ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal11o14 |
|---|---|
| Clone Library Name | barley_pub |
>AP4S1_HUMAN (Q9Y587) AP-4 complex subunit sigma-1 (Adapter-related protein| complex 4 sigma-1 subunit) (Sigma subunit of AP-4) (AP-4 adapter complex sigma subunit) Length = 144 Score = 181 bits (460), Expect = 1e-45 Identities = 78/139 (56%), Positives = 118/139 (84%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F L+VNKQGQTRL++YYEH+ +++R LE E+++ CL+R+++QCSF+E++++K++YR+YA Sbjct: 4 FFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQYA 63 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 +LF +VGV++ ENE+AI EFIH VE +D +F V ELDIMF+L+KVH +L+EMV+NGCI Sbjct: 64 ALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGCI 123 Query: 444 VETSKQNILAPIQLMEKTS 500 VET++ ILAP+ +++K S Sbjct: 124 VETNRARILAPLLILDKMS 142
>AP4S1_MOUSE (Q9WVL1) AP-4 complex subunit sigma-1 (Adapter-related protein| complex 4 sigma-1 subunit) (Sigma subunit of AP-4) (AP-4 adapter complex sigma subunit) Length = 144 Score = 178 bits (451), Expect = 1e-44 Identities = 78/139 (56%), Positives = 116/139 (83%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F L+VNKQGQTRL++YYEH+ +++R LE E+ + CL+R+ +QCSF+E++++K++YR+YA Sbjct: 4 FFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQYA 63 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 +LF +VGV++ ENE+AI EFIH VE +D +F V ELDIMF+L+KVH +L+EMV+NGCI Sbjct: 64 ALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNGCI 123 Query: 444 VETSKQNILAPIQLMEKTS 500 VET++ ILAP+ +++K S Sbjct: 124 VETNRARILAPLLILDKLS 142
>AP1S2_HUMAN (P56377) AP-1 complex subunit sigma-2 (Adapter-related protein| complex 1 sigma-1B subunit) (Sigma-adaptin 1B) (Adaptor protein complex AP-1 sigma-1B subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1B subunit) (Clathrin assembly protein complex Length = 157 Score = 135 bits (339), Expect = 1e-31 Identities = 62/133 (46%), Positives = 98/133 (73%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F+LL ++QG+ RL ++Y LS E++ + E+V+ LAR + CSF+E R+ K+VY+RYA Sbjct: 3 FMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYA 62 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 SL+F +++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E ++ G + Sbjct: 63 SLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEV 122 Query: 444 VETSKQNILAPIQ 482 ETSK+N+L I+ Sbjct: 123 QETSKKNVLKAIE 135
>AP1S2_MOUSE (Q9DB50) AP-1 complex subunit sigma-2 (Adapter-related protein| complex 1 sigma-1B subunit) (Sigma-adaptin 1B) (Adaptor protein complex AP-1 sigma-1B subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1B subunit) (Clathrin assembly protein complex Length = 160 Score = 135 bits (339), Expect = 1e-31 Identities = 62/133 (46%), Positives = 98/133 (73%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F+LL ++QG+ RL ++Y LS E++ + E+V+ LAR + CSF+E R+ K+VY+RYA Sbjct: 3 FMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYA 62 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 SL+F +++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E ++ G + Sbjct: 63 SLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEV 122 Query: 444 VETSKQNILAPIQ 482 ETSK+N+L I+ Sbjct: 123 QETSKKNVLKAIE 135
>AP2S_NEUCR (Q7SAQ1) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 134 bits (336), Expect = 2e-31 Identities = 70/138 (50%), Positives = 98/138 (71%), Gaps = 1/138 (0%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYRRY 260 F+L+ N+QG+TRLA++Y S +E+ L+GEI R R + Q +FVE RN+KVVYRRY Sbjct: 4 FILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVYRRY 63 Query: 261 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 440 A LFF VD ++NELA LE IH VE +D FGNVCELD++F+ KV+ +L+E+ + G Sbjct: 64 AGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFLAGE 123 Query: 441 IVETSKQNILAPIQLMEK 494 I ETSKQ +L ++ ++K Sbjct: 124 IEETSKQVVLTRLEHLDK 141
