ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal12h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY104672.1| Zea mays PCO101322 mRNA sequence 54 3e-04
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
3dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
4emb|AL356111.13| Human DNA sequence from clone RP11-501G6 on chr... 42 1.2
5gb|AC134474.4| Mus musculus BAC clone RP23-234N16 from chromosom... 40 4.7
6gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 4.7
7ref|XM_447591.1| Candida glabrata CBS138 hypothetical protein (C... 40 4.7
8emb|CR855371.13| Chicken DNA sequence from clone WAG-45A21, comp... 40 4.7
9emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp... 40 4.7
10gb|DQ445138.1| Beta vulgaris chromosome 9 clone BAC132 genomic s... 40 4.7
11gb|AC002308.1| Homo sapiens Chromosome 22q11.2 BAC Clone 1000e4 ... 40 4.7
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
13gb|AC087549.2|AC087549 Oryza sativa (japonica cultivar-group) ch... 40 4.7
14gb|AC099636.8| Mus musculus chromosome 19, clone RP24-149H13, co... 40 4.7
15gb|AC124632.11| Mus musculus chromosome 19, clone RP23-445I14, c... 40 4.7
16gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
17ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@)... 40 4.7
18dbj|D87015.2| Homo sapiens immunoglobulin lambda gene locus DNA,... 40 4.7
19dbj|D87007.1| Homo sapiens immunoglobulin lambda gene locus DNA,... 40 4.7

>gb|AY104672.1| Zea mays PCO101322 mRNA sequence
          Length = 1062

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 250 gtggtttatgtccaagaatgcaattgtatctggcttagaacttctaggcatcaag 304
           ||||||||| |||||| ||||||||||||||||| | |  |||||||| ||||||
Sbjct: 703 gtggtttatatccaaggatgcaattgtatctggccttggtcttctaggtatcaag 757



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 257      atgtccaagaatgcaattgtatct 280
                ||||||||||||||||||||||||
Sbjct: 23025148 atgtccaagaatgcaattgtatct 23025125



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>dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0415C01
          Length = 138701

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 257   atgtccaagaatgcaattgtatct 280
             ||||||||||||||||||||||||
Sbjct: 95554 atgtccaagaatgcaattgtatct 95531



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>emb|AL356111.13| Human DNA sequence from clone RP11-501G6 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 150955

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   agattgatgaatattcaaatt 133
             |||||||||||||||||||||
Sbjct: 94975 agattgatgaatattcaaatt 94995



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>gb|AC134474.4| Mus musculus BAC clone RP23-234N16 from chromosome 6, complete sequence
          Length = 171491

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 36     ttttatgtggtcttgatagatcaa 59
              ||||||||| ||||||||||||||
Sbjct: 108243 ttttatgtgctcttgatagatcaa 108220



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 226     gcttgccatcgatcaacagg 245
               ||||||||||||||||||||
Sbjct: 5232417 gcttgccatcgatcaacagg 5232398



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>ref|XM_447591.1| Candida glabrata CBS138 hypothetical protein (CAGL0I07865g) partial
            mRNA
          Length = 2925

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   ccattttgatgtccttggtg 86
            ||||||||||||||||||||
Sbjct: 1340 ccattttgatgtccttggtg 1359



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>emb|CR855371.13| Chicken DNA sequence from clone WAG-45A21, complete sequence
          Length = 104062

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 151   tgcctggcttggtgaaggagcaga 174
             |||||||||| |||||||||||||
Sbjct: 76404 tgcctggctttgtgaaggagcaga 76381



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>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     ccattttgatgtccttggtg 86
              ||||||||||||||||||||
Sbjct: 759796 ccattttgatgtccttggtg 759815



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>gb|DQ445138.1| Beta vulgaris chromosome 9 clone BAC132 genomic sequence
          Length = 32673

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   gaatattcaaattggggagc 140
             ||||||||||||||||||||
Sbjct: 27560 gaatattcaaattggggagc 27579



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>gb|AC002308.1| Homo sapiens Chromosome 22q11.2 BAC Clone 1000e4 In IGLC Region, complete
              sequence
          Length = 151111

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      gggcctttatgcaaatctgc 26
              ||||||||||||||||||||
Sbjct: 134002 gggcctttatgcaaatctgc 133983



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 257      atgtccaagaatgcaattgtatct 280
                ||||||||||||||||| ||||||
Sbjct: 16070113 atgtccaagaatgcaatggtatct 16070136



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>gb|AC087549.2|AC087549 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0039C14,
             complete sequence
          Length = 135098

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 257   atgtccaagaatgcaattgtatct 280
             ||||||||||||||||| ||||||
Sbjct: 85218 atgtccaagaatgcaatggtatct 85241



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>gb|AC099636.8| Mus musculus chromosome 19, clone RP24-149H13, complete sequence
          Length = 141121

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tgggcctttatgcaaatctg 25
             ||||||||||||||||||||
Sbjct: 55330 tgggcctttatgcaaatctg 55349



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>gb|AC124632.11| Mus musculus chromosome 19, clone RP23-445I14, complete sequence
          Length = 178671

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     tgggcctttatgcaaatctg 25
             ||||||||||||||||||||
Sbjct: 53039 tgggcctttatgcaaatctg 53020



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 257      atgtccaagaatgcaattgtatct 280
                ||||||||||||||||| ||||||
Sbjct: 16078354 atgtccaagaatgcaatggtatct 16078377



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>ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@) on chromosome 22
          Length = 909203

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      gggcctttatgcaaatctgc 26
              ||||||||||||||||||||
Sbjct: 700999 gggcctttatgcaaatctgc 700980



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>dbj|D87015.2| Homo sapiens immunoglobulin lambda gene locus DNA, clone:68D6
          Length = 36240

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    gggcctttatgcaaatctgc 26
            ||||||||||||||||||||
Sbjct: 4374 gggcctttatgcaaatctgc 4355



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>dbj|D87007.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:48A11
          Length = 37302

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     gggcctttatgcaaatctgc 26
             ||||||||||||||||||||
Sbjct: 34945 gggcctttatgcaaatctgc 34926


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,218,360
Number of Sequences: 3902068
Number of extensions: 3218360
Number of successful extensions: 59703
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59562
Number of HSP's gapped (non-prelim): 141
length of query: 353
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 331
effective length of database: 17,147,199,772
effective search space: 5675723124532
effective search space used: 5675723124532
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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