>ref|NM_183875.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1869

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 59/66 (89%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                       
Query: 332 gaggagacnggagacggagacggaggcatggaggctactgaggagggctgtggtgagcta 391
           |||||||| |||| |||||  |||||| |||||||| ||||||||||| |||||||||||
Sbjct: 397 gaggagac-ggaggcggagcgggaggcgtggaggctgctgaggagggcggtggtgagcta 455

                 
Query: 392 ctgcgg 397
           ||||||
Sbjct: 456 ctgcgg 461



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 186 cctccgatccccattccgccgtcgctggtaacctccccttcttcgaccgtgtgctcttcc 245
           ||||||||||||   |||||||| | || |||||||||||||||||||| || |||||||
Sbjct: 239 cctccgatccccgcgccgccgtctccggcaacctccccttcttcgaccgcgtcctcttcc 298

              
Query: 246 cgg 248
           |||
Sbjct: 299 cgg 301

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 59/66 (89%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                            
Query: 332      gaggagacnggagacggagacggaggcatggaggctactgaggagggctgtggtgagcta 391
                |||||||| |||| |||||  |||||| |||||||| ||||||||||| |||||||||||
Sbjct: 12853721 gaggagac-ggaggcggagcgggaggcgtggaggctgctgaggagggcggtggtgagcta 12853779

                      
Query: 392      ctgcgg 397
                ||||||
Sbjct: 12853780 ctgcgg 12853785



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                            
Query: 186      cctccgatccccattccgccgtcgctggtaacctccccttcttcgaccgtgtgctcttcc 245
                ||||||||||||   |||||||| | || |||||||||||||||||||| || |||||||
Sbjct: 12853563 cctccgatccccgcgccgccgtctccggcaacctccccttcttcgaccgcgtcctcttcc 12853622

                   
Query: 246      cgg 248
                |||
Sbjct: 12853623 cgg 12853625

>dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1140D12
          Length = 139301

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 59/66 (89%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                        
Query: 332  gaggagacnggagacggagacggaggcatggaggctactgaggagggctgtggtgagcta 391
            |||||||| |||| |||||  |||||| |||||||| ||||||||||| |||||||||||
Sbjct: 5162 gaggagac-ggaggcggagcgggaggcgtggaggctgctgaggagggcggtggtgagcta 5220

                  
Query: 392  ctgcgg 397
            ||||||
Sbjct: 5221 ctgcgg 5226



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                        
Query: 186  cctccgatccccattccgccgtcgctggtaacctccccttcttcgaccgtgtgctcttcc 245
            ||||||||||||   |||||||| | || |||||||||||||||||||| || |||||||
Sbjct: 5004 cctccgatccccgcgccgccgtctccggcaacctccccttcttcgaccgcgtcctcttcc 5063

               
Query: 246  cgg 248
            |||
Sbjct: 5064 cgg 5066

>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0489E06
          Length = 140229

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 59/66 (89%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                          
Query: 332    gaggagacnggagacggagacggaggcatggaggctactgaggagggctgtggtgagcta 391
              |||||||| |||| |||||  |||||| |||||||| ||||||||||| |||||||||||
Sbjct: 134120 gaggagac-ggaggcggagcgggaggcgtggaggctgctgaggagggcggtggtgagcta 134178

                    
Query: 392    ctgcgg 397
              ||||||
Sbjct: 134179 ctgcgg 134184



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                          
Query: 186    cctccgatccccattccgccgtcgctggtaacctccccttcttcgaccgtgtgctcttcc 245
              ||||||||||||   |||||||| | || |||||||||||||||||||| || |||||||
Sbjct: 133962 cctccgatccccgcgccgccgtctccggcaacctccccttcttcgaccgcgtcctcttcc 134021

                 
Query: 246    cgg 248
              |||
Sbjct: 134022 cgg 134024

>dbj|AK120720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G12, full
           insert sequence
          Length = 2483

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 59/66 (89%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                       
Query: 332 gaggagacnggagacggagacggaggcatggaggctactgaggagggctgtggtgagcta 391
           |||||||| |||| |||||  |||||| |||||||| ||||||||||| |||||||||||
Sbjct: 604 gaggagac-ggaggcggagcgggaggcgtggaggctgctgaggagggcggtggtgagcta 662

