| Clone Name | baal12d20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ298132.1|HVU298132 Hordeum vulgare mRNA for polyamine oxidase (bpao2 gene) Length = 1700 Score = 642 bits (324), Expect = 0.0 Identities = 327/328 (99%) Strand = Plus / Plus Query: 1 agcagttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1114 agcagttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcg 1173 Query: 61 agaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1174 agaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggc 1233 Query: 121 ggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1234 ggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaaca 1293 Query: 181 tgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtcca 240 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1294 tgttccccgaccgggacgtccccgacgccaccgatatctacgtgctgcgctggtggtcca 1353 Query: 241 accgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1354 accgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacg 1413 Query: 301 accagctccgggcgccggttggcgggcg 328 |||||||||||||||||||||||||||| Sbjct: 1414 accagctccgggcgccggttggcgggcg 1441
>emb|AJ304793.1|HVU304793 Hordeum vulgare bpao2 gene for flavin containing polyamine oxidase, exons 1-8 Length = 4217 Score = 611 bits (308), Expect = e-172 Identities = 311/312 (99%) Strand = Plus / Plus Query: 1 agcagttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3379 agcagttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcg 3438 Query: 61 agaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3439 agaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggc 3498 Query: 121 ggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3499 ggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaaca 3558 Query: 181 tgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtcca 240 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 3559 tgttccccgaccgggacgtccccgacgccaccgatatctacgtgctgcgctggtggtcca 3618 Query: 241 accgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3619 accgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacg 3678 Query: 301 accagctccggg 312 |||||||||||| Sbjct: 3679 accagctccggg 3690
>emb|AJ298131.1|HVU298131 Hordeum vulgare mRNA for polyamine oxidase (bpao1 gene) Length = 1583 Score = 182 bits (92), Expect = 5e-43 Identities = 260/316 (82%) Strand = Plus / Plus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63 |||||||| ||||||| ||| |||||||||||||||||| |||||||| ||| ||| Sbjct: 1064 agttcttcctctacgcgagcagcaggagaggctactacggagtgtggcaggagtttgagg 1123 Query: 64 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123 | ||||||| | |||||||| || ||||| || || || |||| |||||| |||||| Sbjct: 1124 cgcagtacccagacgccaacgttctcctggtcaccgtcaccgacgacgagtcgaggcgga 1183 Query: 124 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183 ||||||||||| | |||||| ||||| ||||||| ||||| |||||| | | ||||| Sbjct: 1184 tcgagcagcagtcggacaaccagaccaaggcggagatcgtggaggtgctgaggagcatgt 1243 Query: 184 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243 |||||| | ||||||||||||||| || || ||| |||||| || ||||||||| || Sbjct: 1244 tccccggcgaggacgtccccgacgcgacggacatcctcgtgccacggtggtggtccgaca 1303 Query: 244 gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303 | |||| || |||| ||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1304 ggttctacaggggcaccttctccaactggcccatcggcgtcaaccgctacgaatacgacc 1363 Query: 304 agctccgggcgccggt 319 ||||| |||| ||||| Sbjct: 1364 agctcagggcaccggt 1379
>ref|XM_450669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1588 Score = 165 bits (83), Expect = 1e-37 Identities = 260/319 (81%) Strand = Plus / Plus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63 |||||||| ||||||| ||| ||||||||||||||||||| | |||||| ||| |||| Sbjct: 1037 agttcttcctctacgcgagcaccaggagaggctactacggagtctggcaggagtttgaga 1096 Query: 64 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123 || | ||||| | ||||| ||||| |||||||||||||| |||| ||||||| |||||| Sbjct: 1097 agcaatacccggatgccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcgga 1156 Query: 124 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183 ||||||||||||| |||| | ||||| ||| ||| | ||| || || | | ||||| Sbjct: 1157 tcgagcagcagccggacagccagaccaaggcagagatcatggaggttgtgaggagcatgt 1216 Query: 184 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243 |||| ||| ||||||||||||||||||||| ||| ||| ||| | |||||||| || Sbjct: 1217 tccctgacgaggacgtccccgacgccaccgacatcctcgtcccgagatggtggtcggaca 1276 Query: 244 gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303 | |||||| | ||| || ||||||||||||||||||||||| |||||||| | |||| Sbjct: 1277 ggttcttccaaggcagcttctccaactggcccatcggcgtcagtcgctacgaacatgacc 1336 Query: 304 agctccgggcgccggttgg 322 ||||| ||||||||||||| Sbjct: 1337 agctcagggcgccggttgg 1355
