>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  329 bits (843), Expect = 4e-90
 Identities = 161/162 (99%), Positives = 161/162 (99%)
 Frame = +1

Query: 73  FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGL 252
           FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGL
Sbjct: 5   FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGL 64

Query: 253 AYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA 432
           AYDISDDQQDITRGKGIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA
Sbjct: 65  AYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA 124

Query: 433 PAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           PAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE
Sbjct: 125 PAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 166

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  296 bits (758), Expect = 3e-80
 Identities = 146/164 (89%), Positives = 153/164 (93%), Gaps = 2/164 (1%)
 Frame = +1

Query: 73  FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD--KWK 246
           FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS  NRF VMA E +DE + TD  +WK
Sbjct: 5   FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQDRWK 63

Query: 247 GLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFY 426
           GLAYDISDDQQDITRGKG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YDFDNTMGGFY
Sbjct: 64  GLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFY 123

Query: 427 IAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           IAP+FMDKLVVH+SKNFMTLPNIK+PLILGIWGGKGQGKSFQCE
Sbjct: 124 IAPSFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCE 167

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  259 bits (663), Expect = 3e-69
 Identities = 131/168 (77%), Positives = 146/168 (86%), Gaps = 6/168 (3%)
 Frame = +1

Query: 73  FSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENIDEKRNTD- 237
           FSSTVGAPASTPT  +FLGKKL K QV++AV YHGKSS +N RF  MAA+ +DE + TD 
Sbjct: 5   FSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDE 64

Query: 238 -KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTM 414
            +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+FDN M
Sbjct: 65  DRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMM 124

Query: 415 GGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
            GFYIA  FMDKLVVHLSKNFMTLPNIK+PLILGIWGGKGQGKSFQCE
Sbjct: 125 DGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCE 172

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  252 bits (644), Expect = 4e-67
 Identities = 128/166 (77%), Positives = 141/166 (84%), Gaps = 4/166 (2%)
 Frame = +1

Query: 73  FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNTD--K 240
           FSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + TD  +
Sbjct: 5   FSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQTDADR 58

Query: 241 WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 420
           WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYDFDNTM G
Sbjct: 59  WKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDG 118

Query: 421 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
            YIAPAFMDKL+VHL+KNFMTLPNIK+PLILGIWGGKGQGKSFQCE
Sbjct: 119 LYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCE 164

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  215 bits (547), Expect = 8e-56
 Identities = 108/161 (67%), Positives = 126/161 (78%)
 Frame = +1

Query: 76  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLA 255
           S  V APAST   FLGKK    V +   +   + K+N    + A   D++ + D+W+GLA
Sbjct: 23  SGAVSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLA 75

Query: 256 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAP 435
           YD SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+ DN M GFYIAP
Sbjct: 76  YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAP 135

Query: 436 AFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           AFMDKLVVH++KNF+TLPNIK+PLILGIWGGKGQGKSFQCE
Sbjct: 136 AFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCE 176

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  213 bits (543), Expect = 2e-55
 Identities = 107/163 (65%), Positives = 127/163 (77%), Gaps = 2/163 (1%)
 Frame = +1

Query: 76  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK--WKG 249
           SS+   P+ST   FLG  LKK     VN    +SK +  ++    ++DE + TDK  WKG
Sbjct: 22  SSSASVPSST---FLGSSLKK-----VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKG 73

Query: 250 LAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYI 429
           LA+D SDDQQDITRGKG VDSLFQAP G GTH A++SSYEY+S GLR+Y+FDN M G+YI
Sbjct: 74  LAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYI 133

Query: 430 APAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           APAFMDKLVVH++KNFMTLPN+K+PLILGIWGGKGQGKSFQCE
Sbjct: 134 APAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCE 176

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  209 bits (531), Expect = 6e-54
 Identities = 104/171 (60%), Positives = 127/171 (74%), Gaps = 11/171 (6%)
 Frame = +1

Query: 79  STVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE-NIDEK 225
           STVGA    P +  G   +  +  +  + G S K          +  F ++A E + D++
Sbjct: 6   STVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQEISEDQQ 65

Query: 226 RNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 405
            + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGLR+Y+ D
Sbjct: 66  TDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLD 125