>AP2S_GIBZE (Q4ICG5) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 131 bits (330), Expect = 1e-30 Identities = 67/138 (48%), Positives = 97/138 (70%), Gaps = 1/138 (0%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYRRY 260 F+L+ N+QG+TRLA++Y S +++ L+GE+ R R + Q +FVE RN K+VYRRY Sbjct: 4 FILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVYRRY 63 Query: 261 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 440 A LFF VD ++NELA LE IH VE +D FGNVCELD++F+ KV+ +L+E+ + G Sbjct: 64 AGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFLAGE 123 Query: 441 IVETSKQNILAPIQLMEK 494 I ETSKQ +L ++ ++K Sbjct: 124 IEETSKQVVLTRLEHLDK 141
>AP1S1_MOUSE (P61967) AP-1 complex subunit sigma-1A (Adapter-related protein| complex 1 sigma-1A subunit) (Sigma-adaptin 1A) (Adaptor protein complex AP-1 sigma-1A subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1A subunit) (Clathrin assembly protein complex Length = 158 Score = 130 bits (327), Expect = 3e-30 Identities = 61/133 (45%), Positives = 96/133 (72%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F+LL ++QG+ RL ++Y S ER+ + E+++ LAR + CSF+E R+ KVVY+RYA Sbjct: 4 FMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYA 63 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 SL+F ++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E +M G + Sbjct: 64 SLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDV 123 Query: 444 VETSKQNILAPIQ 482 +TSK+++L I+ Sbjct: 124 QDTSKKSVLKAIE 136
>AP1S1_HUMAN (P61966) AP-1 complex subunit sigma-1A (Adapter-related protein| complex 1 sigma-1A subunit) (Sigma-adaptin 1A) (Adaptor protein complex AP-1 sigma-1A subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1A subunit) (Clathrin assembly protein complex Length = 158 Score = 130 bits (327), Expect = 3e-30 Identities = 61/133 (45%), Positives = 96/133 (72%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F+LL ++QG+ RL ++Y S ER+ + E+++ LAR + CSF+E R+ KVVY+RYA Sbjct: 4 FMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYA 63 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 SL+F ++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E +M G + Sbjct: 64 SLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDV 123 Query: 444 VETSKQNILAPIQ 482 +TSK+++L I+ Sbjct: 124 QDTSKKSVLKAIE 136
>AP1T1_YEAST (P35181) AP-1 complex subunit theta-1 (Theta(1)-adaptin) (Clathrin| coat assembly protein AP19) (Clathrin coat-associated protein AP19) (Golgi adaptor AP-1 19 kDa adaptin) (HA1 19 kDa subunit) (Clathrin assembly protein complex 1 small chain) Length = 156 Score = 127 bits (319), Expect = 2e-29 Identities = 62/138 (44%), Positives = 99/138 (71%), Gaps = 2/138 (1%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 ++LLV++QG+ RL ++Y +S E+ + ++ LAR + C+ +E+ ++KVVY+RYA Sbjct: 6 YLLLVSRQGKIRLKKWYTAMSAGEKAKIVKDLTPTILARKPKMCNIIEYNDHKVVYKRYA 65 Query: 264 SLFFLVGVDND-ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM-NG 437 SL+F+VG+ D +NEL LE IH VETMD +FGNVCELDI+F+ KV+ +L EM+M +G Sbjct: 66 SLYFIVGMTPDVDNELLTLEIIHRFVETMDTYFGNVCELDIIFNFSKVYDILNEMIMCDG 125 Query: 438 CIVETSKQNILAPIQLME 491 I E+S++ +L + +M+ Sbjct: 126 SIAESSRKEVLHHVTVMD 143
>AP2S_ASPFU (Q4WS49) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 145 Score = 125 bits (315), Expect = 7e-29 Identities = 68/139 (48%), Positives = 98/139 (70%), Gaps = 2/139 (1%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEH-RNYKVVYRR 257 F+L+ N+QG+TRLA++Y S +E+ L+GE+ R R + Q +FVE R+ K+VYRR Sbjct: 5 FILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRR 64 Query: 258 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 437 YA LFF V VD +NELA LE IH VE +D+ FGNVCELD++F+ KV+ +L+E+ + G Sbjct: 65 YAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAG 124 Query: 438 CIVETSKQNILAPIQLMEK 494 I ETSKQ +L ++ ++K Sbjct: 125 EIEETSKQVVLTRLEHLDK 143
>AP1S3_MOUSE (Q7TN05) AP-1 complex subunit sigma-3 (Adapter-related protein| complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor protein complex AP-1 sigma-1C subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly protein complex Length = 154 Score = 125 bits (314), Expect = 9e-29 Identities = 57/133 (42%), Positives = 93/133 (69%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F+LL ++QG+ RL ++Y L ER+ + +I++ L+R + SF++ + K+VY+RYA Sbjct: 4 FILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKRYA 63 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 SL+F ++N +NEL LE +H VE +D++FGNVCELDI+F+ EK +F+L+E ++ G I Sbjct: 64 SLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEI 123 Query: 444 VETSKQNILAPIQ 482 ETSK+ + I+ Sbjct: 124 QETSKKTAVKAIE 136
