 (D1474) genomic sequence Length = 41651 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 461 ttgctgttgttgccgctgctgc 482 |||||||||||||||||||||| Sbjct: 38282 ttgctgttgttgccgctgctgc 38303
>dbj|AP004617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C08 Length = 152460 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 acggtgctgctgcttgcaaccc 230 |||||||||||||||||||||| Sbjct: 88256 acggtgctgctgcttgcaaccc 88277
>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete sequence Length = 227918 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 gccaaagaatcccctgaagcaa 199 |||||||||||||||||||||| Sbjct: 65835 gccaaagaatcccctgaagcaa 65856
>gb|AC012650.9| Drosophila melanogaster clone BACN24N09, complete sequence Length = 74083 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 461 ttgctgttgttgccgctgctg 481 ||||||||||||||||||||| Sbjct: 24047 ttgctgttgttgccgctgctg 24027
>gb|AC092189.3| Drosophila melanogaster clone BACR34M11, complete sequence Length = 168540 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgc 482 ||||||||||||||||||||| Sbjct: 115514 tgctgttgttgccgctgctgc 115494
>gb|AF503449.1| Danio rerio TATA-binding protein (TBP) mRNA, complete cds Length = 1743 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgc 482 ||||||||||||||||||||| Sbjct: 316 tgctgttgttgccgctgctgc 296
>gb|AY168633.1| Danio rerio TATA-binding protein (TBP) mRNA, complete cds Length = 1725 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgc 482 ||||||||||||||||||||| Sbjct: 314 tgctgttgttgccgctgctgc 294
>gb|AC115986.3| Homo sapiens chromosome 18, clone RP11-112C14, complete sequence Length = 179590 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 tctgccagaaacaaaacagga 311 ||||||||||||||||||||| Sbjct: 154321 tctgccagaaacaaaacagga 154341
>gb|AC022743.7| Homo sapiens chromosome 18, clone RP11-789C7, complete sequence Length = 182466 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 tctgccagaaacaaaacagga 311 ||||||||||||||||||||| Sbjct: 120907 tctgccagaaacaaaacagga 120887
>ref|NM_134557.1| Drosophila melanogaster CG1379-RA (CG1379), mRNA Length = 1107 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 461 ttgctgttgttgccgctgctg 481 ||||||||||||||||||||| Sbjct: 524 ttgctgttgttgccgctgctg 504
>gb|AC161887.5| Mus musculus 6 BAC RP23-75P5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 227751 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 agctgagcagaagcacaggag 344 ||||||||||||||||||||| Sbjct: 26835 agctgagcagaagcacaggag 26855
>gb|AC008310.5|AC008310 Drosophila melanogaster, chromosome 3R, region 100C-100D, BAC clone BACR16C04, complete sequence Length = 159528 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 465 tgttgttgccgctgctgcaac 485 ||||||||||||||||||||| Sbjct: 73231 tgttgttgccgctgctgcaac 73211
>gb|AC007469.7|AC007469 Drosophila melanogaster, chromosome 3R, region 100D1-100F2, BAC clone BACR48C22, complete sequence Length = 181446 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 465 tgttgttgccgctgctgcaac 485 ||||||||||||||||||||| Sbjct: 22866 tgttgttgccgctgctgcaac 22846
>gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, complete sequence Length = 128950 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 ccctgaagcaaatggaaccaa 209 ||||||||||||||||||||| Sbjct: 86353 ccctgaagcaaatggaaccaa 86333
>gb|AE014133.1| Streptococcus mutans UA159, complete genome Length = 2030921 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ctgtgttactgcgtcaacata 55 ||||||||||||||||||||| Sbjct: 1592834 ctgtgttactgcgtcaacata 1592854
>gb|AC158685.4| Mus musculus 6 BAC RP23-284D11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 191856 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 agctgagcagaagcacaggag 344 ||||||||||||||||||||| Sbjct: 95099 agctgagcagaagcacaggag 95119
>gb|AE003779.2| Drosophila melanogaster chromosome 3R, section 117 of 118 of the complete sequence Length = 232050 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 465 tgttgttgccgctgctgcaac 485 ||||||||||||||||||||| Sbjct: 62138 tgttgttgccgctgctgcaac 62118
>gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 of 83 of the complete sequence Length = 303641 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgc 482 ||||||||||||||||||||| Sbjct: 299223 tgctgttgttgccgctgctgc 299203
>gb|AE003571.4| Drosophila melanogaster chromosome X, section 68 of 74 of the complete sequence Length = 302538 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 461 ttgctgttgttgccgctgctg 481 ||||||||||||||||||||| Sbjct: 285221 ttgctgttgttgccgctgctg 285241
>dbj|AK116673.1| Ciona intestinalis cDNA, clone:cicl031p12, full insert sequence Length = 1480 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 461 ttgctgttgttgccgctgctg 481 ||||||||||||||||||||| Sbjct: 212 ttgctgttgttgccgctgctg 192
