ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal11o21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1049 bits (529), Expect = 0.0 Identities = 552/557 (99%), Gaps = 2/557 (0%) Strand = Plus / Plus Query: 4 ccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagtagatg 63 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 87 ccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag-agatg 144 Query: 64 gctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggg 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 gctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggg 204 Query: 124 aagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcc 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 aagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcc 264 Query: 184 aacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 aacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgg 324 Query: 244 aagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatc 303 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 aagggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatc 384 Query: 304 gtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcc 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 gtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcc 444 Query: 364 tacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttc 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 tacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttc 504 Query: 424 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 564 Query: 484 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 624 Query: 544 tcattccagtgtgagct 560 ||||||||||||||||| Sbjct: 625 tcattccagtgtgagct 641
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 952 bits (480), Expect = 0.0 Identities = 541/559 (96%), Gaps = 3/559 (0%) Strand = Plus / Plus Query: 2 caccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagtaga 61 ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| ||| Sbjct: 6 caccagcacagccgcgc--atccaccgctgctagcaaggtcgagcaagcagcacag-aga 62 Query: 62 tggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcg 121 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 63 tggctgctgccttctcctccaccgtcggtgccccggcttctacgccgaccaacttcctcg 122 Query: 122 ggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaagg 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 ggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaagg 182 Query: 182 ccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagt 241 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 183 ccaacaggttcacggtcatggcagcggaaaacatcgacgagaagaggaacaccgacaagt 242 Query: 242 ggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggca 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 ggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggca 302 Query: 302 tcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagct 361 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 303 tcgtggactccctcttccaggcgcccactggcgacggcacccacgaggccgtcctcagct 362 Query: 362 cctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggct 421 | |||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 363 catacgagtacgtcagccagggactcaagaagtacgacttcgacaacaccatgggaggct 422 Query: 422 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 481 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 423 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaagaacttcatga 482 Query: 482 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 542 Query: 542 aatcattccagtgtgagct 560 |||| |||||||||||||| Sbjct: 543 aatccttccagtgtgagct 561
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Plus Query: 96 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 156 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 216 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 276 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 335 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 336 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 396 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877 Query: 456 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 498 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5878 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920 Score = 319 bits (161), Expect = 5e-84 Identities = 281/321 (87%) Strand = Plus / Plus Query: 240 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 300 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 359 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 360 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 419 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 420 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 479 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178 Query: 480 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 539 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 3238 Query: 540 aaaatcattccagtgtgagct 560 || || |||||||||||||| Sbjct: 3239 caagtcgttccagtgtgagct 3259 Score = 159 bits (80), Expect = 1e-35 Identities = 94/96 (97%), Gaps = 2/96 (2%) Strand = Plus / Plus Query: 2 caccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagtaga 61 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 5305 caccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag-aga 5362 Query: 62 tggctgctgccttctcctccaccgtcggggctccgg 97 |||||||||||||||||||||||||||||||||||| Sbjct: 5363 tggctgctgccttctcctccaccgtcggggctccgg 5398 Score = 127 bits (64), Expect = 4e-26 Identities = 64/64 (100%) Strand = Plus / Plus Query: 497 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129 Query: 557 agct 560 |||| Sbjct: 6130 agct 6133
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 741 bits (374), Expect = 0.0 Identities = 383/386 (99%) Strand = Plus / Plus Query: 175 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 360 Query: 535 caaggaaaatcattccagtgtgagct 560 |||||||||||||||||||||||||| Sbjct: 361 caaggaaaatcattccagtgtgagct 386
