ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal12d16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GATA2_XENLA (P23770) GATA-binding factor 2 (GATA-2) (Transcripti... 32 0.33
2GATA2_RAT (Q924Y4) Endothelial transcription factor GATA-2 (GATA... 31 0.95
3GATA2_MOUSE (O09100) Endothelial transcription factor GATA-2 (GA... 31 0.95
4GATA2_HUMAN (P23769) Endothelial transcription factor GATA-2 (GA... 30 1.2
5SEC1_YEAST (P30619) Protein transport protein SEC1 30 1.6
6MPP6_MOUSE (Q9JLB0) MAGUK p55 subfamily member 6 (Protein associ... 28 6.2

>GATA2_XENLA (P23770) GATA-binding factor 2 (GATA-2) (Transcription factor|
           xGATA-2)
          Length = 452

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 247 RIRGPGFCSEHR-RSPS*GRVISIPW*LGTGYRR*EAKISHHHRHWTIKSPFGKSVSPKA 71
           R+ G   C  H   SP       +PW L +G     A  +HHH  WT+ SPFGK+    A
Sbjct: 78  RLTGSQMCRPHLLHSPG------LPW-LESGKTALSA--AHHHNPWTV-SPFGKAPLHPA 127

Query: 70  LRAGGI 53
            R G +
Sbjct: 128 ARGGSL 133



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>GATA2_RAT (Q924Y4) Endothelial transcription factor GATA-2 (GATA-binding|
           protein 2)
          Length = 480

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 247 RIRGPGFCSEHR-RSPS*GRVISIPW*LGTGYRR*EAKISHHHRHWTIKSPFGKS-VSPK 74
           R+ G   C  H   SP       +PW L  G     A  +HHH  WT+ SPF K+ + P 
Sbjct: 78  RLTGGQMCRPHLLHSPG------LPW-LDGGKAALSAAAAHHHSPWTV-SPFSKTPLHPS 129

Query: 73  ALRAGG 56
           A  A G
Sbjct: 130 AAGAPG 135



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>GATA2_MOUSE (O09100) Endothelial transcription factor GATA-2 (GATA-binding|
           protein 2)
          Length = 480

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 247 RIRGPGFCSEHR-RSPS*GRVISIPW*LGTGYRR*EAKISHHHRHWTIKSPFGKS-VSPK 74
           R+ G   C  H   SP       +PW L  G     A  +HHH  WT+ SPF K+ + P 
Sbjct: 78  RLTGGQMCRPHLLHSPG------LPW-LDGGKAALSAAAAHHHSPWTV-SPFSKTPLHPS 129

Query: 73  ALRAGG 56
           A  A G
Sbjct: 130 AAGAPG 135



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>GATA2_HUMAN (P23769) Endothelial transcription factor GATA-2 (GATA-binding|
           protein 2)
          Length = 480

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -1

Query: 247 RIRGPGFCSEHR-RSPS*GRVISIPW*LGTGYRR*EAKISHHHRHWTIKSPFGKS-VSPK 74
           R+ G   C  H   SP       +PW L  G     A  +HHH  WT+ SPF K+ + P 
Sbjct: 78  RLTGGQMCRPHLLHSPG------LPW-LDGGKAALSAAAAHHHNPWTV-SPFSKTPLHPS 129

Query: 73  ALRAGG 56
           A  AGG
Sbjct: 130 A--AGG 133



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>SEC1_YEAST (P30619) Protein transport protein SEC1|
          Length = 724

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -1

Query: 136 ISHHHRHWTIKSPFGKSVSPKALRAGGIKHQIPEKTKKGSAEQR 5
           +SH H      SP   + SPKA  AG +K + PEK KK S   R
Sbjct: 673 VSHVHLKSQDNSPKSGTSSPKA--AGSLKSEPPEKEKKRSKFSR 714



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>MPP6_MOUSE (Q9JLB0) MAGUK p55 subfamily member 6 (Protein associated with|
           Lin-7 2) (Dlgh4 protein) (P55T protein)
          Length = 553

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
 Frame = -3

Query: 200 LRKSHFHTLVAWHWI*TLRS*DQPPSSP------LDNQKPL 96
           L++ HF +L+  H I   +  D PPSSP      L+NQ P+
Sbjct: 84  LKEPHFQSLLEAHDIVASKCYDSPPSSPEMNIPSLNNQLPV 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,542,522
Number of Sequences: 219361
Number of extensions: 706413
Number of successful extensions: 1708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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