>dbj|AK069392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014L10, full insert sequence Length = 1587 Score = 165 bits (83), Expect = 1e-37 Identities = 260/319 (81%) Strand = Plus / Plus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63 |||||||| ||||||| ||| ||||||||||||||||||| | |||||| ||| |||| Sbjct: 1036 agttcttcctctacgcgagcaccaggagaggctactacggagtctggcaggagtttgaga 1095 Query: 64 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123 || | ||||| | ||||| ||||| |||||||||||||| |||| ||||||| |||||| Sbjct: 1096 agcaatacccggatgccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcgga 1155 Query: 124 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183 ||||||||||||| |||| | ||||| ||| ||| | ||| || || | | ||||| Sbjct: 1156 tcgagcagcagccggacagccagaccaaggcagagatcatggaggttgtgaggagcatgt 1215 Query: 184 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243 |||| ||| ||||||||||||||||||||| ||| ||| ||| | |||||||| || Sbjct: 1216 tccctgacgaggacgtccccgacgccaccgacatcctcgtcccgagatggtggtcggaca 1275 Query: 244 gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303 | |||||| | ||| || ||||||||||||||||||||||| |||||||| | |||| Sbjct: 1276 ggttcttccaaggcagcttctccaactggcccatcggcgtcagtcgctacgaacatgacc 1335 Query: 304 agctccgggcgccggttgg 322 ||||| ||||||||||||| Sbjct: 1336 agctcagggcgccggttgg 1354
>emb|AJ002204.1|ZMJ002204 Zea mays mRNA for flavin containing polyamine oxidase (PAO) Length = 1750 Score = 157 bits (79), Expect = 3e-35 Identities = 259/319 (81%) Strand = Plus / Plus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63 |||||||| ||||||||||| ||||||||| |||||||| |||||||| |||||||| Sbjct: 1103 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcaggagttcgaga 1162 Query: 64 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123 || ||||||| | ||||| || || ||||| || ||||| |||| ||||||| |||| | Sbjct: 1163 agcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtcgaggcgca 1222 Query: 124 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183 ||||||||||| | ||| | ||||| ||||||| | || |||||||| || |||| Sbjct: 1223 tcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcggaagatgt 1282 Query: 184 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243 |||||| | ||||||||| ||||||||||| ||| || ||| | ||||||||| || Sbjct: 1283 tccccggcaaggacgtcccggacgccaccgacatccttgtcccgaggtggtggtccgaca 1342 Query: 244 gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303 | |||| ||||||| ||| |||||||||||| | ||||||||||||||||| ||||||| Sbjct: 1343 ggttctacaagggcaccttctccaactggccagttggcgtcaaccgctacgaatacgacc 1402 Query: 304 agctccgggcgccggttgg 322 |||| |||| |||||||| Sbjct: 1403 agcttagggcaccggttgg 1421
>gb|AY107888.1| Zea mays PCO061908 mRNA sequence Length = 1895 Score = 157 bits (79), Expect = 3e-35 Identities = 259/319 (81%) Strand = Plus / Plus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63 |||||||| ||||||||||| ||||||||| |||||||| |||||||| |||||||| Sbjct: 1109 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcaggagttcgaga 1168 Query: 64 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123 || ||||||| | ||||| || || ||||| || ||||| |||| ||||||| |||| | Sbjct: 1169 agcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtcgaggcgca 1228 Query: 124 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183 ||||||||||| | ||| | ||||| ||||||| | || |||||||| || |||| Sbjct: 1229 tcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcggaagatgt 1288 Query: 184 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243 |||||| | ||||||||| ||||||||||| ||| || ||| | ||||||||| || Sbjct: 1289 tccccggcaaggacgtcccggacgccaccgacatccttgtcccgaggtggtggtccgaca 1348 Query: 244 gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303 | |||| ||||||| ||| |||||||||||| | ||||||||||||||||| ||||||| Sbjct: 1349 ggttctacaagggcaccttctccaactggccagttggcgtcaaccgctacgaatacgacc 1408 Query: 304 agctccgggcgccggttgg 322 |||| |||| |||||||| Sbjct: 1409 agcttagggcaccggttgg 1427