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 464 bits (234), Expect = e-127 Identities = 303/326 (92%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 556 Query: 535 caaggaaaatcattccagtgtgagct 560 || || ||||| |||||||||||||| Sbjct: 557 caggggaaatccttccagtgtgagct 582 Score = 224 bits (113), Expect = 2e-55 Identities = 137/145 (94%) Strand = Plus / Plus Query: 59 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| Sbjct: 78 agatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagcttcc 137 Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178 |||| || |||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct: 138 tcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagcttca 197 Query: 179 aggccaacaggttcacagtcatggc 203 |||||||||||||||| |||||||| Sbjct: 198 aggccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 444 bits (224), Expect = e-121 Identities = 300/326 (92%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 546 Query: 535 caaggaaaatcattccagtgtgagct 560 || || ||||| |||||||||||||| Sbjct: 547 caggggaaatccttccagtgtgagct 572 Score = 218 bits (110), Expect = 1e-53 Identities = 136/145 (93%) Strand = Plus / Plus Query: 59 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118 ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||| Sbjct: 68 agatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagcttcc 127 Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178 |||| || |||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct: 128 tcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagcttca 187 Query: 179 aggccaacaggttcacagtcatggc 203 |||||||||||||||| |||||||| Sbjct: 188 aggccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 400 bits (202), Expect = e-108 Identities = 295/326 (90%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 503 Query: 535 caaggaaaatcattccagtgtgagct 560 || |||||||| |||||||||||||| Sbjct: 504 cagggaaaatccttccagtgtgagct 529 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 59 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 25 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84 Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 85 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144 Query: 179 aggccaacaggttca 193 | ||||||||||| Sbjct: 145 acatcaacaggttca 159
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 400 bits (202), Expect = e-108 Identities = 295/326 (90%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 540 Query: 535 caaggaaaatcattccagtgtgagct 560 || |||||||| |||||||||||||| Sbjct: 541 cagggaaaatccttccagtgtgagct 566 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 59 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 62 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121 Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181 Query: 179 aggccaacaggttca 193 | ||||||||||| Sbjct: 182 acatcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 400 bits (202), Expect = e-108 Identities = 295/326 (90%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 539 Query: 535 caaggaaaatcattccagtgtgagct 560 || |||||||| |||||||||||||| Sbjct: 540 cagggaaaatccttccagtgtgagct 565 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 59 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 179 aggccaacaggttca 193 | ||||||||||| Sbjct: 181 acatcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 400 bits (202), Expect = e-108 Identities = 295/326 (90%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 323 Query: 535 caaggaaaatcattccagtgtgagct 560 || |||||||| |||||||||||||| Sbjct: 324 cagggaaaatccttccagtgtgagct 349
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 400 bits (202), Expect = e-108 Identities = 295/326 (90%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 544 Query: 535 caaggaaaatcattccagtgtgagct 560 || |||||||| |||||||||||||| Sbjct: 545 cagggaaaatccttccagtgtgagct 570 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 59 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 66 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125 Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178 | ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185 Query: 179 aggccaacaggttca 193 | ||||||||||| Sbjct: 186 acatcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 400 bits (202), Expect = e-108 Identities = 295/326 (90%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 538 Query: 535 caaggaaaatcattccagtgtgagct 560 || |||||||| |||||||||||||| Sbjct: 539 cagggaaaatccttccagtgtgagct 564 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 59 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 60 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119 Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179 Query: 179 aggccaacaggttca 193 | ||||||||||| Sbjct: 180 acatcaacaggttca 194
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 392 bits (198), Expect = e-106 Identities = 294/326 (90%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 ||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||| ||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 511 Query: 535 caaggaaaatcattccagtgtgagct 560 || |||||||| |||||||||||||| Sbjct: 512 cagggaaaatccttccagtgtgagct 537 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 59 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 33 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92 Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 93 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152 Query: 179 aggccaacaggttca 193 | ||||||||||| Sbjct: 153 acatcaacaggttca 167
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 392 bits (198), Expect = e-106 Identities = 294/326 (90%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 ||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||| Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggcaagggt 551 Query: 535 caaggaaaatcattccagtgtgagct 560 || |||||||| |||||||||||||| Sbjct: 552 cagggaaaatccttccagtgtgagct 577 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 59 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 73 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132 Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192 Query: 179 aggccaacaggttca 193 | ||||||||||| Sbjct: 193 acatcaacaggttca 207
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 319 bits (161), Expect = 5e-84 Identities = 281/321 (87%) Strand = Plus / Plus Query: 240 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 300 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 359 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 360 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 419 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 420 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 479 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456 Query: 480 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 539 ||| || |||||||||||| |||| |||||| |||||||||||||||||||||| || || Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtatctggggaggcaagggacaggg 516 Query: 540 aaaatcattccagtgtgagct 560 || || |||||||| ||||| Sbjct: 517 caagtcgttccagtgcgagct 537 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 60 gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 119 ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| |||||| Sbjct: 25 gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84 Query: 120 cgggaagaagctcaagaagcagg 142 |||||||||| | |||||||||| Sbjct: 85 cgggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 319 bits (161), Expect = 5e-84 Identities = 281/321 (87%) Strand = Plus / Plus Query: 240 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 300 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 359 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 360 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 419 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 420 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 479 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609 Query: 480 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 539 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 669 Query: 540 aaaatcattccagtgtgagct 560 || || |||||||||||||| Sbjct: 670 caagtcgttccagtgtgagct 690
