ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal12g13 |
|---|---|
| Clone Library Name | barley_pub |
>BAF1_KLUMA (P33293) Transcription factor BAF1 (ARS-binding factor 1) (Protein| ABF1) (Bidirectionally acting factor) Length = 496 Score = 35.0 bits (79), Expect = 0.045 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = +1 Query: 94 ITMDILVSAIAGDLVSRLASFVISKYFRQQPGIDMILQRLQRVVQRMDTVVEEADGRRIT 273 + D ++ ++ D + +A F +++Y + ID+I QR MD + RR+T Sbjct: 202 LKFDAILESLCNDEDNTVAKFRVAQYVEESGIIDIIKQRYGLTDAEMDKKMLSNIARRVT 261 Query: 274 NQGMLRQLKTLRQGMY---TGHYILDALRFQ 357 LK ++G+Y GH I A + Q Sbjct: 262 TDKARFVLKRKKEGVYMLPNGHQISGADQHQ 292
>SYFB_SYNJA (Q2JXF6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 825 Score = 33.5 bits (75), Expect = 0.13 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = -1 Query: 360 SLESQGVKNVVACVHSLPQCLELTEHPLVGDAPPISLLDDGVHSLNDS 217 SL G++ +H P L+L HPL DA P+ LDD V L + Sbjct: 122 SLAELGLERASEGIHEFPPDLDLKAHPLGSDARPLLGLDDVVLDLTST 169
>TAOK3_XENLA (Q6DD27) Serine/threonine-protein kinase TAO3 (EC 2.7.11.1)| (Thousand and one amino acid protein 3) Length = 896 Score = 31.6 bits (70), Expect = 0.50 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Frame = -1 Query: 324 CVHSLPQ----CLELTEHPLVGDAPPISLLDDGVHSLNDSLQPLENHVDARLLPEVLADH 157 C+ LPQ LEL H V P +L D + D+++ L+N + R + ++L Sbjct: 257 CLQKLPQERPASLELLRHDFVWRERPARVLIDLIQRTKDAVRELDN-LQYRKMKKILFQE 315 Query: 156 ERCQPADEISCDCRDED 106 R P +E D D + Sbjct: 316 SRNGPLNESQEDDEDSE 332
>SYFB_SYNJB (Q2JHU3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 825 Score = 31.2 bits (69), Expect = 0.65 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -1 Query: 360 SLESQGVKNVVACVHSLPQCLELTEHPLVGDAPPISLLDDGVHSLNDS 217 SL G++ +H P L+L HPL D P+ LDD V L + Sbjct: 122 SLAELGLEKSSEGIHEFPPDLDLEAHPLGSDVRPLLGLDDVVLDLTST 169
>BAF1_KLULA (P26375) Transcription factor BAF1 (ARS-binding factor 1) (Protein| ABF1) (Bidirectionally acting factor) Length = 494 Score = 31.2 bits (69), Expect = 0.65 Identities = 18/76 (23%), Positives = 35/76 (46%) Frame = +1 Query: 94 ITMDILVSAIAGDLVSRLASFVISKYFRQQPGIDMILQRLQRVVQRMDTVVEEADGRRIT 273 + D ++ ++ D + +A F +++Y + +D+I QR MD + RR+T Sbjct: 190 LKFDAILESLCNDDDNTVAKFRVAQYVEESGILDIIKQRYGLTEAEMDKKMLSNIARRVT 249 Query: 274 NQGMLRQLKTLRQGMY 321 LK + G+Y Sbjct: 250 TYKARFVLKRKKDGVY 265
>Y2673_VIBPA (Q87LD9) UPF0042 protein VP2673| Length = 287 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -1 Query: 270 DAPPISLLDDGVHSLNDSLQPLENHVDARLLPEVLAD 160 D P++LLD VHS+ DS Q + +D R +P+ L + Sbjct: 30 DNLPVNLLDAFVHSIADSKQNVAVSIDIRNIPKKLKE 66
>PERI_RAT (P21807) Peripherin| Length = 468 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 175 RQQPGIDMILQRLQRVVQRMDTVVEEADGRRITNQGMLRQLKTLRQ--GMYTGHYILDAL 348 R + Q + +++ ++ E DG R TN+ +LRQL+ L + + G Y A Sbjct: 297 RNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAA 356 Query: 349 RFQ 357 R + Sbjct: 357 RLE 359
>SVP2_CAVPO (P16531) Seminal vesicle protein SVP-2 precursor (Fragment)| Length = 132 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = +3 Query: 120 NRRRSRQQVGIVRDQQVLPAAAWHRHDSPEAAASRSENGHRRRGG*WAAHHQPGDAPSAQ 299 N+ R+ G R Q + + WH+ + E+ +SR ++ +RR W D P+ + Sbjct: 10 NQASGRRLRGSARAQDPVVSRVWHKEEVEESESSRGQDFDKRRF--WEK-----DDPTGE 62 Query: 300 DTEARNVH 323 R+ H Sbjct: 63 HVSVRHEH 70
>PERI_MOUSE (P15331) Peripherin| Length = 475 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 175 RQQPGIDMILQRLQRVVQRMDTVVEEADGRRITNQGMLRQLKTLRQ--GMYTGHYILDAL 348 R + Q + +++ ++ E DG R TN+ +LRQL+ L + + G Y A Sbjct: 304 RNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAA 363 Query: 349 RFQ 357 R + Sbjct: 364 RLE 366
