| Clone Name | baal11m15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156O10, full insert sequence Length = 1447 Score = 159 bits (80), Expect = 1e-35 Identities = 238/288 (82%), Gaps = 2/288 (0%) Strand = Plus / Plus Query: 10 gacggagaggaggacgacaactacaagcacctgacggcggagctgtgccgggtctaccgg 69 ||||| |||||||||||| ||||||||| |||| | |||| ||||||| ||||| | Sbjct: 1026 gacggcgaggaggacgacgactacaagcggatgaccgaggagatgtgccgcatctacagc 1085 Query: 70 cacgcgcccagggagttcaccgtcatcgacaggggccggaggaactcggtttgcctg-ag 128 ||||| ||| | | |||||| ||||||||||||| |||||||||| ||||| || || Sbjct: 1086 cacgccccccgccaattcaccatcatcgacagggggaggaggaactccatttgcgtgcag 1145 Query: 129 caggagagggttcgaggagctgtacgtcttcagcccaggatccaagtacgagtggtacgg 188 | ||||||||||||||||| ||||||| |||||||| || || |||||| |||||||||| Sbjct: 1146 c-ggagagggttcgaggaggtgtacgtgttcagcccggggtcaaagtaccagtggtacgg 1204 Query: 189 gaagtttgcctacgtgtgcatcgggcctgccatgctggagcccgtggtgctgccgccggg 248 ||||| |||||||||||| | ||||| ||||||||||||||| | |||||| | || || Sbjct: 1205 gaagtacgcctacgtgtgcgtggggcccgccatgctggagcccatcgtgctgtcacctgg 1264 Query: 249 agccacgtggcaaggggcgcagtgcatccgcaacccaaacctgtagat 296 ||||| ||| |||||| |||| | | |||||||||||||| ||||| Sbjct: 1265 ggccacatggtcaggggctcagtacctgcgcaacccaaacctctagat 1312
>ref|XM_469743.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1236 Score = 155 bits (78), Expect = 2e-34 Identities = 233/282 (82%), Gaps = 2/282 (0%) Strand = Plus / Plus Query: 10 gacggagaggaggacgacaactacaagcacctgacggcggagctgtgccgggtctaccgg 69 ||||| |||||||||||| ||||||||| |||| | |||| ||||||| ||||| | Sbjct: 952 gacggcgaggaggacgacgactacaagcggatgaccgaggagatgtgccgcatctacagc 1011 Query: 70 cacgcgcccagggagttcaccgtcatcgacaggggccggaggaactcggtttgcctg-ag 128 ||||| ||| | | |||||| ||||||||||||| |||||||||| ||||| || || Sbjct: 1012 cacgccccccgccaattcaccatcatcgacagggggaggaggaactccatttgcgtgcag 1071 Query: 129 caggagagggttcgaggagctgtacgtcttcagcccaggatccaagtacgagtggtacgg 188 | ||||||||||||||||| ||||||| |||||||| || || |||||| |||||||||| Sbjct: 1072 c-ggagagggttcgaggaggtgtacgtgttcagcccggggtcaaagtaccagtggtacgg 1130 Query: 189 gaagtttgcctacgtgtgcatcgggcctgccatgctggagcccgtggtgctgccgccggg 248 ||||| |||||||||||| | ||||| ||||||||||||||| | |||||| | || || Sbjct: 1131 gaagtacgcctacgtgtgcgtggggcccgccatgctggagcccatcgtgctgtcacctgg 1190 Query: 249 agccacgtggcaaggggcgcagtgcatccgcaacccaaacct 290 ||||| ||| |||||| |||| | | |||||||||||||| Sbjct: 1191 ggccacatggtcaggggctcagtacctgcgcaacccaaacct 1232
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 131 bits (66), Expect = 3e-27 Identities = 141/166 (84%) Strand = Plus / Minus Query: 131 ggagagggttcgaggagctgtacgtcttcagcccaggatccaagtacgagtggtacggga 190 ||||||||||||||||| ||||||| |||||||| || || |||||| |||||||||||| Sbjct: 30504321 ggagagggttcgaggaggtgtacgtgttcagcccggggtcaaagtaccagtggtacggga 30504262 Query: 191 agtttgcctacgtgtgcatcgggcctgccatgctggagcccgtggtgctgccgccgggag 250 ||| |||||||||||| | ||||| ||||||||||||||| | |||||| | || || | Sbjct: 30504261 agtacgcctacgtgtgcgtggggcccgccatgctggagcccatcgtgctgtcacctgggg 30504202 Query: 251 ccacgtggcaaggggcgcagtgcatccgcaacccaaacctgtagat 296 |||| ||| |||||| |||| | | |||||||||||||| ||||| Sbjct: 30504201 ccacatggtcaggggctcagtacctgcgcaacccaaacctctagat 30504156 Score = 44.1 bits (22), Expect = 0.47 Identities = 76/94 (80%) Strand = Plus / Minus Query: 10 gacggagaggaggacgacaactacaagcacctgacggcggagctgtgccgggtctaccgg 69 ||||| |||||||||||| ||||||||| |||| | |||| ||||||| ||||| | Sbjct: 30504789 gacggcgaggaggacgacgactacaagcggatgaccgaggagatgtgccgcatctacagc 30504730 Query: 70 cacgcgcccagggagttcaccgtcatcgacaggg 103 ||||| ||| | | |||||| |||||||||||| Sbjct: 30504729 cacgccccccgccaattcaccatcatcgacaggg 30504696
