ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal11m14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_190482.1| Oryza sativa (japonica cultivar-group), predic... 113 7e-22
2dbj|AK061927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
4dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
5dbj|AK121745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
6dbj|AK064796.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
7dbj|AK064222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
8ref|XM_362434.1| Magnaporthe grisea 70-15 hypothetical protein (... 44 0.54
9emb|AL645822.24| Zebrafish DNA sequence from clone RP71-1C22 in ... 42 2.1
10emb|AL021393.1|HS747E2 Human DNA sequence from clone CTA-747E2 o... 42 2.1
11emb|BX255947.6| Zebrafish DNA sequence from clone CH211-260D9 in... 42 2.1
12dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 2.1
13gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 2.1
14gb|AC153572.13| Mus musculus 10 BAC RP23-187O15 (Roswell Park Ca... 40 8.4
15gb|AC127411.3| Mus musculus BAC clone RP23-60E24 from chromosome... 40 8.4
16gb|AC125315.4| Mus musculus BAC clone RP24-370B21 from chromosom... 40 8.4
17emb|AJ843080.1| Streptomyces fradiae neomycin biosynthetic gene ... 40 8.4
18emb|CR847852.10| Human DNA sequence from clone DAMA-345G11 on ch... 40 8.4
19emb|BX005439.8| Human DNA sequence from clone DASS-81K16 on chro... 40 8.4
20emb|AL662866.7| Human DNA sequence from clone XXbac-205D4 on chr... 40 8.4
21emb|AL645933.8| Human DNA sequence from clone XXbac-181B23 on ch... 40 8.4
22emb|AL137145.13| Human DNA sequence from clone RP11-563J2 on chr... 40 8.4
23gb|AC159325.13| Mus musculus 10 BAC RP23-382A21 (Roswell Park Ca... 40 8.4
24dbj|AB211959.1| Streptomyces fradiae orf6, neoU, neoT, neoS, neo... 40 8.4
25gb|AC025882.7| Homo sapiens chromosome 17, clone RP11-445F12, co... 40 8.4
26gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 8.4
27dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
28gb|AC015938.17| Homo sapiens chromosome 17, clone CTD-3194G12, c... 40 8.4
29dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 8.4
30gb|AE005075.1| Halobacterium sp. NRC-1 section 106 of 170 of the... 40 8.4
31ref|NM_210284.1| Eremothecium gossypii AER070Cp (AER070C), mRNA 40 8.4
32emb|CT030660.14| Mouse DNA sequence from clone RP23-455F4 on chr... 40 8.4
33gb|AC004215.1|AC004215 Homo sapiens clone UWGC:r13c from 6p21, c... 40 8.4
34emb|AJ629247.1| Streptomyces fradiae neomycin biosynthesis gene ... 40 8.4
35gb|AC154793.2| Mus musculus BAC clone RP23-88B6 from chromosome ... 40 8.4
36emb|AL831754.2| Mouse DNA sequence from clone RP23-295A1 on chro... 40 8.4
37dbj|AB000882.1| Homo sapiens genomic DNA for centromeric end of ... 40 8.4
38dbj|AB000880.1| Homo sapiens genomic DNA for centromeric end of ... 40 8.4

>ref|NM_190482.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1341

 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Plus

                                                                       
Query: 394 actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
           |||||||||||  |||||||   ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 523 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 582

                                                                       
Query: 454 ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
           |||||||||||| | ||||| |  |||||||||     | |  ||||| ||| | |||  
Sbjct: 583 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 642

                                                                       
Query: 514 gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
           ||||||||||||||||||||||  ||||||||||||||||| || || |  ||||| |||
Sbjct: 643 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 702

                                                    
Query: 574 aagtgttttgcagggaaagttgtcaagtatgacagtgaaag 614
           |||  ||||| ||||||||| | ||||||||| ||||||||
Sbjct: 703 aagcattttgtagggaaagtggacaagtatgatagtgaaag 743



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>dbj|AK061927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C05, full
           insert sequence
          Length = 1394

 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Plus

                                                                       
Query: 394 actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
           |||||||||||  |||||||   ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 420 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 479

                                                                       
Query: 454 ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
           |||||||||||| | ||||| |  |||||||||     | |  ||||| ||| | |||  
Sbjct: 480 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 539

                                                                       
Query: 514 gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
           ||||||||||||||||||||||  ||||||||||||||||| || || |  ||||| |||
Sbjct: 540 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 599

                                                    
Query: 574 aagtgttttgcagggaaagttgtcaagtatgacagtgaaag 614
           |||  ||||| ||||||||| | ||||||||| ||||||||
Sbjct: 600 aagcattttgtagggaaagtggacaagtatgatagtgaaag 640



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Minus

                                                                            
Query: 394      actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
                |||||||||||  |||||||   ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 35811744 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 35811685

                                                                            
Query: 454      ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
                |||||||||||| | ||||| |  |||||||||     | |  ||||| ||| | |||  
Sbjct: 35811684 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 35811625

                                                                            
Query: 514      gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
                ||||||||||||||||||||||  ||||||||||||||||| || || |  ||||| |||
Sbjct: 35811624 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 35811565