>PERI_HUMAN (P41219) Peripherin| Length = 471 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 175 RQQPGIDMILQRLQRVVQRMDTVVEEADGRRITNQGMLRQLKTLRQ--GMYTGHYILDAL 348 R + Q + +++ ++ E DG R TN+ +LRQL+ L + + G Y A Sbjct: 300 RNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAA 359 Query: 349 RFQ 357 R + Sbjct: 360 RLE 362
>RPOB_AQUPY (Q9X6Y1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1469 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = -1 Query: 357 LESQGVKNVVACVHSLPQCLELTEHPLVGDAPPISLLDD 241 L G + A VH++P+ L+ T+ L+ + PP++L +D Sbjct: 424 LSRVGRVKINAKVHNIPKVLKPTDIDLLDNLPPLALAED 462
>PSF2_ARATH (Q9C7A8) Probable DNA replication complex GINS protein PSF2| Length = 210 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +3 Query: 132 SRQQVGIVRDQQVLPAAAWHRHDSPEAAASRSENGHRRR 248 S +V IVR + A+++HD PEA R R++ Sbjct: 158 SAMEVNIVRPFVIRALEAFYKHDKPEADVDRDTRSSRQQ 196
>ACSL6_RAT (P33124) Long-chain-fatty-acid--CoA ligase 6 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 6) (LACS 6) (Long-chain-fatty-acid--CoA ligase, brain isozyme) Length = 697 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +2 Query: 239 PSSRRLMGGASPTRGCSVSSRH*GKECTQATTFLTP*D 352 P+S ++G GC V + ECT TF TP D Sbjct: 437 PASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
>ACSL6_MOUSE (Q91WC3) Long-chain-fatty-acid--CoA ligase 6 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 6) (LACS 6) Length = 697 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +2 Query: 239 PSSRRLMGGASPTRGCSVSSRH*GKECTQATTFLTP*D 352 P+S ++G GC V + ECT TF TP D Sbjct: 437 PASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
>ACSL6_HUMAN (Q9UKU0) Long-chain-fatty-acid--CoA ligase 6 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 6) (LACS 6) Length = 697 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +2 Query: 239 PSSRRLMGGASPTRGCSVSSRH*GKECTQATTFLTP*D 352 P+S ++G GC V + ECT TF TP D Sbjct: 437 PASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 25.0 bits (53), Expect(2) = 6.9 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +3 Query: 177 AAAWHRHDSPEAAASRSENGHRRRG 251 AAA H D +AS S +GHR +G Sbjct: 222 AAAHHGSDLSHHSASESTSGHRGQG 246 Score = 21.2 bits (43), Expect(2) = 6.9 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 16 HPASTRCCLPRHLPSTTWCSSRGGSHITMDIL 111 +PA+ R LP + S R G HI+ DIL Sbjct: 176 YPAALRNALPGLFDAKVPSSQRSGFHIS-DIL 206
>Y014_SYNY3 (Q57208) Hypothetical protein slr0014| Length = 234 Score = 27.7 bits (60), Expect = 7.2 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 5/96 (5%) Frame = +1 Query: 58 STTWCSSRGGSHITMDILVSAIAGD---LVSRLASFVISKYFRQQP--GIDMILQRLQRV 222 +T WCS+ G+ + A+ G LV+ +A +S + QP ++ L + Sbjct: 92 ATLWCSAAVGTLCGQGLFSEAVLGSMMVLVANIALRPLSTFINHQPMHSTELECHYLCHL 151 Query: 223 VQRMDTVVEEADGRRITNQGMLRQLKTLRQGMYTGH 330 V R D EEA+ RRI L ++K ++ H Sbjct: 152 VCRGD---EEANVRRILLDS-LAEIKNIKLRSLRSH 183
>INA1_CAEEL (Q03600) Integrin alpha ina-1 precursor| Length = 1139 Score = 27.7 bits (60), Expect = 7.2 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 17/76 (22%) Frame = +1 Query: 37 CLPRHLPSTTWCSSRGG------SHITMDILVSAIAGDLV-----------SRLASFVIS 165 C ++LP+T + GG + IT D +V+ + G + + + V+ Sbjct: 175 CAQKNLPTTDRHNEYGGCMEGFSAAITQDTIVTGLIGAVKWTGGVFAKKSSANIFDSVVE 234 Query: 166 KYFRQQPGIDMILQRL 213 KY QP DMI RL Sbjct: 235 KYTMNQPNGDMIRTRL 250