>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase, exons 1-9 Length = 2942 Score = 141 bits (71), Expect = 2e-30 Identities = 191/231 (82%) Strand = Plus / Plus Query: 78 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137 |||||||| || ||||| || || || |||| |||||| ||||||||||||||||| | Sbjct: 2260 gccaacgttctcctggtcaccgtcaccgacgacgagtcgaggcggatcgagcagcagtcg 2319 Query: 138 gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 197 |||||| ||||| ||||||| ||||| |||||| | | ||||||||||| | |||| Sbjct: 2320 gacaaccagaccaaggcggagatcgtggaggtgctgaggagcatgttccccggcgaggac 2379 Query: 198 gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 257 ||||||||||| || || ||| ||||| || ||||||||| || | |||| || |||| Sbjct: 2380 gtccccgacgcgacggacatcctagtgccacggtggtggtccgacaggttctacaggggc 2439 Query: 258 tcctactccaactggcccatcggcgtcaaccgctacgagtacgaccagctc 308 ||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2440 accttctccaactggcccatcggcgtcaaccgctacgaatacgaccagctc 2490 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 53 |||||||| ||||||| ||| |||||||||||||||||| |||||||| Sbjct: 2102 agttcttcctctacgcgagcagcaggagaggctactacggagtgtggcag 2151
>ref|XM_470573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 139 bits (70), Expect = 6e-30 Identities = 250/310 (80%) Strand = Plus / Plus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63 |||||||| ||||||| ||| |||||||||| ||||| || || |||||| |||||||| Sbjct: 575 agttcttcctctacgcgagcaccaggagaggttactatggaatatggcaggagttcgaga 634 Query: 64 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123 | | ||||| | |||| || || || || ||||| || ||| ||||||| |||||| Sbjct: 635 aacaatacccagattccaatgttcttcttgtcacggtcaccgacaaggagtcgaggcgga 694 Query: 124 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 183 ||||||||||| | |||||| ||||| ||| ||| | ||| |||||| | ||||||| Sbjct: 695 tcgagcagcagtcggacaaccagaccaaggcagagatcatggaggtgctgaggaacatgt 754 Query: 184 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 243 |||| |||| ||||||||| |||||||| || ||| ||| || | |||||||| ||| Sbjct: 755 tccctgaccaggacgtccctgacgccactgacatcctcgtcccaagatggtggtcaaaca 814 Query: 244 gattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagtacgacc 303 | |||| ||||||| ||| ||||||||||||||| ||||||||||||||||| || |||| Sbjct: 815 ggttctacaagggcaccttctccaactggcccattggcgtcaaccgctacgaatatgacc 874 Query: 304 agctccgggc 313 ||||| |||| Sbjct: 875 agctcagggc 884
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 125 bits (63), Expect = 9e-26 Identities = 165/199 (82%) Strand = Plus / Plus Query: 110 ggagtcgcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgt 169 ||||||| ||||||||||||||||| | |||||| ||||| ||| ||| | ||| || Sbjct: 4847852 ggagtcgaggcggatcgagcagcagtcggacaaccagaccaaggcagagatcatggaggt 4847911 Query: 170 gctgcgcaacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcg 229 |||| | ||||||||||| |||| ||||||||| |||||||| || ||| ||| || | Sbjct: 4847912 gctgaggaacatgttccctgaccaggacgtccctgacgccactgacatcctcgtcccaag 4847971 Query: 230 ctggtggtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccg 289 |||||||| ||| | |||| ||||||| ||| ||||||||||||||| ||||||||||| Sbjct: 4847972 atggtggtcaaacaggttctacaagggcaccttctccaactggcccattggcgtcaaccg 4848031 Query: 290 ctacgagtacgaccagctc 308 |||||| || ||||||||| Sbjct: 4848032 ctacgaatatgaccagctc 4848050
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 125 bits (63), Expect = 9e-26 Identities = 165/199 (82%) Strand = Plus / Minus Query: 110 ggagtcgcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgt 169 ||||||| ||||||||||||||||| | |||||| ||||| ||| ||| | ||| || Sbjct: 147695 ggagtcgaggcggatcgagcagcagtcggacaaccagaccaaggcagagatcatggaggt 147636 Query: 170 gctgcgcaacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcg 229 |||| | ||||||||||| |||| ||||||||| |||||||| || ||| ||| || | Sbjct: 147635 gctgaggaacatgttccctgaccaggacgtccctgacgccactgacatcctcgtcccaag 147576 Query: 230 ctggtggtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccg 289 |||||||| ||| | |||| ||||||| ||| ||||||||||||||| ||||||||||| Sbjct: 147575 atggtggtcaaacaggttctacaagggcaccttctccaactggcccattggcgtcaaccg 147516 Query: 290 ctacgagtacgaccagctc 308 |||||| || ||||||||| Sbjct: 147515 ctacgaatatgaccagctc 147497
