>RPA1_SCHPO (P15398) DNA-directed RNA polymerase I 190 kDa polypeptide (EC|
           2.7.7.6)
          Length = 1689

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +1

Query: 55  PHEWSSQPENTSETGALISARPVTFTIRTGEAGSAAVAVYNLLAKLQLSFLYVIGLIVMG 234
           PH+W       +E G LIS  P+T   RT  A        NL++    S+  +I      
Sbjct: 535 PHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISS-PYSYSRLINTNKKV 593

Query: 235 FEHMRN 252
           + H+RN
Sbjct: 594 YRHVRN 599

>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2|
            protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile
            X E mental retardation syndrome protein)
          Length = 1311

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +1

Query: 7    NNALMDLIK--ATKSAVTPHEWSSQPENTSETGALISARPVTFTIRTGEAGSAAVAVYNL 180
            + +LM+  K  A+K A  P  W S  +NT    +L +  P+      G   +  V +   
Sbjct: 1182 SRSLMEYFKQNASKVAQIPSPWVSNGKNTPSPVSLNNVSPIN---AMGNCNNGPVTIPQR 1238

Query: 181  LAKLQLSFLYVIGLIVMGFEH 243
            +  +  S + +   ++ G+EH
Sbjct: 1239 IHHMAASHVNITSNVLRGYEH 1259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,269,447
Number of Sequences: 219361
Number of extensions: 1261584
Number of successful extensions: 3223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3222
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)