                 
Query: 392 ctgcgg 397
           ||||||
Sbjct: 663 ctgcgg 668



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 186 cctccgatccccattccgccgtcgctggtaacctccccttcttcgaccgtgtgctcttcc 245
           ||||||||||||   |||||||| | || |||||||||||||||||||| || |||||||
Sbjct: 446 cctccgatccccgcgccgccgtctccggcaacctccccttcttcgaccgcgtcctcttcc 505

              
Query: 246 cgg 248
           |||
Sbjct: 506 cgg 508

>gb|AY187621.1| Oryza sativa (indica cultivar-group) invertase (INV) mRNA, complete
           cds
          Length = 1937

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                       
Query: 332 gaggagacnggagacggagacggaggcatggaggctactgaggagggctgtggtgagcta 391
           |||||||| |||| |||||  |||||| |||||||| ||||||||||| |||||||||||
Sbjct: 421 gaggagac-ggaggcggagcgggaggcgtggaggctgctgaggagggcggtggtgagcta 479

                
Query: 392 ctgcg 396
           |||||
Sbjct: 480 ctgcg 484



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 186 cctccgatccccattccgccgtcgctggtaacctccccttcttcgaccgtgtgctcttcc 245
           ||||||||||||   |||||||| | || |||||||||||||||||||| || |||||||
Sbjct: 263 cctccgatccccgcgccgccgtctccggcaacctccccttcttcgaccgcgtcctcttcc 322

              
Query: 246 cgg 248
           |||
Sbjct: 323 cgg 325

>gb|AE008877.1| Salmonella typhimurium LT2, section 181 of 220 of the complete genome
          Length = 22492

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 285   cggcgccgccagctgatgaaggg 307
             |||||||||||||||||||||||
Sbjct: 19599 cggcgccgccagctgatgaaggg 19621

>gb|AE008800.1| Salmonella typhimurium LT2, section 104 of 220 of the complete genome
          Length = 22908

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 285   cggcgccgccagctgatgaaggg 307
             |||||||||||||||||||||||
Sbjct: 20382 cggcgccgccagctgatgaaggg 20404

>emb|AL627274.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
            complete chromosome; segment 10/20
          Length = 256050

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 285  cggcgccgccagctgatgaaggg 307
            |||||||||||||||||||||||
Sbjct: 8256 cggcgccgccagctgatgaaggg 8278

>emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 16/20
          Length = 245050

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 285    cggcgccgccagctgatgaaggg 307
              |||||||||||||||||||||||
Sbjct: 103492 cggcgccgccagctgatgaaggg 103470

>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 285     cggcgccgccagctgatgaaggg 307
               |||||||||||||||||||||||
Sbjct: 3805296 cggcgccgccagctgatgaaggg 3805318



 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 285    cggcgccgccagctgatgaaggg 307
              |||||||||||||||||||||||
Sbjct: 692963 cggcgccgccagctgatgaaggg 692941

>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 285     cggcgccgccagctgatgaaggg 307
               |||||||||||||||||||||||
Sbjct: 3816982 cggcgccgccagctgatgaaggg 3816960



 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 285    cggcgccgccagctgatgaaggg 307
              |||||||||||||||||||||||
Sbjct: 695457 cggcgccgccagctgatgaaggg 695435

>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 285     cggcgccgccagctgatgaaggg 307
               |||||||||||||||||||||||
Sbjct: 2366589 cggcgccgccagctgatgaaggg 2366611

>gb|AC055872.23| Homo sapiens chromosome 17, clone RP11-636N17, complete sequence
          Length = 202360

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 241   cttcccggcctccttccctctg 262
             ||||||||||||||||||||||
Sbjct: 50422 cttcccggcctccttccctctg 50443

>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 122     gtgtcggcggcctcgcatacctcgc 146
               |||||||||| ||||||||||||||
Sbjct: 1411669 gtgtcggcgggctcgcatacctcgc 1411693

