ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal12d20 |
|---|---|
| Clone Library Name | barley_pub |
>PAO_MAIZE (O64411) Polyamine oxidase precursor (EC 1.5.3.11)| Length = 500 Score = 186 bits (471), Expect = 2e-47 Identities = 84/107 (78%), Positives = 95/107 (88%) Frame = +3 Query: 3 QFFVYASSRRGYYGMWQSFEKEYPGANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNM 182 +FF+YASSRRGYYG+WQ FEK+YP ANVLLVTVTD ESRRIEQQ D T AE + VLR M Sbjct: 345 EFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKM 404 Query: 183 FPDRDVPDATDIYVPRWWSNRFFKGSYSNWPIGVNRYEYDQLRAPVG 323 FP +DVPDATDI VPRWWS+RF+KG++SNWP+GVNRYEYDQLRAPVG Sbjct: 405 FPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVG 451
>LSDA_DROME (Q9VW97) Possible lysine-specific histone demethylase 1 (EC| 1.-.-.-) Length = 890 Score = 54.3 bits (129), Expect = 7e-08 Identities = 27/79 (34%), Positives = 44/79 (55%) Frame = +3 Query: 84 VLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVPRWWSNRFFKGSY 263 VLL V + + +E D++ + + VL+N+F + VP + V RW S+ + +GSY Sbjct: 703 VLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSY 762 Query: 264 SNWPIGVNRYEYDQLRAPV 320 S +G + +YD L APV Sbjct: 763 SYVSVGSSGSDYDLLAAPV 781
>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (AOF2 protein) (BRAF35-HDAC complex protein BHC110) Length = 853 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/100 (25%), Positives = 47/100 (47%) Frame = +3 Query: 21 SSRRGYYGMWQSFEKEYPGANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRDV 200 +SR + W ++ A +LL V + +E D+V + + +L+ +F V Sbjct: 687 ASRGELFLFWNLYK-----APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAV 741 Query: 201 PDATDIYVPRWWSNRFFKGSYSNWPIGVNRYEYDQLRAPV 320 P + V RW ++ + +GSYS G + +YD + P+ Sbjct: 742 PQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPI 781
>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (BRAF35-HDAC complex protein BHC110) Length = 852 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/100 (25%), Positives = 47/100 (47%) Frame = +3 Query: 21 SSRRGYYGMWQSFEKEYPGANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRDV 200 +SR + W ++ A +LL V + +E D+V + + +L+ +F V Sbjct: 686 ASRGELFLFWNLYK-----APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAV 740 Query: 201 PDATDIYVPRWWSNRFFKGSYSNWPIGVNRYEYDQLRAPV 320 P + V RW ++ + +GSYS G + +YD + P+ Sbjct: 741 PQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPI 780
>PAOX_MOUSE (Q8C0L6) Peroxisomal N1-acetyl-spermine/spermidine oxidase (EC| 1.5.3.11) (Polyamine oxidase) Length = 503 Score = 34.7 bits (78), Expect = 0.061 Identities = 20/87 (22%), Positives = 39/87 (44%) Frame = +3 Query: 60 EKEYPGANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVPRWWS 239 + + ++VL + +ES +E D + VLR + + +P A + +W S Sbjct: 362 QPSFESSHVLCGFIAGLESEFMETLSDEEVLLSLTQVLRRVTGNPQLPAAKSVRRSQWHS 421 Query: 240 NRFFKGSYSNWPIGVNRYEYDQLRAPV 320 + +GSYS +G + D + P+ Sbjct: 422 APYTRGSYSYVAVGSTGDDLDLMAQPL 448
>SMOX_MOUSE (Q99K82) Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1)| (PAO-1) (PAOh1) Length = 555 Score = 33.9 bits (76), Expect = 0.10 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Frame = +3 Query: 57 FEKEYPG---ANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVP 227 F+ YP +VL + E+ +E+ D +LR + ++P I Sbjct: 411 FDVLYPPERYGHVLSGWICGEEALVMERCDDEAVAEICTEMLRQFTGNPNIPKPRRILRS 470 Query: 228 RWWSNRFFKGSYSNWPIGVNRYEYDQLRAPV 320 W SN +F+GSYS +G + + ++L P+ Sbjct: 471 AWGSNPYFRGSYSYTQVGSSGADVEKLAKPL 501
>SMOX_HUMAN (Q9NWM0) Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1)| (PAO-1) (PAOh1) Length = 555 Score = 33.9 bits (76), Expect = 0.10 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Frame = +3 Query: 57 FEKEYPG---ANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVP 227 F+ YP +VL + E+ +E+ D +LR + ++P I Sbjct: 411 FDVLYPPERYGHVLSGWICGEEALVMEKCDDEAVAEICTEMLRQFTGNPNIPKPRRILRS 470 Query: 228 RWWSNRFFKGSYSNWPIGVNRYEYDQLRAPV 320 W SN +F+GSYS +G + + ++L P+ Sbjct: 471 AWGSNPYFRGSYSYTQVGSSGADVEKLAKPL 501
>PAOX_HUMAN (Q6QHF9) Peroxisomal N1-acetyl-spermine/spermidine oxidase (EC| 1.5.3.11) (Polyamine oxidase) Length = 648 Score = 32.3 bits (72), Expect = 0.30 Identities = 21/84 (25%), Positives = 36/84 (42%) Frame = +3 Query: 69 YPGANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVPRWWSNRF 248 + +VL + +ES +E D + VLR + + +P + RW S + Sbjct: 510 FASVHVLCGFIAGLESEFMETLSDEEVLLCLTQVLRRVTGNPRLPAPKSVLRSRWHSAPY 569 Query: 249 FKGSYSNWPIGVNRYEYDQLRAPV 320 +GSYS +G + D L P+ Sbjct: 570 TRGSYSYVAVGSTGGDLDLLAQPL 593