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 125 bits (63), Expect = 9e-26 Identities = 165/199 (82%) Strand = Plus / Plus Query: 110 ggagtcgcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgt 169 ||||||| ||||||||||||||||| | |||||| ||||| ||| ||| | ||| || Sbjct: 4847067 ggagtcgaggcggatcgagcagcagtcggacaaccagaccaaggcagagatcatggaggt 4847126 Query: 170 gctgcgcaacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcg 229 |||| | ||||||||||| |||| ||||||||| |||||||| || ||| ||| || | Sbjct: 4847127 gctgaggaacatgttccctgaccaggacgtccctgacgccactgacatcctcgtcccaag 4847186 Query: 230 ctggtggtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccg 289 |||||||| ||| | |||| ||||||| ||| ||||||||||||||| ||||||||||| Sbjct: 4847187 atggtggtcaaacaggttctacaagggcaccttctccaactggcccattggcgtcaaccg 4847246 Query: 290 ctacgagtacgaccagctc 308 |||||| || ||||||||| Sbjct: 4847247 ctacgaatatgaccagctc 4847265
>emb|AJ251568.1|ZMA251568 Zea mays PAO gene for flavin containing polyamine oxidase, exons 1-8 Length = 4096 Score = 117 bits (59), Expect = 2e-23 Identities = 215/267 (80%) Strand = Plus / Plus Query: 56 gttcgagaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtc 115 |||||||||| ||||||| | ||||| || || ||||| || ||||| |||| |||||| Sbjct: 3561 gttcgagaagcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtc 3620 Query: 116 gcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcg 175 | |||| |||||||||||| | ||| | ||||| ||||||| | || |||||||| Sbjct: 3621 gaggcgcatcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcg 3680 Query: 176 caacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtg 235 || |||||||||| | ||||||||| ||||||||||| ||| || ||| | ||||| Sbjct: 3681 gaagatgttccccggcaaggacgtcccggacgccaccgacatccttgtcccgaggtggtg 3740 Query: 236 gtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacga 295 |||| || | |||| ||||||| ||| |||||||||||| | ||||||||||||||||| Sbjct: 3741 gtccgacaggttctacaagggcaccttctccaactggccagttggcgtcaaccgctacga 3800 Query: 296 gtacgaccagctccgggcgccggttgg 322 ||||||||||| |||| |||||||| Sbjct: 3801 atacgaccagcttagggcaccggttgg 3827 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 53 |||||||| ||||||||||| ||||||||| |||||||| |||||||| Sbjct: 3422 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcag 3471
>emb|AJ251018.1|ZMA251018 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO2 Length = 4344 Score = 117 bits (59), Expect = 2e-23 Identities = 215/267 (80%) Strand = Plus / Plus Query: 56 gttcgagaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtc 115 |||||||||| ||||||| | ||||| || || ||||| || ||||| |||| |||||| Sbjct: 3808 gttcgagaagcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtc 3867 Query: 116 gcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcg 175 | |||| |||||||||||| | ||| | ||||| ||||||| | || |||||||| Sbjct: 3868 gaggcgcatcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcg 3927 Query: 176 caacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtg 235 || |||||||||| | ||||||||| ||||||||||| ||| || ||| | ||||| Sbjct: 3928 gaagatgttccccggcaaggacgtcccggacgccaccgacatccttgtcccgagatggtg 3987 Query: 236 gtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacga 295 |||| || | |||| ||||||| ||| |||||||||||| | ||||||||||||||||| Sbjct: 3988 gtccgacaggttctacaagggcaccttctccaactggccagttggcgtcaaccgctacga 4047 Query: 296 gtacgaccagctccgggcgccggttgg 322 ||||||||||| |||| |||||||| Sbjct: 4048 atacgaccagcttagggcaccggttgg 4074 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 53 |||||||| ||||||||||| ||||||||| |||||||| |||||||| Sbjct: 3651 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcag 3700
>ref|XM_450667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 115 bits (58), Expect = 9e-23 Identities = 118/138 (85%) Strand = Plus / Plus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 63 |||||||| ||||||| ||| ||||||||||||||||||| | |||||| ||| |||| Sbjct: 1004 agttcttcctctacgcgagcaccaggagaggctactacggagtctggcaggagtttgaga 1063 Query: 64 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 123 || | ||||| | ||||| ||||| |||||||||||||| |||| ||||||| |||||| Sbjct: 1064 agcaatacccggatgccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcgga 1123 Query: 124 tcgagcagcagcccgaca 141 ||||||||||||| |||| Sbjct: 1124 tcgagcagcagccggaca 1141 Score = 111 bits (56), Expect = 1e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 179 catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 238 ||||||||| ||| ||| ||||||||||||||||| ||| ||| ||| | |||||||| Sbjct: 1179 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 1238 Query: 239 caaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagta 298 | || | |||||| |||| || ||||||||||||||||||||||| ||||||||||| Sbjct: 1239 cgacaggttcttccggggcagcttctccaactggcccatcggcgtcagtcgctacgagta 1298 Query: 299 cgaccagctccgggcgccggttgg 322 ||||||||| ||||||||||||| Sbjct: 1299 tgaccagctcagggcgccggttgg 1322