>emb|AL022163.1|HS551E13 Human DNA sequence from clone RP4-551E13 on chromosome Xp11.2-11.3
             Contains the 3' end of a novel gene (MGC51029), a farnesyl
             diphosphate synthase (farnesyl pyrophosphate synthetase
             dimethylallyltranstransferase geranyltranstransferase)
             (FDPS) pseudogene and a ubinuclein 1 (UBN1) pseudogene,
             complete sequence
          Length = 107418

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 78    cccacccgccacaccaccacc 98
             |||||||||||||||||||||
Sbjct: 11028 cccacccgccacaccaccacc 11008

>gb|AC156948.10| Mus musculus 10 BAC RP24-347D15 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 181617

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 367   tactgaggagggctgtggtga 387
             |||||||||||||||||||||
Sbjct: 50851 tactgaggagggctgtggtga 50831

>gb|AC165974.4| Mus musculus BAC clone RP23-16J4 from chromosome 6, complete sequence
          Length = 237816

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    cacccgccacaccaccacca 99
             ||||||||||||||||||||
Sbjct: 35519 cacccgccacaccaccacca 35500

>ref|XM_544889.2| PREDICTED: Canis familiaris similar to bromodomain and WD repeat
            domain containing 1 isoform A (LOC487764), mRNA
          Length = 7632

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   cctcctcacctccgcctcag 31
            ||||||||||||||||||||
Sbjct: 6627 cctcctcacctccgcctcag 6608

>ref|XM_797325.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053445553.10) partial mRNA
          Length = 1545

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  acccgccacaccaccaccac 100
           ||||||||||||||||||||
Sbjct: 785 acccgccacaccaccaccac 766

>ref|XM_801357.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509557.10) partial mRNA
          Length = 1425

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  acccgccacaccaccaccac 100
           ||||||||||||||||||||
Sbjct: 665 acccgccacaccaccaccac 646

>emb|AL646091.4| Mouse DNA sequence from clone RP23-101K9 on chromosome 11, complete
             sequence
          Length = 133477

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    gatgctcccacccgccacaccacc 95
             ||||||||||||| ||||||||||
Sbjct: 52030 gatgctcccaccccccacaccacc 52053

>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete
              sequence
          Length = 194361

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 187    ctccgatccccattccgccgtcgc 210
              |||||||||||||||||| |||||
Sbjct: 114739 ctccgatccccattccgcggtcgc 114762

>gb|AC023682.4| Drosophila melanogaster X BAC RP98-7F10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179236

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 3      ccgccagcgcctcctcacctccgc 26
              ||||||||||||||||| ||||||
Sbjct: 103799 ccgccagcgcctcctcagctccgc 103776

>gb|AC079319.19| Homo sapiens 12q BAC RP11-118A3 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 152449

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 255   tccctctggagaccccgcctgtgg 278
             |||||||||||||||| |||||||
Sbjct: 73541 tccctctggagacccctcctgtgg 73518

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 187      ctccgatccccattccgccgtcgc 210
                |||||||||||||||||| |||||
Sbjct: 20237004 ctccgatccccattccgcggtcgc 20237027

>gb|AE003436.3| Drosophila melanogaster chromosome X, section 20 of 74 of the complete
              sequence
          Length = 317322

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 3      ccgccagcgcctcctcacctccgc 26
              ||||||||||||||||| ||||||
Sbjct: 172834 ccgccagcgcctcctcagctccgc 172857

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 187      ctccgatccccattccgccgtcgc 210
                |||||||||||||||||| |||||
Sbjct: 20248280 ctccgatccccattccgcggtcgc 20248303

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 79      ccacccgccacaccaccacc 98
               ||||||||||||||||||||
Sbjct: 3016617 ccacccgccacaccaccacc 3016636

>emb|AL670256.6| Mouse DNA sequence from clone RP23-300H22 on chromosome 4, complete
             sequence
          Length = 237318

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 72    gatgctcccacccgccacaccacc 95
             ||||||||||||| ||||||||||
Sbjct: 43014 gatgctcccaccccccacaccacc 42991


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,091,851
Number of Sequences: 3902068
Number of extensions: 3091851
Number of successful extensions: 57643
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57417
Number of HSP's gapped (non-prelim): 226
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)