>PAOX_BOVIN (Q865R1) Peroxisomal N1-acetyl-spermine/spermidine oxidase (EC| 1.5.3.11) (Polyamine oxidase) (Fragments) Length = 492 Score = 32.3 bits (72), Expect = 0.30 Identities = 20/84 (23%), Positives = 38/84 (45%) Frame = +3 Query: 69 YPGANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVPRWWSNRF 248 + ++VL + +ES +E D + VLR + + +P + W S + Sbjct: 354 FQASHVLCGFIAGLESEFMETLSDEDVLRSLTQVLRRVTGNPQLPAPRSMLRSCWHSAPY 413 Query: 249 FKGSYSNWPIGVNRYEYDQLRAPV 320 +GSYS +G + + D+L P+ Sbjct: 414 TRGSYSYVAVGSSGDDMDRLAQPL 437
>DBP_HUMAN (Q10586) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) (TAXREB302) Length = 325 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 4 SSSSTPAPGEATTGCGSRSRRSTPG 78 S + TPAP CGS S RS+PG Sbjct: 143 SPARTPAPSPGPGSCGSASPRSSPG 167
>CBP1_CANAL (P31225) Corticosteroid-binding protein| Length = 489 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/71 (22%), Positives = 30/71 (42%) Frame = +3 Query: 54 SFEKEYPGANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVPRW 233 +F + + G L++ + +E PD + + D +PD + V W Sbjct: 345 NFGRVHNGKASLVILTQAPLTNYLETHPDQAWQYYQPMLQKLSINDEPIPDPINTIVTDW 404 Query: 234 WSNRFFKGSYS 266 +N + +GSYS Sbjct: 405 TTNPYIRGSYS 415
>SYM_BACHD (Q9KGK8) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 660 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +3 Query: 63 KEYPGANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIY 221 K G NV+ +T TD ++IEQ+ AEA G+ F D V D++ Sbjct: 39 KRLRGYNVMYLTGTDEHGQKIEQK------AEAKGLTPKQFVDEIVSGIQDLW 85
>DBP_BOVIN (Q32PF6) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) Length = 325 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +1 Query: 16 TPAPGEATTGCGSRSRRSTPG 78 TPAP CGS S RS+PG Sbjct: 147 TPAPSPRPGSCGSASPRSSPG 167
>PCRA_BACSU (O34580) ATP-dependent DNA helicase pcrA (EC 3.6.1.-)| Length = 739 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/48 (29%), Positives = 27/48 (56%) Frame = +3 Query: 54 SFEKEYPGANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRD 197 SFEK+YP A+V+L+ ++RI + + V + +N++ + D Sbjct: 269 SFEKDYPNASVILLEQNYRSTKRILRAANEVIKNNSNRKPKNLWTEND 316
>HEM6_RHIME (Q92PD8) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)| (Coproporphyrinogen III oxidase, aerobic) (Coproporphyrinogenase) (Coprogen oxidase) Length = 303 Score = 28.1 bits (61), Expect = 5.7 Identities = 19/69 (27%), Positives = 28/69 (40%) Frame = +3 Query: 108 VESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVPRWWSNRFFKGSYSNWPIGVN 287 ++ RRI PD V A+ + N P D + W + +F + N P G Sbjct: 154 LDRRRIMTDPDTVLFHRAMEIACNRHP------VADHAKFKQWCDEYFYLKHRNEPRGTG 207 Query: 288 RYEYDQLRA 314 YD LR+ Sbjct: 208 GIFYDWLRS 216
>LSD1_CAEEL (Q9XWP6) Probable lysine-specific histone demethylase 1 (EC| 1.-.-.-) (Suppressor of presenilin 5) (P110b homolog) Length = 770 Score = 27.7 bits (60), Expect = 7.5 Identities = 21/97 (21%), Positives = 40/97 (41%) Frame = +3 Query: 30 RGYYGMWQSFEKEYPGANVLLVTVTDVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDA 209 RG +W S PG+ VL + E+ + + PD+V + A+ L+ F + Sbjct: 548 RGSMNIWSSV----PGSKVLCTYIVGEEA--MLELPDDVIIQNAMINLQKAFGNNCPRAP 601 Query: 210 TDIYVPRWWSNRFFKGSYSNWPIGVNRYEYDQLRAPV 320 ++ RW + GS + + +D + P+ Sbjct: 602 ISAHITRWHDDELAFGSGAFMSLRTETTSFDDVMEPL 638
>DBP_RAT (P16443) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) (D site albumin promoter-binding protein 1) Length = 325 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 4 SSSSTPAPGEATTGCGSRSRRSTPG 78 S + TPAP C S S RS+PG Sbjct: 143 SPARTPAPSPGPGSCSSSSPRSSPG 167
>DBP_MOUSE (Q60925) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) Length = 325 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 4 SSSSTPAPGEATTGCGSRSRRSTPG 78 S + TPAP C S S RS+PG Sbjct: 143 SPARTPAPSPGPGSCSSSSPRSSPG 167 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,148,183 Number of Sequences: 219361 Number of extensions: 507111 Number of successful extensions: 1998 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1942 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1997 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
