ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal12d20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ298132.1|HVU298132 Hordeum vulgare mRNA for polyamine oxid... 642 0.0
2emb|AJ304793.1|HVU304793 Hordeum vulgare bpao2 gene for flavin c... 611 e-172
3emb|AJ298131.1|HVU298131 Hordeum vulgare mRNA for polyamine oxid... 182 5e-43
4ref|XM_450669.1| Oryza sativa (japonica cultivar-group), mRNA 165 1e-37
5dbj|AK069392.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 1e-37
6emb|AJ002204.1|ZMJ002204 Zea mays mRNA for flavin containing pol... 157 3e-35
7gb|AY107888.1| Zea mays PCO061908 mRNA sequence 157 3e-35
8emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin c... 141 2e-30
9ref|XM_470573.1| Oryza sativa (japonica cultivar-group), predic... 139 6e-30
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 125 9e-26
11gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome... 125 9e-26
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 125 9e-26
13emb|AJ251568.1|ZMA251568 Zea mays PAO gene for flavin containing... 117 2e-23
14emb|AJ251018.1|ZMA251018 Zea mays pao gene for polyamine oxidase... 117 2e-23
15ref|XM_450667.1| Oryza sativa (japonica cultivar-group), mRNA 115 9e-23
16emb|AJ251019.1|ZMA251019 Zea mays pao gene for polyamine oxidase... 109 6e-21
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 109 6e-21
18dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic D... 109 6e-21
19dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic D... 109 6e-21
20emb|AL928639.5| Mouse DNA sequence from clone RP23-446O17 on chr... 42 1.1

>emb|AJ298132.1|HVU298132 Hordeum vulgare mRNA for polyamine oxidase (bpao2 gene)
          Length = 1700

 Score =  642 bits (324), Expect = 0.0
 Identities = 327/328 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    agcagttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 agcagttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcg 1173

                                                                        
Query: 61   agaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 agaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggc 1233

                                                                        
Query: 121  ggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaaca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 ggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaaca 1293

                                                                        
Query: 181  tgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtcca 240
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1294 tgttccccgaccgggacgtccccgacgccaccgatatctacgtgctgcgctggtggtcca 1353

                                                                        
Query: 241  accgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 accgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacg 1413

                                        
Query: 301  accagctccgggcgccggttggcgggcg 328
            ||||||||||||||||||||||||||||
Sbjct: 1414 accagctccgggcgccggttggcgggcg 1441



to top

>emb|AJ304793.1|HVU304793 Hordeum vulgare bpao2 gene for flavin containing polyamine oxidase,
            exons 1-8
          Length = 4217

 Score =  611 bits (308), Expect = e-172
 Identities = 311/312 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    agcagttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3379 agcagttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcg 3438

                                                                        
Query: 61   agaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3439 agaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggc 3498

                                                                        
Query: 121  ggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaaca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3499 ggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaaca 3558

                                                                        
Query: 181  tgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtcca 240
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3559 tgttccccgaccgggacgtccccgacgccaccgatatctacgtgctgcgctggtggtcca 3618

                                                                        
Query: 241  accgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3619 accgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacg 3678

                        
Query: 301  accagctccggg 312
            ||||||||||||
Sbjct: 3679 accagctccggg 3690



to top

>emb|AJ298131.1|HVU298131 Hordeum vulgare mRNA for polyamine oxidase (bpao1 gene)
          Length = 1583

 Score =  182 bits (92), Expect = 5e-43
 Identities = 260/316 (82%)
 Strand = Plus / Plus

                                                                        
Query: 4    agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63
            |||||||| ||||||| |||  ||||||||||||||||||  ||||||||  ||| ||| 
Sbjct: 1064 agttcttcctctacgcgagcagcaggagaggctactacggagtgtggcaggagtttgagg 1123

                                                                        
Query: 64   aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123
             | ||||||| |  |||||||| || ||||| || || || ||||  |||||| ||||||
Sbjct: 1124 cgcagtacccagacgccaacgttctcctggtcaccgtcaccgacgacgagtcgaggcgga 1183