>RRPL_DUGBV (Q66431) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)| Length = 4036 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = -1 Query: 360 SLESQGVKNVVACVHSLPQCLELTEHPLVGDAPPISLLDDGVHSLNDSLQPLENHVDARL 181 +L S G+ + + +L C + P S+ + D L PL+N + AR+ Sbjct: 3805 ALNSSGINDREIAIVALFTCFYYQSDSVKRQGPVCSI-SSFCSLIGDDLLPLDNRLQARV 3863 Query: 180 LPE 172 LPE Sbjct: 3864 LPE 3866
>XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-)| Length = 915 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = -3 Query: 334 CSGLCTFLASVS*ADGASPGW*C 266 CSGLCT G PGW C Sbjct: 448 CSGLCTIPEGKQCPSGEGPGWVC 470
>BBS2_BRARE (Q98SP7) Bardet-Biedl syndrome 2 protein homolog| Length = 715 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 10/71 (14%) Frame = +1 Query: 55 PSTTWCSSRGGSHITMDILVSA----------IAGDLVSRLASFVISKYFRQQPGIDMIL 204 P T+ + RGG + + + S +AGDLV LASF+ + + + + Sbjct: 525 PDVTFSALRGGGLLRISLQTSGEITLRTDDIDLAGDLVQSLASFLAIEDLQAESDFPVYF 584 Query: 205 QRLQRVVQRMD 237 + L+ + +D Sbjct: 585 KELRATLTEVD 595
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -2 Query: 176 RKYLLITNDANLLTRSPAIAETRISIVMCEPPRLEHQVVDGRW 48 + +L TND N S I R + +C P H +VDGR+ Sbjct: 43 KNFLNTTNDPN----SGKIRAERYASALCGPEGYPHLIVDGRF 81
>PERI_XENLA (P48676) Peripherin (Neuronal intermediate filament IF3)| Length = 456 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = +1 Query: 175 RQQPGIDMILQRLQRVVQRMDTVVEEADGRRITNQGMLRQLKTLRQ--GMYTGHY 333 R + Q + +++ ++ E DG + TN+ +LRQ+K + + GM +Y Sbjct: 290 RNSEALRQAKQDMNESRRQIQSLTCEVDGLKGTNEALLRQMKNMEEQFGMEAANY 344
>Y387_HAEIN (P44680) Probable ATP-dependent helicase HI0387 (EC 3.6.1.-)| Length = 640 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Frame = +1 Query: 13 HHPASTRCCLPRHLPSTTWCSSRGGSHITMDILVSAIAGDLVSRLASFV----ISKYFRQ 180 ++P + C+PR+LP+T ++ + ++ A G S+ +++YFR+ Sbjct: 434 NYPEQSLLCVPRYLPNTNQMNTLNSLGEILLPVIEANKGRCFVLCTSYSMMRGLAEYFRE 493 Query: 181 QPGIDMILQ 207 + + ++LQ Sbjct: 494 KSHLSILLQ 502
>NR4A2_RAT (Q07917) Orphan nuclear receptor NR4A2 (Orphan nuclear receptor| NURR1) (NUR-related factor 1) (Regenerating liver nuclear receptor 1) (RNR-1) (SL-322) (Nuclear orphan receptor HZF-3) Length = 598 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 253 PPRRRCPFSERLAAASGESCRCQAAAGSTC 164 PP R P +E L A G++ CQ TC Sbjct: 251 PPSRGSPSNEGLCAVCGDNAACQHYGVRTC 280
>NR4A2_MOUSE (Q06219) Orphan nuclear receptor NR4A2 (Orphan nuclear receptor| NURR1) (NUR-related factor 1) Length = 598 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 253 PPRRRCPFSERLAAASGESCRCQAAAGSTC 164 PP R P +E L A G++ CQ TC Sbjct: 251 PPSRGSPSNEGLCAVCGDNAACQHYGVRTC 280
>NR4A2_HUMAN (P43354) Orphan nuclear receptor NR4A2 (Orphan nuclear receptor| NURR1) (Immediate-early response protein NOT) (Transcriptionally-inducible nuclear receptor) Length = 598 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -3 Query: 253 PPRRRCPFSERLAAASGESCRCQAAAGSTC 164 PP R P +E L A G++ CQ TC Sbjct: 251 PPSRGSPSNEGLCAVCGDNAACQHYGVRTC 280
>Y2121_SULTO (Q96YQ2) UPF0204 protein ST2121| Length = 237 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/30 (33%), Positives = 21/30 (70%) Frame = +1 Query: 157 VISKYFRQQPGIDMILQRLQRVVQRMDTVV 246 +ISKY+ + ++ILQ + ++++DTV+ Sbjct: 182 IISKYYLAELSNEVILQTVNNTIEKIDTVM 211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,812,449 Number of Sequences: 219361 Number of extensions: 1198121 Number of successful extensions: 3529 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3444 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3529 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
