ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal12g11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009249.1| Triticum aestivum clone wlk1.pk0028.e1:fis, full insert mRNA sequence Length = 2310 Score = 519 bits (262), Expect = e-144 Identities = 363/396 (91%), Gaps = 2/396 (0%) Strand = Plus / Plus Query: 130 gggccggtgaaccctgagcgcgcggcggctgcatcgaccgatcacggggaccactctaca 189 |||||||||||||||||||||||||||||| |||| ||||||||| || ||||| || Sbjct: 7 gggccggtgaaccctgagcgcgcggcggctccatccaccgatcacaggaaccaccgta-- 64 Query: 190 tatccggctaacaagaagaagttccaatagcagagatggttcatcatatatctgacgagg 249 ||||||| |||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct: 65 tatccggataacaaaaatttgttccagtagcagagatggttcatcatatatctgacgagg 124 Query: 250 cagcagatgaacctagcatcaccacacagacaccgtncgctggcccatctcaagcaccac 309 |||||||||||||||||||||||||||||||||| | || ||||||||||||||| | Sbjct: 125 cagcagatgaacctagcatcaccacacagacaccccccaatgacccatctcaagcaccgc 184 Query: 310 tgatgtacaaagtgggttatccccctcggaagaacttggccacagagtttacagaaacgt 369 || ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| | Sbjct: 185 tggtgtacaaagtgggctatccccctccgaagaacttggccacagagtttacagaaacat 244 Query: 370 tgagagagactttcttccacgacaacccgctgcgtgagtacaagggtcaatccggaccga 429 |||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| Sbjct: 245 tgagggagactttcttccacgacaacccgctgcgtcagtataagggccaatccggaccga 304 Query: 430 ggaggttcatgatggggctcgagttcttgtttccaatatttgggtggggtaggaattaca 489 ||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| Sbjct: 305 ggaggttcatgatggggctggagttcttgtttcctatatttgggtggggtagggattaca 364 Query: 490 gtctcaacaagttcaaaggcgatctgatagccggat 525 |||||||||||||||||||||||||||| ||||||| Sbjct: 365 gtctcaacaagttcaaaggcgatctgattgccggat 400
>ref|XM_482317.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1971 Score = 63.9 bits (32), Expect = 5e-07 Identities = 113/140 (80%) Strand = Plus / Plus Query: 339 aagaacttggccacagagtttacagaaacgttgagagagactttcttccacgacaacccg 398 |||||||| || | |||||||| ||| || |||||||||||||||||||| |||||||| Sbjct: 115 aagaactttgcgagagagtttagagacacattgagagagactttcttccatgacaaccca 174 Query: 399 ctgcgtgagtacaagggtcaatccggaccgaggaggttcatgatggggctcgagttcttg 458 | || ||||||||| ||||| ||| || | ||||||||||| ||| ||||| || Sbjct: 175 ttacgccagtacaaggaccaatctggatcggcaaagttcatgatggcgctgcagttcctg 234 Query: 459 tttccaatatttgggtgggg 478 || ||||| |||| |||||| Sbjct: 235 ttcccaatctttgagtgggg 254
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 63.9 bits (32), Expect = 5e-07 Identities = 113/140 (80%) Strand = Plus / Plus Query: 339 aagaacttggccacagagtttacagaaacgttgagagagactttcttccacgacaacccg 398 |||||||| || | |||||||| ||| || |||||||||||||||||||| |||||||| Sbjct: 19422115 aagaactttgcgagagagtttagagacacattgagagagactttcttccatgacaaccca 19422174 Query: 399 ctgcgtgagtacaagggtcaatccggaccgaggaggttcatgatggggctcgagttcttg 458 | || ||||||||| ||||| ||| || | ||||||||||| ||| ||||| || Sbjct: 19422175 ttacgccagtacaaggaccaatctggatcggcaaagttcatgatggcgctgcagttcctg 19422234 Query: 459 tttccaatatttgggtgggg 478 || ||||| |||| |||||| Sbjct: 19422235 ttcccaatctttgagtgggg 19422254 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 19981220 ccgccgctcccgccgcgccg 19981201
>dbj|AP004691.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0453D01 Length = 147461 Score = 63.9 bits (32), Expect = 5e-07 Identities = 113/140 (80%) Strand = Plus / Plus Query: 339 aagaacttggccacagagtttacagaaacgttgagagagactttcttccacgacaacccg 398 |||||||| || | |||||||| ||| || |||||||||||||||||||| |||||||| Sbjct: 16872 aagaactttgcgagagagtttagagacacattgagagagactttcttccatgacaaccca 16931 Query: 399 ctgcgtgagtacaagggtcaatccggaccgaggaggttcatgatggggctcgagttcttg 458 | || ||||||||| ||||| ||| || | ||||||||||| ||| ||||| || Sbjct: 16932 ttacgccagtacaaggaccaatctggatcggcaaagttcatgatggcgctgcagttcctg 16991 Query: 459 tttccaatatttgggtgggg 478 || ||||| |||| |||||| Sbjct: 16992 ttcccaatctttgagtgggg 17011
>gb|L27277.1|MLURHO Micrococcus luteus Rho factor (rho) gene, complete cds Length = 2402 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccgacgccg 110 ||||||||| |||||||||||||||| Sbjct: 575 ccgccgctcgcgccgcgccgacgccg 600
>ref|XM_468738.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1496 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gctcccgccgcgccgacgccg 110 ||||||||||||||||||||| Sbjct: 240 gctcccgccgcgccgacgccg 220
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gctcccgccgcgccgacgccg 110 ||||||||||||||||||||| Sbjct: 126727 gctcccgccgcgccgacgccg 126707