>AP1S3_HUMAN (Q96PC3) AP-1 complex subunit sigma-3 (Adapter-related protein| complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor protein complex AP-1 sigma-1C subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly protein complex Length = 154 Score = 124 bits (312), Expect = 2e-28 Identities = 60/133 (45%), Positives = 93/133 (69%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F+LL ++QG+ RL ++Y L ER+ + EIV+ L+R + SFV+ + K+VY+RYA Sbjct: 4 FILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKRYA 63 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 SL+F ++N +NEL LE +H VE +D++FGNVCELDI+F+ EK +F+L+E ++ G I Sbjct: 64 SLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEI 123 Query: 444 VETSKQNILAPIQ 482 ETSK+ + I+ Sbjct: 124 QETSKKIAVKAIE 136
>AP2S_EMENI (Q5BFF8) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 145 Score = 124 bits (311), Expect = 2e-28 Identities = 67/139 (48%), Positives = 97/139 (69%), Gaps = 2/139 (1%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEH-RNYKVVYRR 257 F+L+ N+QG+TRLA++Y S +E+ L+GE+ R R + Q +FVE R+ K+VYRR Sbjct: 5 FILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRR 64 Query: 258 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 437 YA LFF VD +NELA LE IH VE +D+ FGNVCELD++F+ KV+ +L+E+ + G Sbjct: 65 YAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAG 124 Query: 438 CIVETSKQNILAPIQLMEK 494 I ETSKQ +L ++ ++K Sbjct: 125 EIEETSKQVVLTRLEHLDK 143
>AP2S1_MAIZE (O50016) AP-2 complex subunit sigma-1 (Clathrin coat assembly| protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin assembly protein 2 small chain) Length = 132 Score = 121 bits (304), Expect = 1e-27 Identities = 63/128 (49%), Positives = 88/128 (68%), Gaps = 2/128 (1%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F+LL N+QG+TRLA+YY L E+ +E E+ R + R + +FVE R +KV+YRRYA Sbjct: 4 FILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYA 63 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKV--HFMLEEMVMNG 437 LFF + VD +NELA LE IHL VE +D F NVCELD++F+ KV + +L+E ++ G Sbjct: 64 GLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFILAG 123 Query: 438 CIVETSKQ 461 + ETSK+ Sbjct: 124 ELQETSKR 131
>AP2S_SCHPO (Q9Y7L6) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 119 bits (298), Expect = 6e-27 Identities = 60/138 (43%), Positives = 93/138 (67%), Gaps = 1/138 (0%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYRRY 260 F+L+ N+ G+ RL++YY DE+ L+ I + R + Q +F+E N K+VYRRY Sbjct: 4 FILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYRRY 63 Query: 261 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGC 440 A L+F VD+ +N+LAILE IH VE +D FGNVCELD++F+ KV +L+E+++ G Sbjct: 64 AGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILGGE 123 Query: 441 IVETSKQNILAPIQLMEK 494 I E++K+++L I+ +EK Sbjct: 124 IGESNKKSVLERIEALEK 141
>AP3S2_PONPY (Q5RDP9) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 118 bits (295), Expect = 1e-26 Identities = 55/142 (38%), Positives = 93/142 (65%), Gaps = 6/142 (4%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVV 248 +L+ N G+ RL ++Y+ + ++ + E L R D C+F+E +YK++ Sbjct: 5 ILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLI 64 Query: 249 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 428 YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+E+V Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVV 124 Query: 429 MNGCIVETSKQNILAPIQLMEK 494 M G ++ET+ I+A I+ + Sbjct: 125 MGGMVLETNMNEIVAQIEAQNR 146