Query: 406 NTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           N M GFYIAPAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKSFQCE
Sbjct: 126 NNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCE 176

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  209 bits (531), Expect = 6e-54
 Identities = 104/171 (60%), Positives = 127/171 (74%), Gaps = 11/171 (6%)
 Frame = +1

Query: 79  STVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE-NIDEK 225
           STVGA    P +  G   +  +  +  + G S K          +  F ++A E + D++
Sbjct: 6   STVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQEISEDQQ 65

Query: 226 RNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 405
            + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGLR+Y+ D
Sbjct: 66  TDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLD 125

Query: 406 NTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           N M GFYIAPAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKSFQCE
Sbjct: 126 NNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCE 176

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  207 bits (528), Expect = 1e-53
 Identities = 109/176 (61%), Positives = 126/176 (71%), Gaps = 16/176 (9%)
 Frame = +1

Query: 79  STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 216
           ST+GA   TP              T F GK LKK     V+    ++K+ R  V    ++
Sbjct: 6   STIGAVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRI-VAEQIDV 64

Query: 217 DEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLR 390
           D K+ TD  +WKGL  D SDDQQDITRGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR
Sbjct: 65  DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124

Query: 391 KYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           +Y+ DN + GFYIAPAFMDKLVVH++KNF+ LPNIK+PLILGIWGGKGQGKSFQCE
Sbjct: 125 QYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCE 180

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  204 bits (520), Expect = 1e-52
 Identities = 104/165 (63%), Positives = 123/165 (74%), Gaps = 4/165 (2%)
 Frame = +1

Query: 76  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE--NIDEKRNT--DKW 243
           +++V   +   T F GK LKK     V+        NR   +AAE  + D K+ T  D+W
Sbjct: 19  NNSVAGTSVPSTAFFGKTLKKVYGKGVS---SPKVTNRSLRIAAEEKDADPKKQTYSDRW 75

Query: 244 KGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGF 423
           KGL  D SDDQQDI RGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DNT+ GF
Sbjct: 76  KGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGF 135

Query: 424 YIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           YIAP+FMDKLVVH++KNF+ LPNIK+PLILG+WGGKGQGKSFQCE
Sbjct: 136 YIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCE 180

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  204 bits (518), Expect = 2e-52
 Identities = 102/160 (63%), Positives = 127/160 (79%), Gaps = 3/160 (1%)
 Frame = +1

Query: 88  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 258
           G  AS P++ F G  LKK ++S V  + K +  +   V A + I+E + T  D+W+GLAY
Sbjct: 22  GGGASGPSSAFFGTSLKKVISSRVP-NSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAY 80

Query: 259 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 438
           D+SDDQQDITRGKG+VDSLFQAP   GTH AV+SS++Y+S GLR+Y+FDN   GFYIAPA
Sbjct: 81  DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPA 140

Query: 439 FMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           F+DKLVVH++KNFMTLPNIK+PLILG+WGGKGQGKSFQCE
Sbjct: 141 FLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCE 180

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  202 bits (513), Expect = 7e-52
 Identities = 105/157 (66%), Positives = 117/157 (74%), Gaps = 1/157 (0%)
 Frame = +1

Query: 91  APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 267
           A AS PT+ FLG  LKK           SS+    TV AAEN  E++NTDKW  LA D S
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFS 77

Query: 268 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMD 447
           DDQ DI RGKG+VDSLFQAP   GTH  + SS+EY SQGLRKYD DN +G FYIAPAFMD
Sbjct: 78  DDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMD 137

Query: 448 KLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           KLVVH++KNF+ LPNIKIPLILG+WGGKGQGKSFQCE
Sbjct: 138 KLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCE 174

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  201 bits (512), Expect = 9e-52
 Identities = 107/160 (66%), Positives = 123/160 (76%), Gaps = 3/160 (1%)
 Frame = +1

Query: 88  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 258
           GA AS PT+ F G  LKK V S V  + K +  +   V A + I+E + T  D+WKGLAY
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVP-NSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAY 80

Query: 259 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 438
           DISDDQQDITRGKG+VD LFQAP   GTH AV+SSYEY+S GLR+   DN   GFYIAPA
Sbjct: 81  DISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKDGFYIAPA 138