                                                                        
Query: 124  tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183
            ||||||||||| | ||||||  ||||| |||||||  |||||  |||||| | | |||||
Sbjct: 1184 tcgagcagcagtcggacaaccagaccaaggcggagatcgtggaggtgctgaggagcatgt 1243

                                                                        
Query: 184  tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243
            |||||| |  ||||||||||||||| || || |||  |||||| || ||||||||| || 
Sbjct: 1244 tccccggcgaggacgtccccgacgcgacggacatcctcgtgccacggtggtggtccgaca 1303

                                                                        
Query: 244  gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303
            | |||| || |||| ||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1304 ggttctacaggggcaccttctccaactggcccatcggcgtcaaccgctacgaatacgacc 1363

                            
Query: 304  agctccgggcgccggt 319
            ||||| |||| |||||
Sbjct: 1364 agctcagggcaccggt 1379



to top

>ref|XM_450669.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1588

 Score =  165 bits (83), Expect = 1e-37
 Identities = 260/319 (81%)
 Strand = Plus / Plus

                                                                        
Query: 4    agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63
            |||||||| ||||||| ||| |||||||||||||||||||  | ||||||  ||| ||||
Sbjct: 1037 agttcttcctctacgcgagcaccaggagaggctactacggagtctggcaggagtttgaga 1096

                                                                        
Query: 64   aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123
            || | ||||| |  ||||| ||||| |||||||||||||| |||| ||||||| ||||||
Sbjct: 1097 agcaatacccggatgccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcgga 1156

                                                                        
Query: 124  tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183
            ||||||||||||| |||| |  ||||| ||| |||  | |||  ||  || | | |||||
Sbjct: 1157 tcgagcagcagccggacagccagaccaaggcagagatcatggaggttgtgaggagcatgt 1216

                                                                        
Query: 184  tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243
            |||| |||  ||||||||||||||||||||| |||  ||| ||| | ||||||||  || 
Sbjct: 1217 tccctgacgaggacgtccccgacgccaccgacatcctcgtcccgagatggtggtcggaca 1276

                                                                        
Query: 244  gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303
            | |||||| | |||  || |||||||||||||||||||||||  ||||||||  | ||||
Sbjct: 1277 ggttcttccaaggcagcttctccaactggcccatcggcgtcagtcgctacgaacatgacc 1336

                               
Query: 304  agctccgggcgccggttgg 322
            ||||| |||||||||||||
Sbjct: 1337 agctcagggcgccggttgg 1355



to top

>dbj|AK069392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014L10, full
            insert sequence
          Length = 1587

 Score =  165 bits (83), Expect = 1e-37
 Identities = 260/319 (81%)
 Strand = Plus / Plus

                                                                        
Query: 4    agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63
            |||||||| ||||||| ||| |||||||||||||||||||  | ||||||  ||| ||||
Sbjct: 1036 agttcttcctctacgcgagcaccaggagaggctactacggagtctggcaggagtttgaga 1095

                                                                        
Query: 64   aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123
            || | ||||| |  ||||| ||||| |||||||||||||| |||| ||||||| ||||||
Sbjct: 1096 agcaatacccggatgccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcgga 1155

                                                                        
Query: 124  tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183
            ||||||||||||| |||| |  ||||| ||| |||  | |||  ||  || | | |||||
Sbjct: 1156 tcgagcagcagccggacagccagaccaaggcagagatcatggaggttgtgaggagcatgt 1215

                                                                        
Query: 184  tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243
            |||| |||  ||||||||||||||||||||| |||  ||| ||| | ||||||||  || 
Sbjct: 1216 tccctgacgaggacgtccccgacgccaccgacatcctcgtcccgagatggtggtcggaca 1275