>AP3S2_MOUSE (Q8BSZ2) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 118 bits (295), Expect = 1e-26 Identities = 55/142 (38%), Positives = 93/142 (65%), Gaps = 6/142 (4%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVV 248 +L+ N G+ RL ++Y+ + ++ + E L R D C+F+E +YK++ Sbjct: 5 ILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLI 64 Query: 249 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 428 YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+E+V Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVV 124 Query: 429 MNGCIVETSKQNILAPIQLMEK 494 M G ++ET+ I+A I+ + Sbjct: 125 MGGMVLETNMNEIVAQIEAQNR 146
>AP3S2_HUMAN (P59780) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 118 bits (295), Expect = 1e-26 Identities = 55/142 (38%), Positives = 93/142 (65%), Gaps = 6/142 (4%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVV 248 +L+ N G+ RL ++Y+ + ++ + E L R D C+F+E +YK++ Sbjct: 5 ILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLI 64 Query: 249 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 428 YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+E+V Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVV 124 Query: 429 MNGCIVETSKQNILAPIQLMEK 494 M G ++ET+ I+A I+ + Sbjct: 125 MGGMVLETNMNEIVAQIEAQNR 146
>AP2S1_RAT (P62744) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin a Length = 142 Score = 117 bits (292), Expect = 3e-26 Identities = 56/136 (41%), Positives = 91/136 (66%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRYA Sbjct: 4 FILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYA 63 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G I Sbjct: 64 GLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 123 Query: 444 VETSKQNILAPIQLME 491 ETS+ +L + +++ Sbjct: 124 RETSQTKVLKQLLMLQ 139
>AP2S1_PONPY (Q5R940) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin Length = 142 Score = 117 bits (292), Expect = 3e-26 Identities = 56/136 (41%), Positives = 91/136 (66%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRYA Sbjct: 4 FILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYA 63 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G I Sbjct: 64 GLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 123 Query: 444 VETSKQNILAPIQLME 491 ETS+ +L + +++ Sbjct: 124 RETSQTKVLKQLLMLQ 139
>AP2S1_MOUSE (P62743) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin Length = 142 Score = 117 bits (292), Expect = 3e-26 Identities = 56/136 (41%), Positives = 91/136 (66%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRYA Sbjct: 4 FILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYA 63 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G I Sbjct: 64 GLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 123 Query: 444 VETSKQNILAPIQLME 491 ETS+ +L + +++ Sbjct: 124 RETSQTKVLKQLLMLQ 139
>AP2S1_HUMAN (P53680) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (HA2 17 kDa subunit) (Clathr Length = 142 Score = 117 bits (292), Expect = 3e-26 Identities = 56/136 (41%), Positives = 91/136 (66%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYA 263 F+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRRYA Sbjct: 4 FILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYA 63 Query: 264 SLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCI 443 L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G I Sbjct: 64 GLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 123 Query: 444 VETSKQNILAPIQLME 491 ETS+ +L + +++ Sbjct: 124 RETSQTKVLKQLLMLQ 139
>AP3S1_MOUSE (Q9DCR2) AP-3 complex subunit sigma-1 (Adapter-related protein| complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma-3A-adaptin) Length = 193 Score = 111 bits (277), Expect = 2e-24 Identities = 55/142 (38%), Positives = 89/142 (62%), Gaps = 6/142 (4%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVV 248 +L+ N G+ RL+++Y+ S D ++ + E R + C+F+E + K++ Sbjct: 5 ILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLI 64 Query: 249 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 428 YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH +L EMV Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMV 124 Query: 429 MNGCIVETSKQNILAPIQLMEK 494 M G ++ET+ I+ I K Sbjct: 125 MGGMVLETNMNEIVTQIDAQNK 146