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 131 bits (66), Expect = 3e-27 Identities = 141/166 (84%) Strand = Plus / Minus Query: 131 ggagagggttcgaggagctgtacgtcttcagcccaggatccaagtacgagtggtacggga 190 ||||||||||||||||| ||||||| |||||||| || || |||||| |||||||||||| Sbjct: 35894 ggagagggttcgaggaggtgtacgtgttcagcccggggtcaaagtaccagtggtacggga 35835 Query: 191 agtttgcctacgtgtgcatcgggcctgccatgctggagcccgtggtgctgccgccgggag 250 ||| |||||||||||| | ||||| ||||||||||||||| | |||||| | || || | Sbjct: 35834 agtacgcctacgtgtgcgtggggcccgccatgctggagcccatcgtgctgtcacctgggg 35775 Query: 251 ccacgtggcaaggggcgcagtgcatccgcaacccaaacctgtagat 296 |||| ||| |||||| |||| | | |||||||||||||| ||||| Sbjct: 35774 ccacatggtcaggggctcagtacctgcgcaacccaaacctctagat 35729 Score = 44.1 bits (22), Expect = 0.47 Identities = 76/94 (80%) Strand = Plus / Minus Query: 10 gacggagaggaggacgacaactacaagcacctgacggcggagctgtgccgggtctaccgg 69 ||||| |||||||||||| ||||||||| |||| | |||| ||||||| ||||| | Sbjct: 36362 gacggcgaggaggacgacgactacaagcggatgaccgaggagatgtgccgcatctacagc 36303 Query: 70 cacgcgcccagggagttcaccgtcatcgacaggg 103 ||||| ||| | | |||||| |||||||||||| Sbjct: 36302 cacgccccccgccaattcaccatcatcgacaggg 36269
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 131 bits (66), Expect = 3e-27 Identities = 141/166 (84%) Strand = Plus / Minus Query: 131 ggagagggttcgaggagctgtacgtcttcagcccaggatccaagtacgagtggtacggga 190 ||||||||||||||||| ||||||| |||||||| || || |||||| |||||||||||| Sbjct: 30595743 ggagagggttcgaggaggtgtacgtgttcagcccggggtcaaagtaccagtggtacggga 30595684 Query: 191 agtttgcctacgtgtgcatcgggcctgccatgctggagcccgtggtgctgccgccgggag 250 ||| |||||||||||| | ||||| ||||||||||||||| | |||||| | || || | Sbjct: 30595683 agtacgcctacgtgtgcgtggggcccgccatgctggagcccatcgtgctgtcacctgggg 30595624 Query: 251 ccacgtggcaaggggcgcagtgcatccgcaacccaaacctgtagat 296 |||| ||| |||||| |||| | | |||||||||||||| ||||| Sbjct: 30595623 ccacatggtcaggggctcagtacctgcgcaacccaaacctctagat 30595578 Score = 44.1 bits (22), Expect = 0.47 Identities = 76/94 (80%) Strand = Plus / Minus Query: 10 gacggagaggaggacgacaactacaagcacctgacggcggagctgtgccgggtctaccgg 69 ||||| |||||||||||| ||||||||| |||| | |||| ||||||| ||||| | Sbjct: 30596211 gacggcgaggaggacgacgactacaagcggatgaccgaggagatgtgccgcatctacagc 30596152 Query: 70 cacgcgcccagggagttcaccgtcatcgacaggg 103 ||||| ||| | | |||||| |||||||||||| Sbjct: 30596151 cacgccccccgccaattcaccatcatcgacaggg 30596118
>gb|BT009098.1| Triticum aestivum clone wkm2c.pk006.d11:fis, full insert mRNA sequence Length = 772 Score = 97.6 bits (49), Expect = 4e-17 Identities = 58/61 (95%) Strand = Plus / Minus Query: 408 taatacaatgtgtgctggagaagtgcagatgctgctgcaccttcagctcagcagaggaga 467 ||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| Sbjct: 680 taatacaatgtgtgccggagaagtgcatatgctgccgcaccttcagctcagcagaggaga 621 Query: 468 t 468 | Sbjct: 620 t 620
>ref|XM_424398.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ13842 (LOC426786), mRNA Length = 2115 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 418 tgtgctggagaagtgcagatgct 440 ||||||||||||||||||||||| Sbjct: 87 tgtgctggagaagtgcagatgct 65
>emb|BX469889.7| Zebrafish DNA sequence from clone DKEY-156P3 in linkage group 18, complete sequence Length = 177975 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 420 tgctggagaagtgcagatgctgctgc 445 |||||||||||| ||||||||||||| Sbjct: 85143 tgctggagaagttcagatgctgctgc 85118