                                                                        
Query: 244  gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303
            | |||||| | |||  || |||||||||||||||||||||||  ||||||||  | ||||
Sbjct: 1276 ggttcttccaaggcagcttctccaactggcccatcggcgtcagtcgctacgaacatgacc 1335

                               
Query: 304  agctccgggcgccggttgg 322
            ||||| |||||||||||||
Sbjct: 1336 agctcagggcgccggttgg 1354



to top

>emb|AJ002204.1|ZMJ002204 Zea mays mRNA for flavin containing polyamine oxidase (PAO)
          Length = 1750

 Score =  157 bits (79), Expect = 3e-35
 Identities = 259/319 (81%)
 Strand = Plus / Plus

                                                                        
Query: 4    agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63
            |||||||| |||||||||||  ||||||||| ||||||||  ||||||||  ||||||||
Sbjct: 1103 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcaggagttcgaga 1162

                                                                        
Query: 64   aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123
            || ||||||| |  ||||| || || ||||| || ||||| |||| ||||||| |||| |
Sbjct: 1163 agcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtcgaggcgca 1222

                                                                        
Query: 124  tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183
            ||||||||||| | ||| |   ||||| |||||||  | ||   |||||||| || ||||
Sbjct: 1223 tcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcggaagatgt 1282

                                                                        
Query: 184  tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243
            |||||| |  ||||||||| ||||||||||| |||   || ||| | ||||||||| || 
Sbjct: 1283 tccccggcaaggacgtcccggacgccaccgacatccttgtcccgaggtggtggtccgaca 1342

                                                                        
Query: 244  gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303
            | |||| ||||||| ||| ||||||||||||  | ||||||||||||||||| |||||||
Sbjct: 1343 ggttctacaagggcaccttctccaactggccagttggcgtcaaccgctacgaatacgacc 1402

                               
Query: 304  agctccgggcgccggttgg 322
            ||||  |||| ||||||||
Sbjct: 1403 agcttagggcaccggttgg 1421



to top

>gb|AY107888.1| Zea mays PCO061908 mRNA sequence
          Length = 1895

 Score =  157 bits (79), Expect = 3e-35
 Identities = 259/319 (81%)
 Strand = Plus / Plus

                                                                        
Query: 4    agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63
            |||||||| |||||||||||  ||||||||| ||||||||  ||||||||  ||||||||
Sbjct: 1109 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcaggagttcgaga 1168

                                                                        
Query: 64   aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123
            || ||||||| |  ||||| || || ||||| || ||||| |||| ||||||| |||| |
Sbjct: 1169 agcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtcgaggcgca 1228

                                                                        
Query: 124  tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183
            ||||||||||| | ||| |   ||||| |||||||  | ||   |||||||| || ||||
Sbjct: 1229 tcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcggaagatgt 1288

                                                                        
Query: 184  tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243
            |||||| |  ||||||||| ||||||||||| |||   || ||| | ||||||||| || 
Sbjct: 1289 tccccggcaaggacgtcccggacgccaccgacatccttgtcccgaggtggtggtccgaca 1348

                                                                        
Query: 244  gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303
            | |||| ||||||| ||| ||||||||||||  | ||||||||||||||||| |||||||
Sbjct: 1349 ggttctacaagggcaccttctccaactggccagttggcgtcaaccgctacgaatacgacc 1408

                               
Query: 304  agctccgggcgccggttgg 322
            ||||  |||| ||||||||
Sbjct: 1409 agcttagggcaccggttgg 1427



to top

>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase,
            exons 1-9
          Length = 2942

 Score =  141 bits (71), Expect = 2e-30
 Identities = 191/231 (82%)
 Strand = Plus / Plus

                                                                        
Query: 78   gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137
            |||||||| || ||||| || || || ||||  |||||| ||||||||||||||||| | 
Sbjct: 2260 gccaacgttctcctggtcaccgtcaccgacgacgagtcgaggcggatcgagcagcagtcg 2319