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 266 bits (134), Expect = 7e-68 Identities = 185/202 (91%) Strand = Plus / Plus Query: 359 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 418 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 419 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 478 ||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446 Query: 479 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaag 538 ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcagg 506 Query: 539 gaaaatcattccagtgtgagct 560 ||||||| |||||||||||||| Sbjct: 507 gaaaatccttccagtgtgagct 528 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 59 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 179 aggccaacaggttca 193 | ||||||||||| Sbjct: 181 acatcaacaggttca 195 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 295 aagggcatcgtggactcgctcttccaggc 323 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 246 bits (124), Expect = 7e-62 Identities = 157/168 (93%) Strand = Plus / Minus Query: 393 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 452 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 453 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 512 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316 Query: 513 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 560 |||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 109315 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagct 109268 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 355 ctcagctcctacgagtacgtcagccaggg 383 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 240 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 300 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 350 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 106 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 165 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 166 ggcaagagctccaaggccaacaggttca 193 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 59 agatggctgctgccttctcctccaccgtcggggctccgg 97 |||||||||||||||||||||||||||| || ||||||| Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 246 bits (124), Expect = 7e-62 Identities = 157/168 (93%) Strand = Plus / Minus Query: 393 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 452 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 453 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 512 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193 Query: 513 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 560 |||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 31192 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagct 31145 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 355 ctcagctcctacgagtacgtcagccaggg 383 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 240 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 300 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 350 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 106 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 165 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 166 ggcaagagctccaaggccaacaggttca 193 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 59 agatggctgctgccttctcctccaccgtcggggctccgg 97 |||||||||||||||||||||||||||| || ||||||| Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 246 bits (124), Expect = 7e-62 Identities = 157/168 (93%) Strand = Plus / Minus Query: 393 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 452 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 453 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 512 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455 Query: 513 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 560 |||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 28304454 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagct 28304407 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 355 ctcagctcctacgagtacgtcagccaggg 383 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 240 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 300 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 350 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 106 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 165 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 166 ggcaagagctccaaggccaacaggttca 193 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 59 agatggctgctgccttctcctccaccgtcggggctccgg 97 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 246 bits (124), Expect = 7e-62 Identities = 157/168 (93%) Strand = Plus / Minus Query: 393 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 452 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 453 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 512 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904 Query: 513 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 560 |||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 28286903 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagct 28286856 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 355 ctcagctcctacgagtacgtcagccaggg 383 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 240 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 300 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 350 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 106 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 165 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 166 ggcaagagctccaaggccaacaggttca 193 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 59 agatggctgctgccttctcctccaccgtcggggctccgg 97 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 210 bits (106), Expect = 4e-51 Identities = 271/326 (83%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 |||||||||||||| ||||||||| | || |||||| ||||||||||||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatctggggaggcaaaggc 