ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal12e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RAG1_KLULA (P18631) Low-affinity glucose transporter (Hexose tra... 30 1.8
2HXT3_YEAST (P32466) Low-affinity glucose transporter HXT3 28 8.7
3SYLM_NEUCR (P15181) Leucyl-tRNA synthetase, mitochondrial precur... 28 8.7
4HXT5_YEAST (P38695) Probable glucose transporter HXT5 28 8.7

>RAG1_KLULA (P18631) Low-affinity glucose transporter (Hexose transporter 1)|
          Length = 567

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 24  SMVNW*VSFLVGKLVEFVLS--FFFFRYIFMMCLAVA 128
           S  NW   FL+G    F+ S   F++ Y+FM C+  A
Sbjct: 469 SASNWIWGFLIGFFTPFITSAIHFYYGYVFMGCMVFA 505



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>HXT3_YEAST (P32466) Low-affinity glucose transporter HXT3|
          Length = 567

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 33  NW*VSFLVGKLVEFVLSF--FFFRYIFMMCLAVA 128
           NW   FL+G    F+     F++ Y+FM C+  A
Sbjct: 469 NWLWGFLIGFFTPFITGAINFYYGYVFMGCMVFA 502



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>SYLM_NEUCR (P15181) Leucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.4) (Leucine--tRNA ligase) (LeuRS)
          Length = 994

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 116 THHKNITKEKKGKNELYQFPYKKGHLPINHAEI 18
           +  K   +++K K  L  FPY  GHL + H  +
Sbjct: 74  SREKGNKEDEKNKYVLPMFPYPSGHLHLGHLRV 106



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>HXT5_YEAST (P38695) Probable glucose transporter HXT5|
          Length = 592

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 24  SMVNW*VSFLVGKLVEFVLSF--FFFRYIFMMCLAVA 128
           S  NW   FL+     F+ S   F++ Y+FM C+  A
Sbjct: 490 SACNWIWGFLISFFTPFITSAINFYYGYVFMGCMVFA 526


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,223,777
Number of Sequences: 219361
Number of extensions: 327233
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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