                                                                        
Query: 138  gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 197
            ||||||  ||||| |||||||  |||||  |||||| | | ||||||||||| |  ||||
Sbjct: 2320 gacaaccagaccaaggcggagatcgtggaggtgctgaggagcatgttccccggcgaggac 2379

                                                                        
Query: 198  gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 257
            ||||||||||| || || |||   ||||| || ||||||||| || | |||| || ||||
Sbjct: 2380 gtccccgacgcgacggacatcctagtgccacggtggtggtccgacaggttctacaggggc 2439

                                                               
Query: 258  tcctactccaactggcccatcggcgtcaaccgctacgagtacgaccagctc 308
             ||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2440 accttctccaactggcccatcggcgtcaaccgctacgaatacgaccagctc 2490



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 4    agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 53
            |||||||| ||||||| |||  ||||||||||||||||||  ||||||||
Sbjct: 2102 agttcttcctctacgcgagcagcaggagaggctactacggagtgtggcag 2151



to top

>ref|XM_470573.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1044

 Score =  139 bits (70), Expect = 6e-30
 Identities = 250/310 (80%)
 Strand = Plus / Plus

                                                                       
Query: 4   agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63
           |||||||| ||||||| ||| |||||||||| ||||| || || ||||||  ||||||||
Sbjct: 575 agttcttcctctacgcgagcaccaggagaggttactatggaatatggcaggagttcgaga 634

                                                                       
Query: 64  aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123
           |  | ||||| |   |||| || || || || ||||| || |||  ||||||| ||||||
Sbjct: 635 aacaatacccagattccaatgttcttcttgtcacggtcaccgacaaggagtcgaggcgga 694

                                                                       
Query: 124 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183
           ||||||||||| | ||||||  ||||| ||| |||  | |||  |||||| | |||||||
Sbjct: 695 tcgagcagcagtcggacaaccagaccaaggcagagatcatggaggtgctgaggaacatgt 754

                                                                       
Query: 184 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243
           |||| |||| ||||||||| |||||||| || |||  ||| ||  | |||||||| ||| 
Sbjct: 755 tccctgaccaggacgtccctgacgccactgacatcctcgtcccaagatggtggtcaaaca 814

                                                                       
Query: 244 gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303
           | |||| ||||||| ||| ||||||||||||||| ||||||||||||||||| || ||||
Sbjct: 815 ggttctacaagggcaccttctccaactggcccattggcgtcaaccgctacgaatatgacc 874

                     
Query: 304 agctccgggc 313
           ||||| ||||
Sbjct: 875 agctcagggc 884



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  125 bits (63), Expect = 9e-26
 Identities = 165/199 (82%)
 Strand = Plus / Plus

                                                                           
Query: 110     ggagtcgcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgt 169
               ||||||| ||||||||||||||||| | ||||||  ||||| ||| |||  | |||  ||
Sbjct: 4847852 ggagtcgaggcggatcgagcagcagtcggacaaccagaccaaggcagagatcatggaggt 4847911

                                                                           
Query: 170     gctgcgcaacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcg 229
               |||| | ||||||||||| |||| ||||||||| |||||||| || |||  ||| ||  |
Sbjct: 4847912 gctgaggaacatgttccctgaccaggacgtccctgacgccactgacatcctcgtcccaag 4847971

                                                                           
Query: 230     ctggtggtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccg 289
                |||||||| ||| | |||| ||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 4847972 atggtggtcaaacaggttctacaagggcaccttctccaactggcccattggcgtcaaccg 4848031

                                  
Query: 290     ctacgagtacgaccagctc 308
               |||||| || |||||||||
Sbjct: 4848032 ctacgaatatgaccagctc 4848050



to top

>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16,
              complete sequence
          Length = 159092

 Score =  125 bits (63), Expect = 9e-26
 Identities = 165/199 (82%)
 Strand = Plus / Minus

                                                                          
Query: 110    ggagtcgcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgt 169
              ||||||| ||||||||||||||||| | ||||||  ||||| ||| |||  | |||  ||
Sbjct: 147695 ggagtcgaggcggatcgagcagcagtcggacaaccagaccaaggcagagatcatggaggt 147636