Query: 439 FMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           F+DKLVVH++KNFMTLPNIK+PLILGIWGGKGQGKSFQCE
Sbjct: 139 FLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCE 178

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  200 bits (509), Expect = 2e-51
 Identities = 101/174 (58%), Positives = 122/174 (70%), Gaps = 14/174 (8%)
 Frame = +1

Query: 79  STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 216
           ST+GA +  P              T F GK LKK     V+       +NR   + A+ +
Sbjct: 6   STIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVS---SPKVSNRNLRVVAQEV 62

Query: 217 DEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKY 396
           DE +  D+WKGL  + SDDQQDI RGKG+VDSLFQAPTG GTH A+++SYEYVSQ L+ Y
Sbjct: 63  DETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTY 121

Query: 397 DFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
             DN + GFYIAPAFMDKLVVH++KNF+TLPNIK+PLILG+WGGKGQGKSFQCE
Sbjct: 122 QLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCE 175

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  199 bits (505), Expect = 6e-51
 Identities = 101/174 (58%), Positives = 122/174 (70%), Gaps = 14/174 (8%)
 Frame = +1

Query: 79  STVGAPASTPTN------------FLGKKLKKQVTSAVNYHGKSSK--ANRFTVMAAENI 216
           ST+GA   T  N            FLG +LK      V+    +SK     F ++A ++ 
Sbjct: 6   STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK------VSSRFTTSKMVTGNFKIVAEQDE 59

Query: 217 DEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKY 396
           +++   DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLSSYEY+S GLR Y
Sbjct: 60  EKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDY 119

Query: 397 DFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
            +DN + GFYIAPAFMDKL VH+ KNF+TLPNIK+PLILG+WGGKGQGKSFQCE
Sbjct: 120 SYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCE 173

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  138 bits (347), Expect = 1e-32
 Identities = 67/114 (58%), Positives = 85/114 (74%), Gaps = 3/114 (2%)
 Frame = +1

Query: 223 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 393
           ++   +W+ +    D SDDQQDITRG+ +VD LFQ   G  GTH AVLSS EY+SQ   +
Sbjct: 37  RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQS--R 94

Query: 394 YDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQC 555
             F+N   GFYI+PAF+DK+ +H++KNFM LP IK+PLILGIWGGKGQGK+FQC
Sbjct: 95  ASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQC 148

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 30/46 (65%), Positives = 40/46 (86%)
 Frame = +1

Query: 421 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           +YIAP F+DKL VH++KNF+ LP +++PLILGI G KG+GK+FQCE
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCE 48

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 29/46 (63%), Positives = 40/46 (86%)
 Frame = +1

Query: 421 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCE 558
           +YIAP F+DKL VH++KNF+ +P +++PLILGI G KG+GK+FQCE
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCE 48

>G6PI_PSEHT (Q3IKH4) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 548

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 370 YVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 549
           Y SQ +  YD    M   Y+    M+    H++    T+P   +P+I G+ G  GQ   +
Sbjct: 328 YTSQAILPYDQALHMLPAYLQQGEMESNGKHVNFAGETVPYTTVPIIWGMTGINGQHAFY 387

Query: 550 QC 555
           QC
Sbjct: 388 QC 389

>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +1

Query: 91  APASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISD 270
           +PA+ P+  +G+K++  V+   ++ G   K++   +   +    KR T ++ G  + +SD
Sbjct: 35  SPAADPSLMIGRKVEVPVS---DFTGNFRKSSTMVIFRVKECTGKRCTTEFIG--HKVSD 89

Query: 271 D--QQDITRGKGIVDSLFQAPTGDG 339
           D  ++ + R K  +D +  + T DG
Sbjct: 90  DTIRRMVRRRKERIDIIMPSKTKDG 114

>PTR2_CANAL (P46030) Peptide transporter PTR2|
          Length = 623

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -1

Query: 338 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 192
           P+P+ AWK+ S         CW    + E++Y R          ++FL  S FSAA+++
Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546

>PCRB_SULAC (Q4JAS3) Protein pcrB homolog|
          Length = 257

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -3

Query: 426 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRK 250
           +EA  G  E V P+A+  V    +DG+V        EER  + + +G  ++V G+++ +
Sbjct: 176 LEAGSGASETVKPEAIKVVKNTVKDGVVIVGGGVTSEERARNLVLAGADIIVTGNVIER 234

