ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal12e01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK060785.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D03, full insert sequence Length = 1090 Score = 218 bits (110), Expect = 1e-53 Identities = 254/302 (84%) Strand = Plus / Plus Query: 1 gaggtcaacaacgcactaatggatcttataaaggccaccaagtctgcggtgacgcctcac 60 ||||||||||| ||||||||||| | ||||| ||||| || ||| | ||| ||| | Sbjct: 453 gaggtcaacaatgcactaatggaattaataaaagccacaaaatctatgatgaaacctgag 512 Query: 61 gagtggtcttcccagccagaaaacacatcagaaaccggggcacttatttctgcaaggcct 120 || ||||| ||||||||||| || |||||||||||||||| |||||||||||||| ||| Sbjct: 513 gaatggtcatcccagccagagaattcatcagaaaccggggctcttatttctgcaagacct 572 Query: 121 gtaaccttcacgatacgaacaggcgaagctggcagcgctgctgtagcagtgtataaccta 180 || || |||| |||||||||| || | || | || || ||||||| |||||| || Sbjct: 573 gtttccgtcacaatacgaacagatgatgggggaaatgccgcaatagcagtctataactta 632 Query: 181 cttgcaaagttgcaactaagctttctttatgtcataggcctgatagtgatggggtttgag 240 ||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 633 cttgccaagctgcaactaagctttctttatgtcataggagtgatactgatggggtttgag 692 Query: 241 catatgaggaacattgtaagagtaatgaagcccgtgagggtcgcagcgatcgagtcataa 300 ||||||||||||||||||| |||||||||||| || ||||||||||| ||||| |||||| Sbjct: 693 catatgaggaacattgtaaaagtaatgaagccagtaagggtcgcagcaatcgaatcataa 752 Query: 301 ga 302 || Sbjct: 753 ga 754
>dbj|AK071306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088C20, full insert sequence Length = 1860 Score = 210 bits (106), Expect = 3e-51 Identities = 268/322 (83%) Strand = Plus / Plus Query: 1 gaggtcaacaacgcactaatggatcttataaaggccaccaagtctgcggtgacgcctcac 60 ||||||||||| ||||||||||| | ||||| ||||| || ||| | ||| ||| | Sbjct: 1223 gaggtcaacaatgcactaatggaattaataaaagccacaaaatctatgatgaaacctgag 1282 Query: 61 gagtggtcttcccagccagaaaacacatcagaaaccggggcacttatttctgcaaggcct 120 || ||||| ||||||||||| || |||||||||||||||| |||||||||||||| ||| Sbjct: 1283 gaatggtcatcccagccagagaattcatcagaaaccggggctcttatttctgcaagacct 1342 Query: 121 gtaaccttcacgatacgaacaggcgaagctggcagcgctgctgtagcagtgtataaccta 180 || || |||| |||||||||| || | || | || || ||||||| |||||| || Sbjct: 1343 gtttccgtcacaatacgaacagatgatgggggaaatgccgcaatagcagtctataactta 1402 Query: 181 cttgcaaagttgcaactaagctttctttatgtcataggcctgatagtgatggggtttgag 240 ||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1403 cttgccaagctgcaactaagctttctttatgtcatagaagtgatactgatggggtttgag 1462 Query: 241 catatgaggaacattgtaagagtaatgaagcccgtgagggtcgcagcgatcgagtcataa 300 ||||||||||||||||||| |||||||||||| || ||||||||||| ||||| |||||| Sbjct: 1463 catatgaggaacattgtaaaagtaatgaagccagtaagggtcgcagcaatcgaatcataa 1522 Query: 301 gacacagaggacatgtaaatta 322 || ||| | ||||||||||| Sbjct: 1523 gaaacaaaactcatgtaaatta 1544
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 196 bits (99), Expect = 5e-47 Identities = 186/215 (86%) Strand = Plus / Minus Query: 87 atcagaaaccggggcacttatttctgcaaggcctgtaaccttcacgatacgaacaggcga 146 ||||||||||||||| |||||||||||||| ||||| || |||| |||||||||| || Sbjct: 88246 atcagaaaccggggctcttatttctgcaagacctgtttccgtcacaatacgaacagatga 88187 Query: 147 agctggcagcgctgctgtagcagtgtataacctacttgcaaagttgcaactaagctttct 206 | || | || || ||||||| |||||| ||||||| ||| |||||||||||||||| Sbjct: 88186 tgggggaaatgccgcaatagcagtctataacttacttgccaagctgcaactaagctttct 88127 Query: 207 ttatgtcataggcctgatagtgatggggtttgagcatatgaggaacattgtaagagtaat 266 |||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct: 88126 ttatgtcataggagtgatactgatggggtttgagcatatgaggaacattgtaaaagtaat 88067 Query: 267 gaagcccgtgagggtcgcagcgatcgagtcataag 301 |||||| || ||||||||||| ||||| ||||||| Sbjct: 88066 gaagccagtaagggtcgcagcaatcgaatcataag 88032
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 196 bits (99), Expect = 5e-47 Identities = 186/215 (86%) Strand = Plus / Minus Query: 87 atcagaaaccggggcacttatttctgcaaggcctgtaaccttcacgatacgaacaggcga 146 ||||||||||||||| |||||||||||||| ||||| || |||| |||||||||| || Sbjct: 26707249 atcagaaaccggggctcttatttctgcaagacctgtttccgtcacaatacgaacagatga 26707190 Query: 147 agctggcagcgctgctgtagcagtgtataacctacttgcaaagttgcaactaagctttct 206 | || | || || ||||||| |||||| ||||||| ||| |||||||||||||||| Sbjct: 26707189 tgggggaaatgccgcaatagcagtctataacttacttgccaagctgcaactaagctttct 26707130 Query: 207 ttatgtcataggcctgatagtgatggggtttgagcatatgaggaacattgtaagagtaat 266 |||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct: 26707129 ttatgtcataggagtgatactgatggggtttgagcatatgaggaacattgtaaaagtaat 26707070 Query: 267 gaagcccgtgagggtcgcagcgatcgagtcataag 301 |||||| || ||||||||||| ||||| ||||||| Sbjct: 26707069 gaagccagtaagggtcgcagcaatcgaatcataag 26707035