                                                                          
Query: 170    gctgcgcaacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcg 229
              |||| | ||||||||||| |||| ||||||||| |||||||| || |||  ||| ||  |
Sbjct: 147635 gctgaggaacatgttccctgaccaggacgtccctgacgccactgacatcctcgtcccaag 147576

                                                                          
Query: 230    ctggtggtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccg 289
               |||||||| ||| | |||| ||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 147575 atggtggtcaaacaggttctacaagggcaccttctccaactggcccattggcgtcaaccg 147516

                                 
Query: 290    ctacgagtacgaccagctc 308
              |||||| || |||||||||
Sbjct: 147515 ctacgaatatgaccagctc 147497



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  125 bits (63), Expect = 9e-26
 Identities = 165/199 (82%)
 Strand = Plus / Plus

                                                                           
Query: 110     ggagtcgcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgt 169
               ||||||| ||||||||||||||||| | ||||||  ||||| ||| |||  | |||  ||
Sbjct: 4847067 ggagtcgaggcggatcgagcagcagtcggacaaccagaccaaggcagagatcatggaggt 4847126

                                                                           
Query: 170     gctgcgcaacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcg 229
               |||| | ||||||||||| |||| ||||||||| |||||||| || |||  ||| ||  |
Sbjct: 4847127 gctgaggaacatgttccctgaccaggacgtccctgacgccactgacatcctcgtcccaag 4847186

                                                                           
Query: 230     ctggtggtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccg 289
                |||||||| ||| | |||| ||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 4847187 atggtggtcaaacaggttctacaagggcaccttctccaactggcccattggcgtcaaccg 4847246

                                  
Query: 290     ctacgagtacgaccagctc 308
               |||||| || |||||||||
Sbjct: 4847247 ctacgaatatgaccagctc 4847265



to top

>emb|AJ251568.1|ZMA251568 Zea mays PAO gene for flavin containing polyamine oxidase, exons 1-8
          Length = 4096

 Score =  117 bits (59), Expect = 2e-23
 Identities = 215/267 (80%)
 Strand = Plus / Plus

                                                                        
Query: 56   gttcgagaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtc 115
            |||||||||| ||||||| |  ||||| || || ||||| || ||||| |||| ||||||
Sbjct: 3561 gttcgagaagcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtc 3620

                                                                        
Query: 116  gcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcg 175
            | |||| |||||||||||| | ||| |   ||||| |||||||  | ||   ||||||||
Sbjct: 3621 gaggcgcatcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcg 3680

                                                                        
Query: 176  caacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtg 235
             || |||||||||| |  ||||||||| ||||||||||| |||   || ||| | |||||
Sbjct: 3681 gaagatgttccccggcaaggacgtcccggacgccaccgacatccttgtcccgaggtggtg 3740

                                                                        
Query: 236  gtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacga 295
            |||| || | |||| ||||||| ||| ||||||||||||  | |||||||||||||||||
Sbjct: 3741 gtccgacaggttctacaagggcaccttctccaactggccagttggcgtcaaccgctacga 3800

                                       
Query: 296  gtacgaccagctccgggcgccggttgg 322
             |||||||||||  |||| ||||||||
Sbjct: 3801 atacgaccagcttagggcaccggttgg 3827



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 4    agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 53
            |||||||| |||||||||||  ||||||||| ||||||||  ||||||||
Sbjct: 3422 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcag 3471



to top

>emb|AJ251018.1|ZMA251018 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO2
          Length = 4344

 Score =  117 bits (59), Expect = 2e-23
 Identities = 215/267 (80%)
 Strand = Plus / Plus

                                                                        
Query: 56   gttcgagaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtc 115
            |||||||||| ||||||| |  ||||| || || ||||| || ||||| |||| ||||||
Sbjct: 3808 gttcgagaagcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtc 3867