>ACCA_STRT2 (Q5M5R1) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 256

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +1

Query: 283 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 453
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 62  IQKGKNLQDNLNRNFGQPHPEGYRKALRLMKQAEKFGRSVVTFINTAGAYPGVGAEERGQ 121

Query: 454 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 540
              +++N M + ++K+P+I  I G  G G
Sbjct: 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 150

>TRPC_HALVO (P18304) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 251

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 26/95 (27%), Positives = 42/95 (44%)
 Frame = -3

Query: 531 LASPDTQDEWDLDVGQGHEVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAED 352
           L    T++E    +  G ++ G  +  L       +E   G  E + P+A  DVL+ AE 
Sbjct: 158 LVEVHTREELTAALAAGADIVGINNRDL-----GKLEVDLGTFEELAPEAPEDVLLVAES 212

Query: 351 GLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKT 247
           G+       R+ E   DAL  G  ++  GD+ + T
Sbjct: 213 GVQTVDDARRMREAGADALLVGTAIM-DGDVRQNT 246

>ACCA_STRT1 (Q5M174) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 256

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +1

Query: 283 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 453
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 62  IQKGKNLQDNLNRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 121

Query: 454 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 540
              +++N M + ++K+P+I  I G  G G
Sbjct: 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 150

>PRMA_LEGPH (Q5ZYB1) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -3

Query: 498 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 334
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   LV A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISFPEALQNPVHLVIANILLAPLI 233

Query: 333 ARGRLEERVHDALPSGDVLLVVG 265
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>ACCA_STRR6 (Q8DR13) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 255

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +1

Query: 283 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 453
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 61  IQKGKSLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 120

Query: 454 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 540
              +++N M + ++K+P+I  I G  G G
Sbjct: 121 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 149

>ACCA_STRPN (Q9FBB7) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 255

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +1

Query: 283 ITRGKGIVDSL---FQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKL 453
           I +GK + D+L   F  P  +G  +A+    +    G     F NT G +    A     
Sbjct: 61  IQKGKSLQDNLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQ 120

Query: 454 VVHLSKNFMTLPNIKIPLILGIWGGKGQG 540
              +++N M + ++K+P+I  I G  G G
Sbjct: 121 GEAIARNLMEMSDLKVPIIAIIIGEGGSG 149

>DPO3A_LACLA (Q9CI70) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1060

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
 Frame = +1

Query: 157  NYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGD 336
            N+H K +      + A +  D  R       LAY+++D    +       D +F A +G 
Sbjct: 807  NFHKKENILPLIQIGAFDYADSNRGK-----LAYNLADHANLLNYYS---DDIFMASSGG 858

Query: 337  GT--HEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNI 495
            G   HEA     E  S+   KYDF+  + G  + P  +  L      NF  L  +
Sbjct: 859  GFAYHEA-----EDYSE-TEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQL 907

>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107|
          Length = 1070

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 169 KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 327
           K  + +   +++ E++  K++TDK+  L   +SD+   I   K  V+S +  P
Sbjct: 688 KQGEESTGKLISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740

>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC|
           3.1.3.48) (Protein tyrosine phosphatase PTP-BL)
           (Protein-tyrosine phosphatase RIP) (protein tyrosine
           phosphatase DPZPTP) (PTP36)
          Length = 2453

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 259 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRK 393
           D S   +D  RGKG+            THEA LS   +V++GL K
Sbjct: 195 DRSQAIRDRLRGKGLPTGRSSTSDALDTHEAPLSQQTFVNKGLSK 239

>PRMA_LEGPL (Q5WZ79) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -3

Query: 498 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 334
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   LV A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISSPEALQNPVHLVIANILLAPLI 233

Query: 333 ARGRLEERVHDALPSGDVLLVVG 265
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>PRMA_LEGPA (Q5X7S8) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -3

Query: 498 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 334
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   L+ A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISTPEALQNPVHLIIANILLAPLI 233

Query: 333 ARGRLEERVHDALPSGDVLLVVG 265
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,660,494
Number of Sequences: 219361
Number of extensions: 1452339
Number of successful extensions: 4201
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 4112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4190
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)