512 Query: 535 caaggaaaatcattccagtgtgagct 560 || |||||||| ||||| || ||||| Sbjct: 513 cagggaaaatcgttccaatgcgagct 538 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 61 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 114 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 115 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 171 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 172 agctcca 178 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 196 bits (99), Expect = 5e-47 Identities = 240/287 (83%) Strand = Plus / Plus Query: 271 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 330 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 331 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 390 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354 Query: 391 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 450 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414 Query: 451 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 510 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474 Query: 511 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtga 557 |||||||||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 475 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtga 521
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 196 bits (99), Expect = 5e-47 Identities = 240/287 (83%) Strand = Plus / Plus Query: 271 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 330 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 331 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 390 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217 Query: 391 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 450 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277 Query: 451 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 510 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337 Query: 511 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtga 557 |||||||||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 338 ttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtga 384
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 188 bits (95), Expect = 1e-44 Identities = 239/287 (83%) Strand = Plus / Plus Query: 271 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 330 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 331 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 390 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247 Query: 391 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 450 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307 Query: 451 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 510 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367 Query: 511 ttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtga 557 |||||||||||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 368 ttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtga 414
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 172 bits (87), Expect = 8e-40 Identities = 265/326 (81%) Strand = Plus / Plus Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 295 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 354 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 355 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 414 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 415 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 474 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 475 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 534 |||||||||||||| ||||||||| | || |||||| |||||||| ||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgtgggaggcaaaggc 512 Query: 535 caaggaaaatcattccagtgtgagct 560 || |||||||| ||||| || ||||| Sbjct: 513 cagggaaaatcgttccaatgcgagct 538 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 61 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 114 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 115 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 171 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 172 agctcca 178 ||||||| Sbjct: 141 agctcca 147
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 168 bits (85), Expect = 1e-38 Identities = 169/197 (85%) Strand = Plus / Plus Query: 361 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 420 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 | |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575 Query: 541 aaatcattccagtgtga 557 ||||||||||||||||| Sbjct: 576 aaatcattccagtgtga 592
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 167 bits (84), Expect = 5e-38 Identities = 261/320 (81%) Strand = Plus / Plus Query: 241 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 300 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 301 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 360 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 361 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 420 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||| || || ||||||||||||||||||||||| || || |||| |||| |||| Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 ||||| || ||||| ||| | || || ||||||||||| ||||||||||| ||||||||| Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaagga 579 Query: 541 aaatcattccagtgtgagct 560 ||||| ||||| |||||||| Sbjct: 580 aaatctttccaatgtgagct 599
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 153 bits (77), Expect = 7e-34 Identities = 176/209 (84%) Strand = Plus / Plus Query: 352 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 411 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 412 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 471 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 531 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 532 ggtcaaggaaaatcattccagtgtgagct 560 |||||||| ||||| |||||||||||||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagct 704
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 153 bits (77), Expect = 7e-34 Identities = 176/209 (84%) Strand = Plus / Plus Query: 352 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 411 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 412 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 471 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 531 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 532 ggtcaaggaaaatcattccagtgtgagct 560 |||||||| ||||| |||||||||||||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagct 704