                                                                        
Query: 116  gcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcg 175
            | |||| |||||||||||| | ||| |   ||||| |||||||  | ||   ||||||||
Sbjct: 3868 gaggcgcatcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcg 3927

                                                                        
Query: 176  caacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtg 235
             || |||||||||| |  ||||||||| ||||||||||| |||   || ||| | |||||
Sbjct: 3928 gaagatgttccccggcaaggacgtcccggacgccaccgacatccttgtcccgagatggtg 3987

                                                                        
Query: 236  gtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacga 295
            |||| || | |||| ||||||| ||| ||||||||||||  | |||||||||||||||||
Sbjct: 3988 gtccgacaggttctacaagggcaccttctccaactggccagttggcgtcaaccgctacga 4047

                                       
Query: 296  gtacgaccagctccgggcgccggttgg 322
             |||||||||||  |||| ||||||||
Sbjct: 4048 atacgaccagcttagggcaccggttgg 4074



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 4    agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 53
            |||||||| |||||||||||  ||||||||| ||||||||  ||||||||
Sbjct: 3651 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcag 3700



to top

>ref|XM_450667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1473

 Score =  115 bits (58), Expect = 9e-23
 Identities = 118/138 (85%)
 Strand = Plus / Plus

                                                                        
Query: 4    agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63
            |||||||| ||||||| ||| |||||||||||||||||||  | ||||||  ||| ||||
Sbjct: 1004 agttcttcctctacgcgagcaccaggagaggctactacggagtctggcaggagtttgaga 1063

                                                                        
Query: 64   aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123
            || | ||||| |  ||||| ||||| |||||||||||||| |||| ||||||| ||||||
Sbjct: 1064 agcaatacccggatgccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcgga 1123

                              
Query: 124  tcgagcagcagcccgaca 141
            ||||||||||||| ||||
Sbjct: 1124 tcgagcagcagccggaca 1141



 Score =  111 bits (56), Expect = 1e-21
 Identities = 122/144 (84%)
 Strand = Plus / Plus

                                                                        
Query: 179  catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 238
            ||||||||| |||  ||| ||||||||||||||||| |||  ||| ||| | ||||||||
Sbjct: 1179 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 1238

                                                                        
Query: 239  caaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagta 298
            | || | ||||||  ||||  || |||||||||||||||||||||||  |||||||||||
Sbjct: 1239 cgacaggttcttccggggcagcttctccaactggcccatcggcgtcagtcgctacgagta 1298

                                    
Query: 299  cgaccagctccgggcgccggttgg 322
             ||||||||| |||||||||||||
Sbjct: 1299 tgaccagctcagggcgccggttgg 1322



to top

>emb|AJ251019.1|ZMA251019 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO3
          Length = 3384

 Score =  109 bits (55), Expect = 6e-21
 Identities = 214/267 (80%)
 Strand = Plus / Plus

                                                                        
Query: 56   gttcgagaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtc 115
            |||||||||| ||||||| |  ||||| || || ||||| || ||||| |||| ||||||
Sbjct: 2849 gttcgagaagcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtc 2908

                                                                        
Query: 116  gcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcg 175
            | |||| |||||||||||| | ||| |   ||||| |||||||  | ||   ||||||||
Sbjct: 2909 gaggcgcatcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcg 2968

                                                                        
Query: 176  caacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtg 235
             || |||||||||| |  ||||||||| ||||||||||| |||   || ||| | |||||
Sbjct: 2969 gaagatgttccccggcaaggacgtcccagacgccaccgacatccttgtcccgaggtggtg 3028

                                                                        
Query: 236  gtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacga 295
            |||| || | |||| ||||||| ||| ||| ||||||||  | |||||||||||||||||
Sbjct: 3029 gtccgacaggttctacaagggcaccttctctaactggccagttggcgtcaaccgctacga 3088

                                       
Query: 296  gtacgaccagctccgggcgccggttgg 322
             |||||||||||  |||| ||||||||
Sbjct: 3089 atacgaccagcttagggcaccggttgg 3115