>ref|XM_703913.1| PREDICTED: Danio rerio similar to Si:ch211-238n5.5 protein, transcript variant 5 (LOC559703), mRNA Length = 1922 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 420 tgctggagaagtgcagatgctgctgc 445 |||||||||||| ||||||||||||| Sbjct: 147 tgctggagaagttcagatgctgctgc 122
>ref|XM_703912.1| PREDICTED: Danio rerio similar to Si:ch211-238n5.5 protein, transcript variant 4 (LOC559703), mRNA Length = 1997 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 420 tgctggagaagtgcagatgctgctgc 445 |||||||||||| ||||||||||||| Sbjct: 267 tgctggagaagttcagatgctgctgc 242
>ref|XM_703911.1| PREDICTED: Danio rerio similar to Si:ch211-238n5.5 protein, transcript variant 3 (LOC559703), mRNA Length = 1904 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 420 tgctggagaagtgcagatgctgctgc 445 |||||||||||| ||||||||||||| Sbjct: 129 tgctggagaagttcagatgctgctgc 104
>ref|XM_703910.1| PREDICTED: Danio rerio similar to Si:ch211-238n5.5 protein, transcript variant 2 (LOC559703), mRNA Length = 1940 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 420 tgctggagaagtgcagatgctgctgc 445 |||||||||||| ||||||||||||| Sbjct: 165 tgctggagaagttcagatgctgctgc 140
>ref|XM_682896.1| PREDICTED: Danio rerio similar to Si:ch211-238n5.5 protein, transcript variant 1 (LOC559703), mRNA Length = 2042 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 420 tgctggagaagtgcagatgctgctgc 445 |||||||||||| ||||||||||||| Sbjct: 267 tgctggagaagttcagatgctgctgc 242
>gb|M10217.1|XELMTCG Xenopus laevis mitochondrial DNA, complete genome Length = 17553 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 424 ggagaagtgcagatgctgctgc 445 |||||||||||||||||||||| Sbjct: 6189 ggagaagtgcagatgctgctgc 6168
>emb|BX470166.11| Zebrafish DNA sequence from clone CH211-238N5 in linkage group 18, complete sequence Length = 117241 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 420 tgctggagaagtgcagatgctgctgc 445 |||||||||||| ||||||||||||| Sbjct: 62436 tgctggagaagttcagatgctgctgc 62461
>ref|XM_425794.1| PREDICTED: Gallus gallus similar to transmembrane receptor Roundabout3 (LOC428235), mRNA Length = 3792 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 ggagcccgtggtgctgccgcc 245 ||||||||||||||||||||| Sbjct: 1905 ggagcccgtggtgctgccgcc 1925
>emb|CR727277.2|CNS0GO43 Tetraodon nigroviridis full-length cDNA Length = 1546 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 430 gtgcagatgctgctgcaccttcagc 454 ||||||| ||||||||||||||||| Sbjct: 256 gtgcagaagctgctgcaccttcagc 232
>emb|CR718209.2|CNS0GH47 Tetraodon nigroviridis full-length cDNA Length = 1025 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 430 gtgcagatgctgctgcaccttcagc 454 ||||||| ||||||||||||||||| Sbjct: 103 gtgcagaagctgctgcaccttcagc 79
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 427 gaagtgcagatgctgctgcac 447 ||||||||||||||||||||| Sbjct: 1856438 gaagtgcagatgctgctgcac 1856458
>gb|AC153575.5| Mus musculus 6 BAC RP23-157O3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215023 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 atatactgcagcaacaatact 335 ||||||||||||||||||||| Sbjct: 93341 atatactgcagcaacaatact 93361
>gb|DQ216379.1| Taeniopygia guttata clone 0058P0061H08 XP_424937-like mRNA, complete sequence Length = 1190 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtggtgctgccgccgggagc 251 |||||||||||||||||||| Sbjct: 37 gtggtgctgccgccgggagc 56
>gb|DQ216378.1| Taeniopygia guttata clone 0058P0061G10 XP_424937-like mRNA, complete sequence Length = 1190 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtggtgctgccgccgggagc 251 |||||||||||||||||||| Sbjct: 37 gtggtgctgccgccgggagc 56
