ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal12d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FRDC_WOLSU (P17413) Fumarate reductase cytochrome b subunit 29 3.1
2KCNA5_RABIT (P50638) Potassium voltage-gated channel subfamily A... 28 4.0
3KASM_ARATH (Q8L3X9) 3-oxoacyl-[acyl-carrier-protein] synthase, m... 28 4.0
4LAML2_XENLA (P21910) Lamin-L(II) 28 6.9
5RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1... 27 9.0
6PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplas... 27 9.0

>FRDC_WOLSU (P17413) Fumarate reductase cytochrome b subunit|
          Length = 256

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 249 AGKSTRSKKGRLPATAEWGSEATGVGVGVVL 157
           +G +   KK R+PA  +W   ATG+ +G+ +
Sbjct: 11  SGVTPERKKSRMPAKLDWWQSATGLFLGLFM 41



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>KCNA5_RABIT (P50638) Potassium voltage-gated channel subfamily A member 5|
           (Voltage-gated potassium channel subunit Kv1.5)
          Length = 598

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 308 QASTSPVREETGDGDGGMEATEE---GCGEL 391
           Q+  SP+ EE G+GD G+   EE   G G L
Sbjct: 71  QSRRSPLEEEEGEGDPGLSVAEEQTLGAGAL 101



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>KASM_ARATH (Q8L3X9) 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial|
           precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase)
           (mtKAS)
          Length = 461

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 207 TAEWGSEATGVGVGVVLGSDCEVCEAADTRKGKR 106
           T E   E TGV +G  +GS C++ EAA     KR
Sbjct: 138 TEEEEKERTGVSIGGGIGSICDIVEAAQLICEKR 171



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>LAML2_XENLA (P21910) Lamin-L(II)|
          Length = 623

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 249 AGKSTRSKKGRLPATAEWGSEATGVGVGVVLGS 151
           A +++RSK+ R+    E G  +TG G G  LGS
Sbjct: 413 ATRTSRSKRRRVEEEYEEGGASTGFGAGHSLGS 445



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>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
            (Helicase-like protein NHL)
          Length = 1400

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
 Frame = -2

Query: 258  GKEAGKSTRSKKGRLPATAEW---------GSEATGV-GVGVVLGSDCEVCEAAD 124
            G++AG S  S     PA +EW         G +ATG  G  +  G  C+ C A D
Sbjct: 1197 GEDAGPSQSSGPPHGPAASEWGEPHGRDIAGQQATGAPGGPLSAGCVCQGCGAED 1251



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>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 258 GKEAGKSTRSKKGRLPATAEWGSEATGVGVGVVLGSDCEVCEAADTRKGKRRP 100
           GKE  KS  S KG++  +       TG  +GV      E  + +DT  G + P
Sbjct: 267 GKENNKSAASSKGKITLSVTQTKPETGEVIGVF-----ESIQPSDTDLGAKAP 314


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,182,573
Number of Sequences: 219361
Number of extensions: 358790
Number of successful extensions: 1131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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