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 153 bits (77), Expect = 7e-34 Identities = 176/209 (84%) Strand = Plus / Plus Query: 352 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 411 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 412 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 471 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 531 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 532 ggtcaaggaaaatcattccagtgtgagct 560 |||||||| ||||| |||||||||||||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagct 733
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 153 bits (77), Expect = 7e-34 Identities = 176/209 (84%) Strand = Plus / Plus Query: 352 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 411 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 412 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 471 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 531 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 532 ggtcaaggaaaatcattccagtgtgagct 560 |||||||| ||||| |||||||||||||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagct 615
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 153 bits (77), Expect = 7e-34 Identities = 176/209 (84%) Strand = Plus / Plus Query: 352 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 411 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 412 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 471 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441 Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 531 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 501 Query: 532 ggtcaaggaaaatcattccagtgtgagct 560 |||||||| ||||| |||||||||||||| Sbjct: 502 ggtcaaggtaaatccttccagtgtgagct 530
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 153 bits (77), Expect = 7e-34 Identities = 176/209 (84%) Strand = Plus / Plus Query: 352 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 411 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 412 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 471 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 531 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 532 ggtcaaggaaaatcattccagtgtgagct 560 |||||||| ||||| |||||||||||||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagct 618
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 153 bits (77), Expect = 7e-34 Identities = 176/209 (84%) Strand = Plus / Plus Query: 352 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 411 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 412 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 471 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518 Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 531 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 578 Query: 532 ggtcaaggaaaatcattccagtgtgagct 560 |||||||| ||||| |||||||||||||| Sbjct: 579 ggtcaaggtaaatccttccagtgtgagct 607
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 153 bits (77), Expect = 7e-34 Identities = 176/209 (84%) Strand = Plus / Plus Query: 352 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 411 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 412 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 471 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 531 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 532 ggtcaaggaaaatcattccagtgtgagct 560 |||||||| ||||| |||||||||||||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagct 615
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 153 bits (77), Expect = 7e-34 Identities = 176/209 (84%) Strand = Plus / Plus Query: 352 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 411 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 412 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 471 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 531 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 532 ggtcaaggaaaatcattccagtgtgagct 560 |||||||| ||||| |||||||||||||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagct 618
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 153 bits (77), Expect = 7e-34 Identities = 176/209 (84%) Strand = Plus / Plus Query: 352 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 411 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 412 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 471 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 531 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 532 ggtcaaggaaaatcattccagtgtgagct 560 |||||||| ||||| |||||||||||||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagct 733
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 143 bits (72), Expect = 7e-31 Identities = 123/140 (87%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 | |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545 Query: 541 aaatcattccagtgtgagct 560 ||||| |||||||||||||| Sbjct: 546 aaatctttccagtgtgagct 565
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 141 bits (71), Expect = 3e-30 Identities = 125/143 (87%) Strand = Plus / Plus Query: 418 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 477 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 478 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 537 |||| |||||||||||||| | ||||||||||||||| | ||||||||||| |||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553 Query: 538 ggaaaatcattccagtgtgagct 560 || ||||||||||| |||||||| Sbjct: 554 ggtaaatcattccaatgtgagct 576
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 135 bits (68), Expect = 2e-28 Identities = 122/140 (87%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595 Query: 541 aaatcattccagtgtgagct 560 ||||| |||||||||||||| Sbjct: 596 aaatctttccagtgtgagct 615
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 133 bits (67), Expect = 7e-28 Identities = 121/139 (87%) Strand = Plus / Plus Query: 422 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 481 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 482 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 541 | |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| | Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749 Query: 542 aatcattccagtgtgagct 560 |||| ||||| |||||||| Sbjct: 750 aatccttccaatgtgagct 768
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 131 bits (66), Expect = 3e-27 Identities = 135/158 (85%) Strand = Plus / Plus Query: 403 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 462 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 463 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 522 || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| ||| Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375 Query: 523 ggaggcaagggtcaaggaaaatcattccagtgtgagct 560 |||||||| |||||||||||||| ||||| |||||||| Sbjct: 376 ggaggcaaaggtcaaggaaaatctttccaatgtgagct 413