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 gctcccgccgcgccgacgccg 110 ||||||||||||||||||||| Sbjct: 17437016 gctcccgccgcgccgacgccg 17437036
>gb|BT009428.1| Triticum aestivum clone wlmk1.pk0031.e7:fis, full insert mRNA sequence Length = 1558 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gctcccgccgcgccgacgccg 110 ||||||||||||||||||||| Sbjct: 168 gctcccgccgcgccgacgccg 148
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 gctcccgccgcgccgacgccg 110 ||||||||||||||||||||| Sbjct: 17430557 gctcccgccgcgccgacgccg 17430577
>dbj|AK070282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A21, full insert sequence Length = 1506 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gctcccgccgcgccgacgccg 110 ||||||||||||||||||||| Sbjct: 250 gctcccgccgcgccgacgccg 230
>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome Length = 1799146 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 acgttgagagagactttcttc 386 ||||||||||||||||||||| Sbjct: 965191 acgttgagagagactttcttc 965211
>gb|DQ217171.1| Taeniopygia guttata clone 0058P0033B10 small nuclear ribonucleoprotein polypeptide B variant 1-like mRNA, complete sequence Length = 980 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 58 ccgccgctcccgccgcgccg 39
>ref|NM_029273.2| Mus musculus SLIT and NTRK-like family, member 5 (Slitrk5), transcript variant 1, mRNA Length = 4545 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tggccacagagtttacagaa 365 |||||||||||||||||||| Sbjct: 1569 tggccacagagtttacagaa 1550
>ref|NM_198865.1| Mus musculus SLIT and NTRK-like family, member 5 (Slitrk5), transcript variant 2, mRNA Length = 4829 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tggccacagagtttacagaa 365 |||||||||||||||||||| Sbjct: 1569 tggccacagagtttacagaa 1550
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 90497 ccgccgctcccgccgcgccg 90478
>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08, complete sequence Length = 115026 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 46798 ccgccgctcccgccgcgccg 46779
>gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, complete sequence Length = 203276 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tggccacagagtttacagaa 365 |||||||||||||||||||| Sbjct: 11908 tggccacagagtttacagaa 11889
>gb|BC065107.1| Mus musculus SLIT and NTRK-like family, member 5, mRNA (cDNA clone MGC:86113 IMAGE:30357422), complete cds Length = 4174 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tggccacagagtttacagaa 365 |||||||||||||||||||| Sbjct: 1188 tggccacagagtttacagaa 1169
>gb|AC102368.6| Mus musculus chromosome 14, clone RP23-220D8, complete sequence Length = 208781 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tggccacagagtttacagaa 365 |||||||||||||||||||| Sbjct: 174736 tggccacagagtttacagaa 174717
>emb|AL139097.16| Human DNA sequence from clone RP1-125E8 on chromosome 6, complete sequence Length = 112533 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gaagaacttggccacagagt 357 |||||||||||||||||||| Sbjct: 86197 gaagaacttggccacagagt 86178
>emb|AL662941.3|OSJN00147 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074B10, complete sequence Length = 165400 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 93327 ccgccgctcccgccgcgccg 93308
>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0015J03, complete sequence Length = 165933 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 68710 ccgccgctcccgccgcgccg 68729
>emb|AJ512817.1|TAE512817 Triticum aestivum stA1.1a gene for sulphate transporter, exons 1-14 Length = 4072 Score = 40.1 bits (20), Expect = 7.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 375 gagactttcttccacgacaacccgctgcgtgagtacaagg 414 ||||| |||||| |||| | ||||||||||||||||||| Sbjct: 837 gagacattcttcgccgacgatccgctgcgtgagtacaagg 876
>gb|AC090488.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0081F12 from chromosome 10, complete sequence Length = 128388 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 76637 ccgccgctcccgccgcgccg 76656
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 atggttcatcatatatctga 244 |||||||||||||||||||| Sbjct: 1983728 atggttcatcatatatctga 1983709
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 3188888 ccgccgctcccgccgcgccg 3188869
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 11577975 ccgccgctcccgccgcgccg 11577994 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 2056477 ccgccgctcccgccgcgccg 2056496 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 2047090 ccgccgctcccgccgcgccg 2047109
