ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal12f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAAD_THEAC (Q9HJ72) Probable aromatic acid decarboxylase (EC 4.1... 30 1.1
2NR6A1_HUMAN (Q15406) Orphan nuclear receptor NR6A1 (Germ cell nu... 30 1.1
3HBB_MERMR (O13078) Hemoglobin beta subunit (Hemoglobin beta chai... 29 3.1
4COBD_SALTY (P97084) Threonine-phosphate decarboxylase (EC 4.1.1.... 28 4.0
5P2RX7_MOUSE (Q9Z1M0) P2X purinoceptor 7 (ATP receptor) (P2X7) (P... 28 4.0
6MAON_MOUSE (Q8BMF3) NADP-dependent malic enzyme, mitochondrial p... 28 5.2
7ZPR1_CAEEL (O16999) Zinc-finger protein ZPR1 homolog 28 5.2
8UREE_EDWIC (Q6J171) Urease accessory protein ureE 28 6.8
9PHK_STRAW (Q82NM9) Probable phosphoketolase (EC 4.1.2.-) 28 6.8
10HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38) 28 6.8
11VA2_SOLIN (P35775) Venom allergen 2 precursor (Venom allergen II... 27 8.9
12COBD_SALTI (Q8Z8H8) Threonine-phosphate decarboxylase (EC 4.1.1.... 27 8.9
13ERCC4_HUMAN (Q92889) DNA repair endonuclease XPF (EC 3.1.-.-) (D... 27 8.9

>PAAD_THEAC (Q9HJ72) Probable aromatic acid decarboxylase (EC 4.1.1.-)|
          Length = 180

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +3

Query: 183 FLKICLIISPCNMGTCSRIAAGCAD-LLFQAASRSL 287
           FL   ++I PC++ T S+IAAG +D L+ +AA+ SL
Sbjct: 73  FLFDSMVIVPCSITTISKIAAGISDTLITRAAAVSL 108



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>NR6A1_HUMAN (Q15406) Orphan nuclear receptor NR6A1 (Germ cell nuclear factor)|
           (GCNF) (Retinoid receptor-related testis-specific
           receptor) (RTR)
          Length = 480

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = -1

Query: 335 LPEAPANGL------HVDPGSAERATGCLEQQICATCGDS*TSTH 219
           LP  P NG        +DPG+   +    EQ+ C  CGD  T  H
Sbjct: 27  LPPPPRNGFCQDELAELDPGTISVSDDRAEQRTCLICGDRATGLH 71



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>HBB_MERMR (O13078) Hemoglobin beta subunit (Hemoglobin beta chain)|
           (Beta-globin)
          Length = 146

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 353 STYAHHLPEAPANGLHVDPGSAERATGCLEQQICATCGDS*T-STHVAW 210
           +TYA  L +  ++ LHVDP +      CL   I A  G + T  T VAW
Sbjct: 83  NTYAE-LSQLHSDKLHVDPDNFRLLADCLTVVIAAKMGTAFTVETQVAW 130



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>COBD_SALTY (P97084) Threonine-phosphate decarboxylase (EC 4.1.1.81)|
           (L-threonine-O-3-phosphate decarboxylase)
          Length = 364

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 159 GAAWGSKGCSSSRWAIREATSW 94
           G A    GC   RW++REA  W
Sbjct: 112 GRALAQSGCEIRRWSLREADGW 133



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>P2RX7_MOUSE (Q9Z1M0) P2X purinoceptor 7 (ATP receptor) (P2X7) (Purinergic|
           receptor) (P2Z receptor)
          Length = 595

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 237 IAAGCADLLFQAASRSLC*AGIYVKPICRC 326
           +A  C DLL    S + C +G+Y  P C+C
Sbjct: 346 LATVCIDLLINTYSSAFCRSGVY--PYCKC 373



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>MAON_MOUSE (Q8BMF3) NADP-dependent malic enzyme, mitochondrial precursor (EC|
           1.1.1.40) (NADP-ME) (Malic enzyme 3)
          Length = 604

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 389 GDQLKYLPHYCCSTYAHHLPEAPANGLHVDPG 294
           G +L  +P   CS+     P APA G H   G
Sbjct: 8   GARLTSVPRIACSSLRRQAPSAPAQGCHSKSG 39



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>ZPR1_CAEEL (O16999) Zinc-finger protein ZPR1 homolog|
          Length = 455

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/55 (23%), Positives = 18/55 (32%)
 Frame = +2

Query: 65  DLACPYCYEDHDVASLIXXXXXXXXXXXXXXXCPICSEKVSKDMLNHITMQHGYL 229
           D  CP C ED +   +                CP C  K ++        +HG L
Sbjct: 25  DSVCPVCEEDGETRIMCTSIPYYRAVILMSFECPHCGHKNNEIQSGEAVQEHGTL 79



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>UREE_EDWIC (Q6J171) Urease accessory protein ureE|
          Length = 225

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 164 PICSEKVSKDMLNHITMQHGYLFKNRRR 247
           P+ +EK+    L+++T++HG ++KN  R
Sbjct: 15  PVWAEKLKAYELDYLTLEHGDMYKNSCR 42



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>PHK_STRAW (Q82NM9) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 793

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 5   ARGRGWTSWTWXGDENAGRPD--LAC 76
           ARG G   W W G +N G PD  LAC
Sbjct: 607 ARGAG--IWEWAGTQNDGEPDVVLAC 630



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>HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38)|
          Length = 1073

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -1

Query: 365 HYCCSTYAHHLPEAPANGLHVDPGSAERATGCLEQ---QICATCGDS*TSTH 219
           H     +A  L  AP N     P SA+   G L Q   Q+CA CGD+    H
Sbjct: 705 HSHAHAHALQLNSAP-NSAASSPASADLQAGRLLQAPSQLCAVCGDTAACQH 755



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>VA2_SOLIN (P35775) Venom allergen 2 precursor (Venom allergen II) (Allergen|
           Sol i 2) (Sol i II)
          Length = 138

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 171 VPKRFLKIC--LIISPCNMGTCSRIAAGCAD 257
           + +R +K+C  +I  P N+  C ++A+ C D
Sbjct: 73  IKERSMKMCTKIITDPANVENCKKVASRCVD 103



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>COBD_SALTI (Q8Z8H8) Threonine-phosphate decarboxylase (EC 4.1.1.81)|
           (L-threonine-O-3-phosphate decarboxylase)
          Length = 364

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 159 GAAWGSKGCSSSRWAIREATSW 94
           G A    GC   RW++REA  W
Sbjct: 112 GRALAQIGCEIRRWSLREADGW 133



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>ERCC4_HUMAN (Q92889) DNA repair endonuclease XPF (EC 3.1.-.-) (DNA excision|
           repair protein ERCC-4) (DNA-repair protein complementing
           XP-F cell) (Xeroderma pigmentosum group F complementing
           protein)
          Length = 905

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 255 LRNLRRFLNKYPCCMVI*LSISLETFSEQIGQGAAW 148
           LR L ++L++Y C   + L  SL    +  GQ + W
Sbjct: 280 LRTLLQYLSQYDCVTFLNLLESLRATEKAFGQNSGW 315


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,963,245
Number of Sequences: 219361
Number of extensions: 769700
Number of successful extensions: 2607
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2607
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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