>AP3S1_HUMAN (Q92572) AP-3 complex subunit sigma-1 (Adapter-related protein| complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma-3A-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 193 Score = 111 bits (277), Expect = 2e-24 Identities = 55/142 (38%), Positives = 89/142 (62%), Gaps = 6/142 (4%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNYKVV 248 +L+ N G+ RL+++Y+ S D ++ + E R + C+F+E + K++ Sbjct: 5 ILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLI 64 Query: 249 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 428 YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH +L EMV Sbjct: 65 YRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMV 124 Query: 429 MNGCIVETSKQNILAPIQLMEK 494 M G ++ET+ I+ I K Sbjct: 125 MGGMVLETNMNEIVTQIDAQNK 146
>AP2S_YEAST (Q00381) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) Length = 147 Score = 100 bits (250), Expect = 2e-21 Identities = 57/141 (40%), Positives = 91/141 (64%), Gaps = 4/141 (2%) Frame = +3 Query: 84 FVLLVNKQGQTRLAQYYEHLSLDERRALEG--EIVRKCLARTDQ-QCSFVEHRNY-KVVY 251 F+L NKQG RL ++++ S D +R+ + +I R +R + Q +FVE + K++Y Sbjct: 5 FILCFNKQGVVRLVRWFDVHSSDPQRSQDAIAQIYRLISSRDHKHQSNFVEFSDSTKLIY 64 Query: 252 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM 431 RRYA L+F++GVD ++E L IHL VE +D FGNVCELDI+F+ KV+ +++EM + Sbjct: 65 RRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVYMIMDEMFI 124 Query: 432 NGCIVETSKQNILAPIQLMEK 494 G I E SK +L + ++++ Sbjct: 125 GGEIQEISKDMLLERLSILDR 145
>AP3S_SCHPO (Q09905) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 165 Score = 98.6 bits (244), Expect = 1e-20 Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 5/142 (3%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHR----NYKVVYR 254 V + N +G+ RL ++Y + ++ L G+I R C+F+E +++YR Sbjct: 5 VFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNRIIYR 64 Query: 255 RYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMN 434 +YA+L+F+ VD E+EL IL+ I + VE +DR F NVCELD++F +++H +L E+V Sbjct: 65 QYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSG 124 Query: 435 GCIVETS-KQNILAPIQLMEKT 497 G ++ET+ + +LA M KT Sbjct: 125 GLVLETNLNEIVLAAQNQMPKT 146
>AP3S_YEAST (P47064) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 194 Score = 86.7 bits (213), Expect = 5e-17 Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 18/156 (11%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLAR-TDQQCSF-------------- 221 VL+ NK+ Q RL ++Y + L +++ L ++ R +D Q SF Sbjct: 5 VLIFNKKCQPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLSNENN 64 Query: 222 ---VEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFH 392 V + + +++Y+ YA+L+F VD+ E+ELAIL+ I VE++DR F V ELD++F+ Sbjct: 65 NDEVNNEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELDLIFN 124 Query: 393 LEKVHFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 500 + + +LEE+V G ++ET+ I+A + + K + Sbjct: 125 WQTLESVLEEIVQGGMVIETNVNRIVASVDELNKAA 160
>AP3S_ASHGO (Q75F71) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 185 Score = 86.3 bits (212), Expect = 6e-17 Identities = 48/152 (31%), Positives = 86/152 (56%), Gaps = 14/152 (9%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVE------------ 227 VL+ NK+ Q RL +YY + L +++ L ++ R Q SF+ Sbjct: 5 VLIFNKKCQPRLVKYYTPVDLPKQKLLLEQVYELISQRNSSIQSSFLITPPSLLSSGSET 64 Query: 228 -HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKV 404 + + +++Y+ YA+L+F VD+ E+ELAIL+ I VE +DR F V ELD++F+ + + Sbjct: 65 INEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCFAEVNELDLIFNWQTL 124 Query: 405 HFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 500 +LEE++ G ++ET+ + I+ + + +TS Sbjct: 125 ESVLEEIIQGGMVIETNVKKIVETVDELNRTS 156
>COPZ1_PONPY (Q5R5F2) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/136 (26%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 260 +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY+ Sbjct: 16 ILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSS 72 Query: 261 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 437 L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G Sbjct: 73 IDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGG 132 Query: 438 CIVETSKQNILAPIQL 485 I+E+ Q ++ + L Sbjct: 133 VILESDPQQVVHRVAL 148