>dbj|AK071703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112L03, full insert sequence Length = 1561 Score = 115 bits (58), Expect = 1e-22 Identities = 76/82 (92%) Strand = Plus / Plus Query: 221 tgatagtgatggggtttgagcatatgaggaacattgtaagagtaatgaagcccgtgaggg 280 ||||| ||||||||||||||||||||||||||||||||| |||||||||||| || |||| Sbjct: 1144 tgatactgatggggtttgagcatatgaggaacattgtaaaagtaatgaagccagtaaggg 1203 Query: 281 tcgcagcgatcgagtcataaga 302 ||||||| ||||| |||||||| Sbjct: 1204 tcgcagcaatcgaatcataaga 1225
>ref|XM_475819.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1077 Score = 111 bits (56), Expect = 2e-21 Identities = 74/80 (92%) Strand = Plus / Plus Query: 221 tgatagtgatggggtttgagcatatgaggaacattgtaagagtaatgaagcccgtgaggg 280 ||||| ||||||||||||||||||||||||||||||||| |||||||||||| || |||| Sbjct: 998 tgatactgatggggtttgagcatatgaggaacattgtaaaagtaatgaagccagtaaggg 1057 Query: 281 tcgcagcgatcgagtcataa 300 ||||||| ||||| |||||| Sbjct: 1058 tcgcagcaatcgaatcataa 1077
>emb|AL929510.17| Mouse DNA sequence from clone RP23-241O13 on chromosome 2, complete sequence Length = 160386 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 413 gaacctatttttcctcctcccttgag 438 ||||||||||||||||||||| |||| Sbjct: 141584 gaacctatttttcctcctcccctgag 141609
>dbj|AP006357.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT36C13, TM0100a, complete sequence Length = 79575 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 219 cctgatagtgatggggtttgag 240 |||||||||||||||||||||| Sbjct: 39724 cctgatagtgatggggtttgag 39703
>emb|AL158832.13| Human DNA sequence from clone RP11-59O6 on chromosome 9 Contains two novel genes, the 5' end of a novel gene (contains FLJ36253 and FLJ00026) and a CpG island, complete sequence Length = 167531 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 atatgaggaacattgtaagag 262 ||||||||||||||||||||| Sbjct: 166490 atatgaggaacattgtaagag 166510
>emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on chromosome 11 Contains the 3' end of the Ulk2 gene for Unc-51 like kinase 2 (C. elegans), the Prpsap2 gene for phosphoribosyl pyrophosphate synthetase-associated protein 2, the gene for a novel sodium/glucose cotransporter protein, the gene for a novel protein (2310040C09Rik), the Grap gene for GRB2-related adaptor protein and a CpG island, complete sequence Length = 186359 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 tttcatgtctcctccatatac 369 ||||||||||||||||||||| Sbjct: 176029 tttcatgtctcctccatatac 176009
>gb|AC009394.5| Drosophila melanogaster clone BACR03J17, complete sequence Length = 199043 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gcgaagctggcagcgctgct 162 |||||||||||||||||||| Sbjct: 86674 gcgaagctggcagcgctgct 86655
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gctggcagcgctgctgtagc 167 |||||||||||||||||||| Sbjct: 1339044 gctggcagcgctgctgtagc 1339025
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gaagctggcagcgctgctgt 164 |||||||||||||||||||| Sbjct: 1796396 gaagctggcagcgctgctgt 1796377
>gb|AC068533.7| Homo sapiens PAC clone RP5-1132H15 from 7, complete sequence Length = 140974 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 341 agatcatatttcatgtctcctcca 364 ||||||||| |||||||||||||| Sbjct: 11598 agatcatatgtcatgtctcctcca 11575
>gb|AE003721.3| Drosophila melanogaster chromosome 3R, section 59 of 118 of the complete sequence Length = 224889 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gcgaagctggcagcgctgct 162 |||||||||||||||||||| Sbjct: 107168 gcgaagctggcagcgctgct 107149
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gaagctggcagcgctgctgt 164 |||||||||||||||||||| Sbjct: 1817481 gaagctggcagcgctgctgt 1817462 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,735,238 Number of Sequences: 3902068 Number of extensions: 3735238 Number of successful extensions: 69777 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69662 Number of HSP's gapped (non-prelim): 114 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