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 127 bits (64), Expect = 4e-26 Identities = 121/140 (86%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 || |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592 Query: 541 aaatcattccagtgtgagct 560 ||||||||||| |||||||| Sbjct: 593 aaatcattccaatgtgagct 612
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 127 bits (64), Expect = 4e-26 Identities = 121/140 (86%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 ||| |||||||||||||| | || ||||| | |||||||||||||||||||| |||||| Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588 Query: 541 aaatcattccagtgtgagct 560 || || ||||| |||||||| Sbjct: 589 aagtctttccaatgtgagct 608 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 241 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 123 bits (62), Expect = 7e-25 Identities = 140/166 (84%) Strand = Plus / Plus Query: 392 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 451 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 452 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 511 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 512 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtga 557 ||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtga 596
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 123 bits (62), Expect = 7e-25 Identities = 140/166 (84%) Strand = Plus / Plus Query: 392 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 451 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 452 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 511 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 512 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtga 557 ||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtga 596
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 123 bits (62), Expect = 7e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 439 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 498 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 499 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 558 | || |||||| ||||||||||||||||||| || || |||||||| ||||| || ||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 141 Query: 559 ct 560 || Sbjct: 142 ct 143
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 123 bits (62), Expect = 7e-25 Identities = 119/138 (86%) Strand = Plus / Plus Query: 423 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 482 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 483 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 542 | |||| ||||||||| | || ||||| | ||||| ||||||||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275 Query: 543 atcattccagtgtgagct 560 || ||||| |||||||| Sbjct: 276 gtccttccaatgtgagct 293
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 123 bits (62), Expect = 7e-25 Identities = 116/134 (86%) Strand = Plus / Plus Query: 424 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 483 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 484 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 543 |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 206 Query: 544 tcattccagtgtga 557 || ||||| ||||| Sbjct: 207 tccttccaatgtga 220
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 123 bits (62), Expect = 7e-25 Identities = 134/158 (84%) Strand = Plus / Plus Query: 403 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 462 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 463 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 522 || ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| ||| Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376 Query: 523 ggaggcaagggtcaaggaaaatcattccagtgtgagct 560 |||||||| |||||||||||||| ||||| |||||||| Sbjct: 377 ggaggcaaaggtcaaggaaaatctttccaatgtgagct 414
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 123 bits (62), Expect = 7e-25 Identities = 175/210 (83%), Gaps = 2/210 (0%) Strand = Plus / Plus Query: 352 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 411 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 412 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 471 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510 Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttggg-tatctggggaggcaa 530 |||||| |||| ||||| ||||||||| | ||||| || ||||| | || |||||||||| Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttgggctctc-ggggaggcaa 569 Query: 531 gggtcaaggaaaatcattccagtgtgagct 560 |||||||| ||||| |||||||||||||| Sbjct: 570 aggtcaaggtaaatccttccagtgtgagct 599
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 121 bits (61), Expect = 3e-24 Identities = 142/169 (84%) Strand = Plus / Plus Query: 392 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 451 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 452 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 511 ||||||| || || |||| |||||||||||| |||||||||||||| | || ||||| Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555 Query: 512 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 560 | ||| |||||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 556 ttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagct 604
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 101 bits (51), Expect = 2e-18 Identities = 111/131 (84%) Strand = Plus / Plus Query: 430 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 489 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 490 aacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattc 549 ||||| ||| | || |||||||||||||| ||||||||||| ||||| || || || ||| Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtcagggcaagtctttc 604 Query: 550 cagtgtgagct 560 ||||| ||||| Sbjct: 605 cagtgcgagct 615 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 264 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 323 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 97.6 bits (49), Expect = 4e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 420 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 479 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 480 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 539 || | |||| ||||||||| | || || ||||||||||| ||||||||||| |||||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633 Query: 540 aaaatcattccagtgtgagct 560 ||||| ||||| |||||||| Sbjct: 634 taaatccttccaatgtgagct 654
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 79.8 bits (40), Expect = 9e-12 Identities = 58/64 (90%) Strand = Plus / Plus Query: 497 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 556 |||| ||||||||||||||| | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297 Query: 557 agct 560 |||| Sbjct: 2298 agct 2301 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 420 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 479 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 480 gaccctgcccaacatcaag 498 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 424 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 483 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 484 ctgcccaacatcaag 498 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 502 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 560 ||||| || |||||||| ||||||||||| |||||||| ||||| |||||||||||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagct 14675