>COPZ1_MOUSE (P61924) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/136 (26%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 260 +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY+ Sbjct: 16 ILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSS 72 Query: 261 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 437 L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G Sbjct: 73 IDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGG 132 Query: 438 CIVETSKQNILAPIQL 485 I+E+ Q ++ + L Sbjct: 133 VILESDPQQVVHRVAL 148
>COPZ1_HUMAN (P61923) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/136 (26%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 260 +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY+ Sbjct: 16 ILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSS 72 Query: 261 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 437 L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G Sbjct: 73 IDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGG 132 Query: 438 CIVETSKQNILAPIQL 485 I+E+ Q ++ + L Sbjct: 133 VILESDPQQVVHRVAL 148
>COPZ1_BOVIN (P35604) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/136 (26%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 260 +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY+ Sbjct: 16 ILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVYKSS 72 Query: 261 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 437 L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V G Sbjct: 73 IDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGG 132 Query: 438 CIVETSKQNILAPIQL 485 I+E+ Q ++ + L Sbjct: 133 VILESDPQQVVHRVAL 148
>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 210 Score = 47.4 bits (111), Expect = 3e-05 Identities = 33/134 (24%), Positives = 69/134 (51%), Gaps = 3/134 (2%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYEHL--SLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 260 V +++ G+ LA+YY+ S+ E+ E + K +RT+ + +F +VY+ Sbjct: 49 VFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT-SRTESEIAFFG--GMTIVYKNS 105 Query: 261 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 437 LF V + ENEL ++ + L E+++ NV + ++ +++ +L+E+V G Sbjct: 106 IDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGG 165 Query: 438 CIVETSKQNILAPI 479 I+E+ Q ++ + Sbjct: 166 VILESDPQQVIQKV 179
>AP2M_SCHPO (Q09718) AP-2 complex subunit mu (Probable clathrin coat assembly| protein AP50) (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) Length = 446 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/129 (20%), Positives = 65/129 (50%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYAS 266 + + N +G T + + + H D ++++ L TD + V + +Y ++ Sbjct: 5 LFIFNLKGDTLICKTFRH---DLKKSVTEIFRVAILTNTDYRHPIVSIGSSTYIYTKHED 61 Query: 267 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 446 L+ + + N + +LEF+ L++ + +FG + E + ++ + +L+EM+ G I+ Sbjct: 62 LYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYG-II 120 Query: 447 ETSKQNILA 473 +T++ + LA Sbjct: 121 QTTEPDALA 129
>COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 205 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/134 (23%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYEHL--SLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRY 260 V +++ G+ LA+YY+ S+ E+ E + K +RT+ + +F+ +VY+ Sbjct: 44 VFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT-SRTESEIAFLG--GMTIVYKSS 100 Query: 261 ASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMVMNG 437 +F V + ENEL ++ + L +++ NV + ++ +++ +L+E V G Sbjct: 101 IDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDETVDGG 160 Query: 438 CIVETSKQNILAPI 479 I+E+ Q ++ + Sbjct: 161 VILESDPQQVIQKV 174
>AP3M2_RAT (P53678) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa subu Length = 418 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/81 (33%), Positives = 44/81 (54%) Frame = +3 Query: 228 HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVH 407 H VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 53 HHYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVY 110 Query: 408 FMLEEMVMNGCIVETSKQNIL 470 +LEEM+ NG + T + NIL Sbjct: 111 EVLEEMLDNGFPLAT-ESNIL 130