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 4    agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 53
            |||||||| |||||||||||  ||||||||| ||||||||  ||||||||
Sbjct: 2696 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcag 2745



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  109 bits (55), Expect = 6e-21
 Identities = 187/231 (80%)
 Strand = Plus / Minus

                                                                            
Query: 78       gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137
                ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| 
Sbjct: 12113606 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 12113547

                                                                            
Query: 138      gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 197
                |||| |  ||||| ||| |||  | |||  ||  || | | ||||||||| |||  ||||
Sbjct: 12113546 gacagccagaccaaggcagagatcatggaggttgtgaggagcatgttccctgacgaggac 12113487

                                                                            
Query: 198      gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 257
                ||||||||||||||||| |||  ||| ||| | ||||||||  || | |||||| | |||
Sbjct: 12113486 gtccccgacgccaccgacatcctcgtcccgagatggtggtcggacaggttcttccaaggc 12113427

                                                                   
Query: 258      tcctactccaactggcccatcggcgtcaaccgctacgagtacgaccagctc 308
                  || |||||||||||||||||||||||  ||||||||  | |||||||||
Sbjct: 12113426 agcttctccaactggcccatcggcgtcagtcgctacgaacatgaccagctc 12113376



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 109/130 (83%)
 Strand = Plus / Minus

                                                                            
Query: 179      catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 238
                ||||||||| |||  ||| ||||||||||||||||| |||  ||| ||| | ||||||||
Sbjct: 12093111 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 12093052

                                                                            
Query: 239      caaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagta 298
                | || | ||||||  ||||  || |||||||||||||||||||||||  |||||||||||
Sbjct: 12093051 cgacaggttcttccggggcagcttctccaactggcccatcggcgtcagtcgctacgagta 12092992

                          
Query: 299      cgaccagctc 308
                 |||||||||
Sbjct: 12092991 tgaccagctc 12092982



 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 78       gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137
                ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| 
Sbjct: 12093212 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 12093153

                    
Query: 138      gaca 141
                ||||
Sbjct: 12093152 gaca 12093149



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 4        agttcttcgtctacgccagctccaggagaggctactacgg 43
                |||||||| ||||||| ||| |||||||||||||||||||
Sbjct: 12113757 agttcttcctctacgcgagcaccaggagaggctactacgg 12113718



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 4        agttcttcgtctacgccagctccaggagaggctactacgg 43
                |||||||| ||||||| ||| |||||||||||||||||||
Sbjct: 12093363 agttcttcctctacgcgagcaccaggagaggctactacgg 12093324



to top

>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1759_F09
          Length = 149501

 Score =  109 bits (55), Expect = 6e-21
 Identities = 187/231 (80%)
 Strand = Plus / Minus

                                                                         
Query: 78    gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137
             ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| 
Sbjct: 25065 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 25006

                                                                         
Query: 138   gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 197
             |||| |  ||||| ||| |||  | |||  ||  || | | ||||||||| |||  ||||
Sbjct: 25005 gacagccagaccaaggcagagatcatggaggttgtgaggagcatgttccctgacgaggac 24946

                                                                         
Query: 198   gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 257
             ||||||||||||||||| |||  ||| ||| | ||||||||  || | |||||| | |||
Sbjct: 24945 gtccccgacgccaccgacatcctcgtcccgagatggtggtcggacaggttcttccaaggc 24886

                                                                
Query: 258   tcctactccaactggcccatcggcgtcaaccgctacgagtacgaccagctc 308
               || |||||||||||||||||||||||  ||||||||  | |||||||||
Sbjct: 24885 agcttctccaactggcccatcggcgtcagtcgctacgaacatgaccagctc 24835



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 109/130 (83%)
 Strand = Plus / Minus

                                                                        
Query: 179  catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 238
            ||||||||| |||  ||| ||||||||||||||||| |||  ||| ||| | ||||||||
Sbjct: 4570 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 4511