>emb|AJ251019.1|ZMA251019 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO3 Length = 3384 Score = 109 bits (55), Expect = 6e-21 Identities = 214/267 (80%) Strand = Plus / Plus Query: 56 gttcgagaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtc 115 |||||||||| ||||||| | ||||| || || ||||| || ||||| |||| |||||| Sbjct: 2849 gttcgagaagcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtc 2908 Query: 116 gcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcg 175 | |||| |||||||||||| | ||| | ||||| ||||||| | || |||||||| Sbjct: 2909 gaggcgcatcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcg 2968 Query: 176 caacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtg 235 || |||||||||| | ||||||||| ||||||||||| ||| || ||| | ||||| Sbjct: 2969 gaagatgttccccggcaaggacgtcccagacgccaccgacatccttgtcccgaggtggtg 3028 Query: 236 gtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacga 295 |||| || | |||| ||||||| ||| ||| |||||||| | ||||||||||||||||| Sbjct: 3029 gtccgacaggttctacaagggcaccttctctaactggccagttggcgtcaaccgctacga 3088 Query: 296 gtacgaccagctccgggcgccggttgg 322 ||||||||||| |||| |||||||| Sbjct: 3089 atacgaccagcttagggcaccggttgg 3115 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 53 |||||||| ||||||||||| ||||||||| |||||||| |||||||| Sbjct: 2696 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcag 2745
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 109 bits (55), Expect = 6e-21 Identities = 187/231 (80%) Strand = Plus / Minus Query: 78 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 12113606 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 12113547 Query: 138 gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 197 |||| | ||||| ||| ||| | ||| || || | | ||||||||| ||| |||| Sbjct: 12113546 gacagccagaccaaggcagagatcatggaggttgtgaggagcatgttccctgacgaggac 12113487 Query: 198 gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 257 ||||||||||||||||| ||| ||| ||| | |||||||| || | |||||| | ||| Sbjct: 12113486 gtccccgacgccaccgacatcctcgtcccgagatggtggtcggacaggttcttccaaggc 12113427 Query: 258 tcctactccaactggcccatcggcgtcaaccgctacgagtacgaccagctc 308 || ||||||||||||||||||||||| |||||||| | ||||||||| Sbjct: 12113426 agcttctccaactggcccatcggcgtcagtcgctacgaacatgaccagctc 12113376 Score = 91.7 bits (46), Expect = 1e-15 Identities = 109/130 (83%) Strand = Plus / Minus Query: 179 catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 238 ||||||||| ||| ||| ||||||||||||||||| ||| ||| ||| | |||||||| Sbjct: 12093111 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 12093052 Query: 239 caaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagta 298 | || | |||||| |||| || ||||||||||||||||||||||| ||||||||||| Sbjct: 12093051 cgacaggttcttccggggcagcttctccaactggcccatcggcgtcagtcgctacgagta 12092992 Query: 299 cgaccagctc 308 ||||||||| Sbjct: 12092991 tgaccagctc 12092982 Score = 79.8 bits (40), Expect = 5e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 78 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 12093212 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 12093153 Query: 138 gaca 141 |||| Sbjct: 12093152 gaca 12093149 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgg 43 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 12113757 agttcttcctctacgcgagcaccaggagaggctactacgg 12113718 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgg 43 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 12093363 agttcttcctctacgcgagcaccaggagaggctactacgg 12093324