>AP3M2_MOUSE (Q8R2R9) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa su Length = 418 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/81 (33%), Positives = 44/81 (54%) Frame = +3 Query: 228 HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVH 407 H VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 53 HHYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVY 110 Query: 408 FMLEEMVMNGCIVETSKQNIL 470 +LEEM+ NG + T + NIL Sbjct: 111 EVLEEMLDNGFPLAT-ESNIL 130
>AP3M2_HUMAN (P53677) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa su Length = 418 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/81 (33%), Positives = 44/81 (54%) Frame = +3 Query: 228 HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVH 407 H VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 53 HHYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVY 110 Query: 408 FMLEEMVMNGCIVETSKQNIL 470 +LEEM+ NG + T + NIL Sbjct: 111 EVLEEMLDNGFPLAT-ESNIL 130
>AP3M1_RAT (P53676) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) (Clathrin coat assembly protein AP47 homolog 1) (Clathrin coat-associated protein AP47 homolog 1) (Golgi ada Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = +3 Query: 267 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 446 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 447 ETSKQNIL 470 T + NIL Sbjct: 124 AT-ESNIL 130
>AP3M1_MOUSE (Q9JKC8) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = +3 Query: 267 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 446 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 447 ETSKQNIL 470 T + NIL Sbjct: 124 AT-ESNIL 130
>AP3M1_HUMAN (Q9Y2T2) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = +3 Query: 267 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 446 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 447 ETSKQNIL 470 T + NIL Sbjct: 124 AT-ESNIL 130
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 39.3 bits (90), Expect = 0.008 Identities = 26/79 (32%), Positives = 43/79 (54%) Frame = +3 Query: 234 NYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFM 413 +Y V R+ F V + + L ++EF+H + ET+ +FG E I ++ V+ + Sbjct: 54 HYLVSTHRHGISFVAV-IQAEVPPLFVIEFLHRVAETLQDYFGECSEASIKDNVVIVYEL 112 Query: 414 LEEMVMNGCIVETSKQNIL 470 LEEM+ NG + T + NIL Sbjct: 113 LEEMLDNGFPLAT-ESNIL 130
>COPZ_YEAST (P53600) Coatomer subunit zeta (Zeta-coat protein) (Zeta-COP)| Length = 189 Score = 37.7 bits (86), Expect = 0.024 Identities = 29/144 (20%), Positives = 67/144 (46%), Gaps = 13/144 (9%) Frame = +3 Query: 87 VLLVNKQGQTRLAQYYE------------HLSLDERRALEGEIVRKCLARTDQQCSFVEH 230 VL++++QG+ A+YY+ S+ +++ E ++ RK + + F +H Sbjct: 12 VLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHKQDSEILIFEDH 71 Query: 231 RNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGN-VCELDIMFHLEKVH 407 V+Y+ Y + + +ENE+ + + + +D + + + +I + + V Sbjct: 72 ---LVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNIQENYDMVL 128 Query: 408 FMLEEMVMNGCIVETSKQNILAPI 479 ++E + NG I+ET I + + Sbjct: 129 LAIDETIDNGVILETDSNTIASRV 152
>COPD_YEAST (P43621) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| Length = 545 Score = 35.0 bits (79), Expect = 0.16 Identities = 21/115 (18%), Positives = 56/115 (48%) Frame = +3 Query: 93 LVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLF 272 + +QG+ L++ ++ LS D L + ++ +FVE ++ + VYR + + + Sbjct: 7 ITTRQGKPLLSRQFKDLSKDRVLELLSNF-QNLVSEISSDHTFVEDKHVRYVYRPFDNYY 65 Query: 273 FLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 437 ++ + N + L ++L +T++ + + + +I + ++ +E+V G Sbjct: 66 IILITNRQSNIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEILSSFDEIVSMG 120
>RSC8_YEAST (P43609) Chromatin structure remodeling complex protein RSC8| (Remodel the structure of chromatin complex subunit 8) (SWI3 homolog) Length = 557 Score = 32.7 bits (73), Expect = 0.78 Identities = 15/56 (26%), Positives = 30/56 (53%) Frame = +3 Query: 294 DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQ 461 +E++ I E + L +E ++ F +C+L+ +EK+ ++ E M + SKQ Sbjct: 423 EESQAIIQELVKLTMEKLESKFTKLCDLETQLEMEKLKYVKESEKMLNDRLSLSKQ 478