                                                                        
Query: 239  caaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagta 298
            | || | ||||||  ||||  || |||||||||||||||||||||||  |||||||||||
Sbjct: 4510 cgacaggttcttccggggcagcttctccaactggcccatcggcgtcagtcgctacgagta 4451

                      
Query: 299  cgaccagctc 308
             |||||||||
Sbjct: 4450 tgaccagctc 4441



 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                        
Query: 78   gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137
            ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| 
Sbjct: 4671 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 4612

                
Query: 138  gaca 141
            ||||
Sbjct: 4611 gaca 4608



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 4     agttcttcgtctacgccagctccaggagaggctactacgg 43
             |||||||| ||||||| ||| |||||||||||||||||||
Sbjct: 25216 agttcttcctctacgcgagcaccaggagaggctactacgg 25177



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 4    agttcttcgtctacgccagctccaggagaggctactacgg 43
            |||||||| ||||||| ||| |||||||||||||||||||
Sbjct: 4822 agttcttcctctacgcgagcaccaggagaggctactacgg 4783



to top

>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0564H06
          Length = 146823

 Score =  109 bits (55), Expect = 6e-21
 Identities = 187/231 (80%)
 Strand = Plus / Minus

                                                                         
Query: 78    gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137
             ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| 
Sbjct: 47985 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 47926

                                                                         
Query: 138   gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 197
             |||| |  ||||| ||| |||  | |||  ||  || | | ||||||||| |||  ||||
Sbjct: 47925 gacagccagaccaaggcagagatcatggaggttgtgaggagcatgttccctgacgaggac 47866

                                                                         
Query: 198   gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 257
             ||||||||||||||||| |||  ||| ||| | ||||||||  || | |||||| | |||
Sbjct: 47865 gtccccgacgccaccgacatcctcgtcccgagatggtggtcggacaggttcttccaaggc 47806

                                                                
Query: 258   tcctactccaactggcccatcggcgtcaaccgctacgagtacgaccagctc 308
               || |||||||||||||||||||||||  ||||||||  | |||||||||
Sbjct: 47805 agcttctccaactggcccatcggcgtcagtcgctacgaacatgaccagctc 47755



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 109/130 (83%)
 Strand = Plus / Minus

                                                                         
Query: 179   catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 238
             ||||||||| |||  ||| ||||||||||||||||| |||  ||| ||| | ||||||||
Sbjct: 27490 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 27431

                                                                         
Query: 239   caaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagta 298
             | || | ||||||  ||||  || |||||||||||||||||||||||  |||||||||||
Sbjct: 27430 cgacaggttcttccggggcagcttctccaactggcccatcggcgtcagtcgctacgagta 27371

                       
Query: 299   cgaccagctc 308
              |||||||||
Sbjct: 27370 tgaccagctc 27361



 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                         
Query: 78    gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137
             ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| 
Sbjct: 27591 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 27532

                 
Query: 138   gaca 141
             ||||
Sbjct: 27531 gaca 27528



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 4     agttcttcgtctacgccagctccaggagaggctactacgg 43
             |||||||| ||||||| ||| |||||||||||||||||||
Sbjct: 48136 agttcttcctctacgcgagcaccaggagaggctactacgg 48097



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 4     agttcttcgtctacgccagctccaggagaggctactacgg 43
             |||||||| ||||||| ||| |||||||||||||||||||
Sbjct: 27742 agttcttcctctacgcgagcaccaggagaggctactacgg 27703



to top

>emb|AL928639.5| Mouse DNA sequence from clone RP23-446O17 on chromosome 2, complete
             sequence
          Length = 177843

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   gggctcctactccaactggcc 274
             |||||||||||||||||||||
Sbjct: 67356 gggctcctactccaactggcc 67336


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,619,838
Number of Sequences: 3902068
Number of extensions: 1619838
Number of successful extensions: 34117
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34000
Number of HSP's gapped (non-prelim): 98
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top