>gb|AC003055.1|AC003055 Drosophila melanogaster (P1 DS06332 (D91)) DNA sequence, complete sequence Length = 73076 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 tgctgttgttgccgctgctgc 482 ||||||||||||||||||||| Sbjct: 40241 tgctgttgttgccgctgctgc 40261
>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007H22, complete sequence Length = 160938 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 tcttgctgttgttgccgctgctgc 482 ||||| |||||||||||||||||| Sbjct: 43844 tcttgttgttgttgccgctgctgc 43867
>gb|AC127306.3| Mus musculus BAC clone RP23-290H17 from chromosome 7, complete sequence Length = 204478 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 ttccagctgagcagaagcac 339 |||||||||||||||||||| Sbjct: 92483 ttccagctgagcagaagcac 92502
>gb|AC110262.12| Mus musculus chromosome 17, clone RP23-291L10, complete sequence Length = 210850 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 aaacaaaacaggacaagagc 318 |||||||||||||||||||| Sbjct: 13631 aaacaaaacaggacaagagc 13612
>emb|CR790381.6| Zebrafish DNA sequence from clone DKEY-202K24 in linkage group 3, complete sequence Length = 93389 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 aaacaaaacaggacaagagc 318 |||||||||||||||||||| Sbjct: 27390 aaacaaaacaggacaagagc 27409
>gb|AC122821.4| Mus musculus BAC clone RP23-201I4 from chromosome 17, complete sequence Length = 220013 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 aaacaaaacaggacaagagc 318 |||||||||||||||||||| Sbjct: 64989 aaacaaaacaggacaagagc 65008
>gb|AC146329.19| Medicago truncatula clone mth2-5i21, complete sequence Length = 142834 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 aacctgctgccaaagtgatc 292 |||||||||||||||||||| Sbjct: 59184 aacctgctgccaaagtgatc 59203
>emb|AL662874.9| Human DNA sequence from clone RP13-24G8 on chromosome X Contains a novel gene, a delta sleep inducing peptide, immunoreactor (DSIPI) pseudogene, the PABPC5 gene for poly(A) binding protein, cytoplasmic 5 and a CpG island, complete sequence Length = 160906 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 acaaggagagattgtgggcc 79 |||||||||||||||||||| Sbjct: 96053 acaaggagagattgtgggcc 96034
>emb|AL590287.8| Human DNA sequence from clone RP11-378C6 on chromosome 13, complete sequence Length = 38013 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 gtgatctgccagaaacaaaa 306 |||||||||||||||||||| Sbjct: 2022 gtgatctgccagaaacaaaa 2003
>gb|AC102542.8| Mus musculus, clone RP23-110O23, complete sequence Length = 270695 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 gagacctgggacaggtctgacacc 450 ||||||||||| |||||||||||| Sbjct: 242740 gagacctgggaaaggtctgacacc 242717
>ref|XM_968841.1| PREDICTED: Tribolium castaneum similar to High mobility group protein DSP1 (Dorsal switch protein 1) (LOC662763), mRNA Length = 2682 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 459 tcttgctgttgttgccgctgctgc 482 ||||||||||||||| |||||||| Sbjct: 1670 tcttgctgttgttgctgctgctgc 1647
>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7 Length = 349213 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 aactgaggaagaatcaagcgccaa 182 ||||||||||||||||| |||||| Sbjct: 103289 aactgaggaagaatcaatcgccaa 103312
>emb|BX571953.9| Zebrafish DNA sequence from clone RP71-69B23 in linkage group 13, complete sequence Length = 144282 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gtctgaagagcagcagaaaa 124 |||||||||||||||||||| Sbjct: 94160 gtctgaagagcagcagaaaa 94179
>gb|AC010017.5| Drosophila melanogaster 3L BAC RP98-2C22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 182960 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgcaac 485 |||||||||||| ||||||||||| Sbjct: 169133 tgctgttgttgctgctgctgcaac 169110
>gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163098 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgcaac 485 |||||||||||| ||||||||||| Sbjct: 52578 tgctgttgttgctgctgctgcaac 52555
>ref|NM_168237.1| Drosophila melanogaster PAR-domain protein 1 CG17888-RD, transcript variant D (Pdp1), mRNA Length = 4704 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctg 481 |||||||||||||||||||| Sbjct: 941 tgctgttgttgccgctgctg 922
>ref|NM_141028.1| Drosophila melanogaster CG12977-RA (CG12977), mRNA Length = 930 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgcaac 485 |||||||||||| ||||||||||| Sbjct: 395 tgctgttgttgctgctgctgcaac 372
>ref|NM_134961.1| Drosophila melanogaster CG10019-RA (CG10019), mRNA Length = 3396 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgcaac 485 |||||||||||| ||||||||||| Sbjct: 2744 tgctgttgttgctgctgctgcaac 2721
>dbj|AK137850.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130027I17 product:unclassifiable, full insert sequence Length = 2351 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 aaacaaaacaggacaagagc 318 |||||||||||||||||||| Sbjct: 2202 aaacaaaacaggacaagagc 2183