>COPD_CHICK (Q5ZL57) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 510 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = +3 Query: 192 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 371 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 372 ELDIMFHLEKVHFMLEEMVMNG 437 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_RAT (Q66H80) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = +3 Query: 192 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 371 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 372 ELDIMFHLEKVHFMLEEMVMNG 437 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_PONPY (Q5RA77) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = +3 Query: 192 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 371 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 372 ELDIMFHLEKVHFMLEEMVMNG 437 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_MOUSE (Q5XJY5) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = +3 Query: 192 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 371 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 372 ELDIMFHLEKVHFMLEEMVMNG 437 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_HUMAN (P48444) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = +3 Query: 192 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 371 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 372 ELDIMFHLEKVHFMLEEMVMNG 437 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_BOVIN (P53619) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = +3 Query: 192 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 371 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 372 ELDIMFHLEKVHFMLEEMVMNG 437 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>VPS54_DROME (Q9VLC0) Vacuolar protein sorting protein 54 (Protein scattered)| Length = 940 Score = 30.4 bits (67), Expect = 3.9 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Frame = -3 Query: 475 GANMFCLLVSTMQPFITISSSMKCTFSRWNMMSSSHTLP-----KWRSMVSTRRCMNSR 314 GA LLV QP+ +S+S+ + S+H LP R++V RC NSR Sbjct: 696 GAGNPVLLVEGKQPYTLVSASLMLIRMLYEYGCSAHRLPLLASYHARNVVDLLRCFNSR 754
>YJBB_SHIFL (P0AF44) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = +3 Query: 267 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 395 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>YJBB_ECOLI (P0AF43) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = +3 Query: 267 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 395 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>YJBB_ECO57 (Q8X5Z7) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = +3 Query: 267 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 395 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic| region Length = 636 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = -3 Query: 424 ISSSMKCTFSRWNMMSSSHTLPKWRSMVSTRRCMNS---RMANSFSSLSTPT 278 I+ SM S M SSS +W S+ ST ++S +++S+SSLS+P+ Sbjct: 117 ITPSMSIFSSTSPMSSSSSITSEWSSLTSTTPTLSSSATSLSSSWSSLSSPS 168
>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin| assembly protein complex 1 medium chain) (Clathrin coat assembly protein AP54) (Clathrin coat-associated protein AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa subunit) Length = 475 Score = 29.3 bits (64), Expect = 8.6 Identities = 20/90 (22%), Positives = 38/90 (42%) Frame = +3 Query: 168 EGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETM 347 + ++ CL + F++H + VV + N AI F+H LVE + Sbjct: 42 QSNLIPPCLNHNGLEYLFIQHNDLYVV---------AIVTSLSANAAAIFTFLHKLVEVL 92 Query: 348 DRHFGNVCELDIMFHLEKVHFMLEEMVMNG 437 + V E I + ++ +L+E++ G Sbjct: 93 SDYLKTVEEESIRDNFVIIYELLDEVMDYG 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,946,180 Number of Sequences: 219361 Number of extensions: 1000849 Number of successful extensions: 2841 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 2742 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2824 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
