ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal12c19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete ... 42 0.99
2emb|AL954734.15| Zebrafish DNA sequence from clone DKEY-11F24 in... 42 0.99
3gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay... 42 0.99
4ref|XM_676279.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 3.9
5gb|AC092329.3| Homo sapiens chromosome 19 clone RP11-15H20, comp... 40 3.9
6gb|AC010300.8| Homo sapiens chromosome 19 clone CTB-176F20, comp... 40 3.9
7gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb044... 40 3.9
8emb|AL953864.6| Zebrafish DNA sequence from clone DKEY-32E6 in l... 40 3.9
9emb|BX294130.5| Zebrafish DNA sequence from clone DKEY-263O22 in... 40 3.9
10gb|AY104409.1| Zea mays PCO124784 mRNA sequence 40 3.9
11emb|AJ871581.1| Streptomyces achromogenes subsp. rubradiris comp... 40 3.9

>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      cgccgtggtgaccatggcgat 26
              |||||||||||||||||||||
Sbjct: 301210 cgccgtggtgaccatggcgat 301190



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>emb|AL954734.15| Zebrafish DNA sequence from clone DKEY-11F24 in linkage group 6,
             complete sequence
          Length = 116532

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    cgtgttgataataataagtaa 94
             |||||||||||||||||||||
Sbjct: 55081 cgtgttgataataataagtaa 55101



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>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     tgataataataagtaaggtta 99
              |||||||||||||||||||||
Sbjct: 144996 tgataataataagtaaggtta 145016



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>ref|XM_676279.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8102.2), mRNA
          Length = 1377

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 agccggtcgcgacgccggcg 135
           ||||||||||||||||||||
Sbjct: 397 agccggtcgcgacgccggcg 378



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>gb|AC092329.3| Homo sapiens chromosome 19 clone RP11-15H20, complete sequence
          Length = 186233

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    ggtaataattttttctttcc 154
              ||||||||||||||||||||
Sbjct: 173291 ggtaataattttttctttcc 173310



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>gb|AC010300.8| Homo sapiens chromosome 19 clone CTB-176F20, complete sequence
          Length = 73684

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   ggtaataattttttctttcc 154
             ||||||||||||||||||||
Sbjct: 15752 ggtaataattttttctttcc 15771



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>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete
             sequence
          Length = 132549

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     ggccgccgtggtgaccatgg 22
             ||||||||||||||||||||
Sbjct: 67776 ggccgccgtggtgaccatgg 67757



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>emb|AL953864.6| Zebrafish DNA sequence from clone DKEY-32E6 in linkage group 23,
             complete sequence
          Length = 249608

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    ataataataagtaaggttat 100
             ||||||||||||||||||||
Sbjct: 70938 ataataataagtaaggttat 70957



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>emb|BX294130.5| Zebrafish DNA sequence from clone DKEY-263O22 in linkage group 19,
             complete sequence
          Length = 205973

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   tgctgtgttcatgtcctcca 190
             ||||||||||||||||||||
Sbjct: 23329 tgctgtgttcatgtcctcca 23348



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>gb|AY104409.1| Zea mays PCO124784 mRNA sequence
          Length = 553

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ggccgccgtggtgaccatgg 22
           ||||||||||||||||||||
Sbjct: 259 ggccgccgtggtgaccatgg 240



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>emb|AJ871581.1| Streptomyces achromogenes subsp. rubradiris complete rubradirin gene
             cluster, strain NRRL 3061
          Length = 105657

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     cggccgccgtggtgaccatggcga 25
             |||||||||||||||||| |||||
Sbjct: 61340 cggccgccgtggtgaccacggcga 61363


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,948,068
Number of Sequences: 3902068
Number of extensions: 2948068
Number of successful extensions: 54019
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53998
Number of HSP's gapped (non-prelim): 21
length of query: 298
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 276
effective length of database: 17,147,199,772
effective search space: 4732627137072
effective search space used: 4732627137072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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