>dbj|AK137778.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130006I09 product:unclassifiable, full insert sequence Length = 2352 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 aaacaaaacaggacaagagc 318 |||||||||||||||||||| Sbjct: 2203 aaacaaaacaggacaagagc 2184
>gb|AC106821.2| Homo sapiens chromosome 5 clone RP11-730N24, complete sequence Length = 151355 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gagattgtgggccatctgtg 86 |||||||||||||||||||| Sbjct: 85902 gagattgtgggccatctgtg 85883
>gb|AC091225.2| Drosophila melanogaster 3L BAC RP98-34B24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174774 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 tgctgttgttgccgctgctg 481 |||||||||||||||||||| Sbjct: 73672 tgctgttgttgccgctgctg 73691
>gb|AY070526.1| Drosophila melanogaster GH27708 full length cDNA Length = 3095 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctg 481 |||||||||||||||||||| Sbjct: 941 tgctgttgttgccgctgctg 922
>gb|AC092240.1|AC092240 Drosophila melanogaster, chromosome 2L, region 24E-24F, BAC clone BACR06H02, complete sequence Length = 187707 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgcaac 485 |||||||||||| ||||||||||| Sbjct: 44771 tgctgttgttgctgctgctgcaac 44748
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 459 tcttgctgttgttgccgctgctgc 482 ||||| |||||||||||||||||| Sbjct: 6843007 tcttgttgttgttgccgctgctgc 6842984
>gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, region 92A-92A, BAC clone BACR12P10, complete sequence Length = 186686 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ctgaagagcagcagaaaaaa 126 |||||||||||||||||||| Sbjct: 94951 ctgaagagcagcagaaaaaa 94970
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 gctgttgttgccgctgctgc 482 |||||||||||||||||||| Sbjct: 1980851 gctgttgttgccgctgctgc 1980832
>gb|AC154682.2| Mus musculus BAC clone RP24-315N18 from chromosome 14, complete sequence Length = 171851 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 427 gagacctgggacaggtctgacacc 450 ||||||||||| |||||||||||| Sbjct: 123784 gagacctgggaaaggtctgacacc 123807
>gb|AC010142.4|AC010142 Homo sapiens BAC clone RP11-240N18 from Y, complete sequence Length = 136462 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 acaaggagagattgtgggcc 79 |||||||||||||||||||| Sbjct: 72341 acaaggagagattgtgggcc 72322
>gb|BT024351.1| Drosophila melanogaster IP09244 full insert cDNA Length = 1307 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgcaac 485 |||||||||||| ||||||||||| Sbjct: 551 tgctgttgttgctgctgctgcaac 528
>gb|AC010183.6| Homo sapiens 12 BAC RP11-100F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175504 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gcaagaagggatgcatgaag 402 |||||||||||||||||||| Sbjct: 82841 gcaagaagggatgcatgaag 82860
>gb|AC151053.2| Mus musculus BAC clone RP23-402A4 from 7, complete sequence Length = 201862 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gccatctgtggaggggccag 96 |||||||||||||||||||| Sbjct: 47526 gccatctgtggaggggccag 47507
>gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64 of 118 of the complete sequence Length = 247876 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ctgaagagcagcagaaaaaa 126 |||||||||||||||||||| Sbjct: 153110 ctgaagagcagcagaaaaaa 153129
>gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74 of 83 of the complete sequence Length = 313157 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 tgctgttgttgccgctgctgcaac 485 |||||||||||| ||||||||||| Sbjct: 232799 tgctgttgttgctgctgctgcaac 232822
>gb|AE003578.3| Drosophila melanogaster chromosome 2L, section 13 of 83 of the complete sequence Length = 295211 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgcaac 485 |||||||||||| ||||||||||| Sbjct: 14521 tgctgttgttgctgctgctgcaac 14498
>gb|AE003557.4| Drosophila melanogaster chromosome 3L, section 28 of 83 of the complete sequence Length = 287988 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 tgctgttgttgccgctgctg 481 |||||||||||||||||||| Sbjct: 67824 tgctgttgttgccgctgctg 67843
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 459 tcttgctgttgttgccgctgctgc 482 ||||| |||||||||||||||||| Sbjct: 6909474 tcttgttgttgttgccgctgctgc 6909451
>gb|AC005149.1|AC005149 Drosophila melanogaster DNA sequence (P1s DS03364 (D237) and DS02911 (D145)), complete sequence Length = 98942 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 tgctgttgttgccgctgctgcaac 485 |||||||||||| ||||||||||| Sbjct: 55497 tgctgttgttgctgctgctgcaac 55474 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,088,448 Number of Sequences: 3902068 Number of extensions: 5088448 Number of successful extensions: 96661 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96384 Number of HSP's gapped (non-prelim): 263 length of query: 506 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 484 effective length of database: 17,147,199,772 effective search space: 8299244689648 effective search space used: 8299244689648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)