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 4415029 ccgccgctcccgccgcgccg 4415048 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 4301169 ccgccgctcccgccgcgccg 4301188
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 26808558 ccgccgctcccgccgcgccg 26808539
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 13435328 ccgccgctcccgccgcgccg 13435309 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 13240941 ccgccgctcccgccgcgccg 13240960
>dbj|AK173062.1| Mus musculus mRNA for mKIAA0918 protein Length = 3406 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tggccacagagtttacagaa 365 |||||||||||||||||||| Sbjct: 600 tggccacagagtttacagaa 581
>ref|XM_224485.3| PREDICTED: Rattus norvegicus SLIT and NTRK-like family, member 5 (predicted) (Slitrk5_predicted), mRNA Length = 4808 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tggccacagagtttacagaa 365 |||||||||||||||||||| Sbjct: 1568 tggccacagagtttacagaa 1549
>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0042G06 Length = 123571 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 110971 ccgccgctcccgccgcgccg 110990
>dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0622F08 Length = 140628 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 48868 ccgccgctcccgccgcgccg 48887
>dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E03 Length = 126845 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 21257 ccgccgctcccgccgcgccg 21238
>dbj|AP005521.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0477F03 Length = 176120 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 53071 ccgccgctcccgccgcgccg 53052
>dbj|AB097574.1| Mus musculus Sltk5 gene for neuronal transmembrane protein Slitrk5, complete cds Length = 2874 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 tggccacagagtttacagaa 365 |||||||||||||||||||| Sbjct: 952 tggccacagagtttacagaa 933
>emb|AL773557.21| Mouse DNA sequence from clone RP23-391F9 on chromosome 2, complete sequence Length = 215139 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 ggaattacagtctcaacaagttca 504 ||||||||||||||| |||||||| Sbjct: 103132 ggaattacagtctcatcaagttca 103109
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cccgccgcgccgacgccggg 112 |||||||||||||||||||| Sbjct: 1294496 cccgccgcgccgacgccggg 1294477
>dbj|AK115436.1| Ciona intestinalis cDNA, clone:cieg052n23, full insert sequence Length = 1750 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 agaagaagttccaatagcag 222 |||||||||||||||||||| Sbjct: 1231 agaagaagttccaatagcag 1250
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 4415850 ccgccgctcccgccgcgccg 4415869 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 4301990 ccgccgctcccgccgcgccg 4302009
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 11577646 ccgccgctcccgccgcgccg 11577665 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 2056428 ccgccgctcccgccgcgccg 2056447 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 2047041 ccgccgctcccgccgcgccg 2047060
>emb|AL772424.5|CNS08CA2 Oryza sativa chromosome 12, . BAC OJ1118_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 108927 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 82853 ccgccgctcccgccgcgccg 82834
>emb|AL928783.4|CNS08CCD Oryza sativa chromosome 12, . BAC OSJNBa0028B04 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158885 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 87370 ccgccgctcccgccgcgccg 87389 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ccgccgctcccgccgcgccg 104 |||||||||||||||||||| Sbjct: 77983 ccgccgctcccgccgcgccg 78002
>emb|AL807763.7| Mouse DNA sequence from clone RP23-28B24 on chromosome 4, complete sequence Length = 219463 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ggcccatctcaagcaccact 310 |||||||||||||||||||| Sbjct: 132848 ggcccatctcaagcaccact 132867 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,795,778 Number of Sequences: 3902068 Number of extensions: 3795778 Number of successful extensions: 71728 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71070 Number of HSP's gapped (non-prelim): 656 length of query: 525 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 502 effective length of database: 17,143,297,704 effective search space: 8605935447408 effective search space used: 8605935447408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