>gb|DQ216377.1| Taeniopygia guttata clone 0058P0002C09 XP_424937-like mRNA, complete sequence Length = 1188 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtggtgctgccgccgggagc 251 |||||||||||||||||||| Sbjct: 17 gtggtgctgccgccgggagc 36
>gb|DQ216376.1| Taeniopygia guttata clone 0058P0006E11 XP_424937-like mRNA, complete sequence Length = 1176 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtggtgctgccgccgggagc 251 |||||||||||||||||||| Sbjct: 20 gtggtgctgccgccgggagc 39
>gb|DQ216375.1| Taeniopygia guttata clone 0063P0023C01 XP_424937-like mRNA, complete sequence Length = 1163 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtggtgctgccgccgggagc 251 |||||||||||||||||||| Sbjct: 7 gtggtgctgccgccgggagc 26
>gb|DQ216374.1| Taeniopygia guttata clone 0058P0007F09 XP_424937-like mRNA, complete sequence Length = 1198 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtggtgctgccgccgggagc 251 |||||||||||||||||||| Sbjct: 45 gtggtgctgccgccgggagc 64
>gb|DQ216373.1| Taeniopygia guttata clone 0065P0026H05 XP_424937-like mRNA, complete sequence Length = 1194 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 gtggtgctgccgccgggagc 251 |||||||||||||||||||| Sbjct: 38 gtggtgctgccgccgggagc 57
>gb|AC158993.2| Mus musculus BAC clone RP24-427N13 from chromosome 7, complete sequence Length = 179746 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 aacaaggagatcagtaggct 386 |||||||||||||||||||| Sbjct: 69709 aacaaggagatcagtaggct 69690
>gb|AC166370.3| Mus musculus BAC clone RP23-20I24 from chromosome 9, complete sequence Length = 242229 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 414 aatgtgtgctggagaagtgcagatgctg 441 |||||||||||||||| |||||||||| Sbjct: 10334 aatgtgtgctggagaaaagcagatgctg 10307
>gb|AC109603.8| Mus musculus strain 129/Sv clone ct7-534h6 map 5, complete sequence Length = 81390 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 acgtgtgaaacaaggagatc 378 |||||||||||||||||||| Sbjct: 32204 acgtgtgaaacaaggagatc 32223
>gb|AC159741.2| Mus musculus BAC clone RP23-178B21 from chromosome 9, complete sequence Length = 185878 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 414 aatgtgtgctggagaagtgcagatgctg 441 |||||||||||||||| |||||||||| Sbjct: 99100 aatgtgtgctggagaaaagcagatgctg 99073
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 agggttcgaggagctgtacg 154 |||||||||||||||||||| Sbjct: 4424654 agggttcgaggagctgtacg 4424635
>gb|AC008506.7|AC008506 Homo sapiens chromosome 5 clone CTC-447O6, complete sequence Length = 191557 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 acaagataataatacaatgt 418 |||||||||||||||||||| Sbjct: 188535 acaagataataatacaatgt 188554
>emb|CR962122.2| Medicago truncatula chromosome 5 clone mte1-46l20, COMPLETE SEQUENCE Length = 150486 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 caacaatactattgctcatg 345 |||||||||||||||||||| Sbjct: 22075 caacaatactattgctcatg 22056 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,483,604 Number of Sequences: 3902068 Number of extensions: 4483604 Number of successful extensions: 89481 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89300 Number of HSP's gapped (non-prelim): 174 length of query: 547 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 524 effective length of database: 17,143,297,704 effective search space: 8983087996896 effective search space used: 8983087996896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)