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 424 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 483 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 484 ctgcccaacatcaag 498 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 502 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 560 ||||| || |||||||| ||||||||||| |||||||| ||||| |||||||||||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagct 2608
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 505 ctcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagct 560 ||||| ||||||||||||||||| || |||||||| ||||| |||||||||||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagct 241 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 481 ac 482 || Sbjct: 66 ac 67
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 418 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 477 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 478 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 537 ||| ||||||||| |||||| | || |||||| ||||||||||||| |||||||| || Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247 Query: 538 ggaaa 542 ||||| Sbjct: 1248 ggaaa 1252
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 496 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 555 ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || ||| Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482 Query: 556 gagct 560 ||||| Sbjct: 7481 gagct 7477
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 403 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 458 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 514 ggtatctggggaggcaagggtcaaggaaaatcattcca 551 |||||||||||||| || |||||||||||||| ||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatctttcca 83921
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 5e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 467 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 526 |||| ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| | Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465 Query: 527 gcaaggg 533 ||||||| Sbjct: 466 gcaaggg 472
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 514 ggtatctggggaggcaagggtcaaggaaaatcattcca 551 |||||||||||||| || |||||||||||||| ||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatctttcca 104896
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 472 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 531 |||||| ||||||| || ||||| ||| | || ||||| ||||| | |||||||| || Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581 Query: 532 ggtcaaggaaaatcattccagtgtga 557 ||||||||||| || ||||||||||| Sbjct: 582 ggtcaaggaaagtctttccagtgtga 607
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 483 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 266 ccgacgaccagcaggacatcacc 288 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 308 actcgctcttccaggcgcccac 329 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 gaagaagctcaagaagcaggtg 144 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>gb|AC093244.2| Homo sapiens chromosome 5 clone RP11-113I22, complete sequence Length = 85927 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 gtagatggctgctgccttctc 77 ||||||||||||||||||||| Sbjct: 19861 gtagatggctgctgccttctc 19881
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 529 aagggtcaaggaaaatcattccagtgtga 557 ||||||||||||||||| ||||| ||||| Sbjct: 1 aagggtcaaggaaaatctttccaatgtga 29
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 catggcagcggagaacatcg 217 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 262 atctccgacgaccagcaggacatc 285 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gcagcggagaacatcgacga 221 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 cccacgggcgacggcacccacgag 348 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 gcaagagctccaaggccaac 186 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ctgccttctcctccaccgtc 87 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 ccctgcccaacatcaagatc 501 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 catggcagcggagaacatcg 217 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 cccacgggcgacggcacccacgag 348 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ctgctgccttctcctccacc 84 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ctgctgccttctcctccacc 84 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ctgctgccttctcctccacc 84 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gaagaagctcaagaagcagg 142 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 ggcttctacatcgctcctgctttc 441 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 325 cccacgggcgacggcacccacgag 348 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccagagggaagggcatcgtg 306 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 gtccatctctccaaaaactt 476 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 gcaagagctccaaggccaac 186 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ccagagggaagggcatcgtg 306 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ccctgcccaacatcaagatc 501 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 cccacgggcgacggcacccacgag 348 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 caaggccaacaggttcacagtcat 200 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgatatctccgacgaccagc 277 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 ccctgcccaacatcaagatc 501 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 ggcttctacatcgctcctgctttc 441 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 caaggccaacaggttcacagtcat 200 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 aagaagctcaagaagcaggt 143 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 ccctgcccaacatcaagatc 501 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ccctgcccaacatcaagatc 501 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 cccacgggcgacggcacccacgag 348 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggctgctgccttctcctcc 81 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,579,504 Number of Sequences: 3902068 Number of extensions: 4579504 Number of successful extensions: 83487 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82960 Number of HSP's gapped (non-prelim): 513 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
