ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal12d23 |
|---|---|
| Clone Library Name | barley_pub |
>AROC_BARHE (Q6G4D4) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 366 Score = 32.7 bits (73), Expect = 0.25 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -2 Query: 221 SLSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRREL 99 +L C + PGIT + SYLN+ + S + +RREL Sbjct: 22 ALGCVIDGCPPGITFTLSDIQSYLNKRKPGQSKYTTQRREL 62
>AROC_NITEU (Q82TK9) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 390 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -2 Query: 224 PSLSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRRE 102 P++ C + PG+TL + + L+R + S H +RRE Sbjct: 21 PAIGCIVDGCPPGLTLSVEDIQQELDRRKPGTSRHVTQRRE 61
>AROC_BRUSU (P63608) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 364 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 7/60 (11%) Frame = -2 Query: 260 TRNSVGRFLR---WRPS----LSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRRE 102 + NS G R W S L C + PGIT + S+L++ + S + +RRE Sbjct: 2 SHNSFGHLFRVTTWGESHGLALGCVVDGCPPGITFTEAEIQSFLDKRKPGQSKYTTQRRE 61
>AROC_BRUME (P63607) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 364 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 7/60 (11%) Frame = -2 Query: 260 TRNSVGRFLR---WRPS----LSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRRE 102 + NS G R W S L C + PGIT + S+L++ + S + +RRE Sbjct: 2 SHNSFGHLFRVTTWGESHGLALGCVVDGCPPGITFTEAEIQSFLDKRKPGQSKYTTQRRE 61
>AROC_BUCBP (Q89AX9) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 355 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Frame = -2 Query: 254 NSVGRFLRWR-------PSLSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRRELR 96 NS+G+ R P L C + + PG+ + L+R R S + +RREL Sbjct: 4 NSIGKLFRVTTFGESHGPKLGCIIDGTPPGLEISENDFQKELDRRRPGTSKYTTQRRELD 63 Query: 95 K 93 K Sbjct: 64 K 64
>AROC_AZOSE (Q5P1K1) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 377 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = -2 Query: 224 PSLSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRRE 102 P++ C + PG+ + +Q + L+R + S H +RRE Sbjct: 21 PAIGCVVDGCPPGMPISTQEIQVELDRRKPGTSRHVTQRRE 61
>SYNPO_RAT (Q9Z327) Synaptopodin| Length = 931 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -2 Query: 224 PSLSCATNPSSPGITLVSQAVTSYLNRPRATLSSH 120 P+ NPSSP TL + A S+ N+P A ++ + Sbjct: 305 PAADINQNPSSPNATLTTAASNSHHNQPTADVNQN 339
>AROC_YERPE (Q8ZD41) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 360 Score = 28.1 bits (61), Expect = 6.1 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Frame = -2 Query: 254 NSVGRFLRWRP-------SLSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRREL 99 NS+G+F R +L C + PGI + + L+R R S + +RREL Sbjct: 3 NSIGQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRREL 61
>AROC_YERPS (Q668V5) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 28.1 bits (61), Expect = 6.1 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Frame = -2 Query: 254 NSVGRFLRWRP-------SLSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRREL 99 NS+G+F R +L C + PGI + + L+R R S + +RREL Sbjct: 4 NSIGQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRREL 62
>AROC_XANAC (Q8PJ20) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 367 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/41 (29%), Positives = 20/41 (48%) Frame = -2 Query: 224 PSLSCATNPSSPGITLVSQAVTSYLNRPRATLSSHCARRRE 102 P++ C + PG+ + + T L R + S H + RRE Sbjct: 21 PAIGCVVDGCPPGLEIAPEEFTHDLQRRASGKSRHTSARRE 61
>BBS5_BRARE (Q7ZWB7) Bardet-Biedl syndrome 5 protein homolog| Length = 342 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +1 Query: 103 SLLLAQWEDRVARGLFRYDVTACETKVIPGE 195 S+L A WEDR R +D+TA + K PGE Sbjct: 3 SVLDALWEDRDVR----FDITAQQMKTRPGE 29
>RPOC_BUCAP (P41185) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 27.7 bits (60), Expect = 7.9 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Frame = +1 Query: 76 ELPTEFFLNSLLLAQWEDRV----ARGLFRYDVTACETKVIPGELGFVAQLNEGRHLKK 240 E+P ++FL + Q +DRV L R + TK I G L VA L E R K+ Sbjct: 1094 EMPAQYFLPGKAIVQLDDRVQISSGDTLARVPQESGGTKDITGGLPRVADLFEARRPKE 1152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,539,115 Number of Sequences: 219361 Number of extensions: 628177 Number of successful extensions: 1551 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1525 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1551 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