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 109 bits (55), Expect = 6e-21 Identities = 187/231 (80%) Strand = Plus / Minus Query: 78 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 25065 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 25006 Query: 138 gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 197 |||| | ||||| ||| ||| | ||| || || | | ||||||||| ||| |||| Sbjct: 25005 gacagccagaccaaggcagagatcatggaggttgtgaggagcatgttccctgacgaggac 24946 Query: 198 gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 257 ||||||||||||||||| ||| ||| ||| | |||||||| || | |||||| | ||| Sbjct: 24945 gtccccgacgccaccgacatcctcgtcccgagatggtggtcggacaggttcttccaaggc 24886 Query: 258 tcctactccaactggcccatcggcgtcaaccgctacgagtacgaccagctc 308 || ||||||||||||||||||||||| |||||||| | ||||||||| Sbjct: 24885 agcttctccaactggcccatcggcgtcagtcgctacgaacatgaccagctc 24835 Score = 91.7 bits (46), Expect = 1e-15 Identities = 109/130 (83%) Strand = Plus / Minus Query: 179 catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 238 ||||||||| ||| ||| ||||||||||||||||| ||| ||| ||| | |||||||| Sbjct: 4570 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 4511 Query: 239 caaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagta 298 | || | |||||| |||| || ||||||||||||||||||||||| ||||||||||| Sbjct: 4510 cgacaggttcttccggggcagcttctccaactggcccatcggcgtcagtcgctacgagta 4451 Query: 299 cgaccagctc 308 ||||||||| Sbjct: 4450 tgaccagctc 4441 Score = 79.8 bits (40), Expect = 5e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 78 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 4671 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 4612 Query: 138 gaca 141 |||| Sbjct: 4611 gaca 4608 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgg 43 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 25216 agttcttcctctacgcgagcaccaggagaggctactacgg 25177 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgg 43 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 4822 agttcttcctctacgcgagcaccaggagaggctactacgg 4783
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 109 bits (55), Expect = 6e-21 Identities = 187/231 (80%) Strand = Plus / Minus Query: 78 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 47985 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 47926 Query: 138 gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 197 |||| | ||||| ||| ||| | ||| || || | | ||||||||| ||| |||| Sbjct: 47925 gacagccagaccaaggcagagatcatggaggttgtgaggagcatgttccctgacgaggac 47866 Query: 198 gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 257 ||||||||||||||||| ||| ||| ||| | |||||||| || | |||||| | ||| Sbjct: 47865 gtccccgacgccaccgacatcctcgtcccgagatggtggtcggacaggttcttccaaggc 47806 Query: 258 tcctactccaactggcccatcggcgtcaaccgctacgagtacgaccagctc 308 || ||||||||||||||||||||||| |||||||| | ||||||||| Sbjct: 47805 agcttctccaactggcccatcggcgtcagtcgctacgaacatgaccagctc 47755 Score = 91.7 bits (46), Expect = 1e-15 Identities = 109/130 (83%) Strand = Plus / Minus Query: 179 catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 238 ||||||||| ||| ||| ||||||||||||||||| ||| ||| ||| | |||||||| Sbjct: 27490 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 27431 Query: 239 caaccgattcttcaagggctcctactccaactggcccatcggcgtcaaccgctacgagta 298 | || | |||||| |||| || ||||||||||||||||||||||| ||||||||||| Sbjct: 27430 cgacaggttcttccggggcagcttctccaactggcccatcggcgtcagtcgctacgagta 27371 Query: 299 cgaccagctc 308 ||||||||| Sbjct: 27370 tgaccagctc 27361 Score = 79.8 bits (40), Expect = 5e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 78 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 137 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 27591 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 27532 Query: 138 gaca 141 |||| Sbjct: 27531 gaca 27528 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgg 43 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 48136 agttcttcctctacgcgagcaccaggagaggctactacgg 48097 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 4 agttcttcgtctacgccagctccaggagaggctactacgg 43 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 27742 agttcttcctctacgcgagcaccaggagaggctactacgg 27703
>emb|AL928639.5| Mouse DNA sequence from clone RP23-446O17 on chromosome 2, complete sequence Length = 177843 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 gggctcctactccaactggcc 274 ||||||||||||||||||||| Sbjct: 67356 gggctcctactccaactggcc 67336 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,619,838 Number of Sequences: 3902068 Number of extensions: 1619838 Number of successful extensions: 34117 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34000 Number of HSP's gapped (non-prelim): 98 length of query: 328 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 306 effective length of database: 17,147,199,772 effective search space: 5247043130232 effective search space used: 5247043130232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)