                                                         
Query: 574      aagtgttttgcagggaaagttgtcaagtatgacagtgaaag 614
                |||  ||||| ||||||||| | ||||||||| ||||||||
Sbjct: 35811564 aagcattttgtagggaaagtggacaagtatgatagtgaaag 35811524



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>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0506B12
          Length = 170759

 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Minus

                                                                         
Query: 394   actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
             |||||||||||  |||||||   ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 76202 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 76143

                                                                         
Query: 454   ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
             |||||||||||| | ||||| |  |||||||||     | |  ||||| ||| | |||  
Sbjct: 76142 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 76083

                                                                         
Query: 514   gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
             ||||||||||||||||||||||  ||||||||||||||||| || || |  ||||| |||
Sbjct: 76082 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 76023

                                                      
Query: 574   aagtgttttgcagggaaagttgtcaagtatgacagtgaaag 614
             |||  ||||| ||||||||| | ||||||||| ||||||||
Sbjct: 76022 aagcattttgtagggaaagtggacaagtatgatagtgaaag 75982



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>dbj|AK121745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E04, full
           insert sequence
          Length = 1450

 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Plus

                                                                       
Query: 394 actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
           |||||||||||  |||||||   ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 432 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 491

                                                                       
Query: 454 ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
           |||||||||||| | ||||| |  |||||||||     | |  ||||| ||| | |||  
Sbjct: 492 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 551

                                                                       
Query: 514 gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
           ||||||||||||||||||||||  ||||||||||||||||| || || |  ||||| |||
Sbjct: 552 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 611

                                                    
Query: 574 aagtgttttgcagggaaagttgtcaagtatgacagtgaaag 614
           |||  ||||| ||||||||| | ||||||||| ||||||||
Sbjct: 612 aagcattttgtagggaaagtggacaagtatgatagtgaaag 652



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>dbj|AK064796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000C20, full
            insert sequence
          Length = 2688

 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Plus

                                                                        
Query: 394  actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
            |||||||||||  |||||||   ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 1711 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 1770

                                                                        
Query: 454  ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
            |||||||||||| | ||||| |  |||||||||     | |  ||||| ||| | |||  
Sbjct: 1771 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 1830

                                                                        
Query: 514  gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
            ||||||||||||||||||||||  ||||||||||||||||| || || |  ||||| |||
Sbjct: 1831 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 1890

                                                     
Query: 574  aagtgttttgcagggaaagttgtcaagtatgacagtgaaag 614
            |||  ||||| ||||||||| | ||||||||| ||||||||
Sbjct: 1891 aagcattttgtagggaaagtggacaagtatgatagtgaaag 1931



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>dbj|AK064222.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G02, full
           insert sequence
          Length = 2188

 Score =  113 bits (57), Expect = 7e-22
 Identities = 180/221 (81%)
 Strand = Plus / Plus

                                                                       
Query: 394 actgcatctgttgtcaaagtatacagggagcctgccatcattatcaatggtgtcccagac 453
           |||||||||||  |||||||   ||| ||||||||| ||||||||||||| || ||||||
Sbjct: 428 actgcatctgtcatcaaagttgccagagagcctgccgtcattatcaatggagttccagac 487

                                                                       
Query: 454 ttgcctcctgatttcgcatctggttcacaaccttcagtaagagatgctccaggatctcga 513
           |||||||||||| | ||||| |  |||||||||     | |  ||||| ||| | |||  
Sbjct: 488 ttgcctcctgatgtagcatccgaatcacaacctgagccacgtaatgctgcagaacctcct 547

                                                                       
Query: 514 gttgatcatcgttttggtgaatggctagaagggcggaaagtgagaaagcagtttggagac 573
           ||||||||||||||||||||||  ||||||||||||||||| || || |  ||||| |||
Sbjct: 548 gttgatcatcgttttggtgaatttctagaagggcggaaagtaaggaaaccttttggggac 607

                                                    
Query: 574 aagtgttttgcagggaaagttgtcaagtatgacagtgaaag 614
           |||  ||||| ||||||||| | ||||||||| ||||||||
Sbjct: 608 aagcattttgtagggaaagtggacaagtatgatagtgaaag 648



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>ref|XM_362434.1| Magnaporthe grisea 70-15 hypothetical protein (MG08017.4) partial
           mRNA
          Length = 2115

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 85  gcagccggggccggctcgacgg 106
           ||||||||||||||||||||||
Sbjct: 101 gcagccggggccggctcgacgg 80



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>emb|AL645822.24| Zebrafish DNA sequence from clone RP71-1C22 in linkage group 20, complete
              sequence
          Length = 181112

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 357    ggtcatggaggggagcaagaa 377
              |||||||||||||||||||||
Sbjct: 109627 ggtcatggaggggagcaagaa 109607



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>emb|AL021393.1|HS747E2 Human DNA sequence from clone CTA-747E2 on chromosome 22q12.1, complete
             sequence
          Length = 109859

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 319   ctgtttgtagctaaatacaaggaattggt 347
             |||||||  ||||||||||||||||||||
Sbjct: 34114 ctgtttggtgctaaatacaaggaattggt 34142



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>emb|BX255947.6| Zebrafish DNA sequence from clone CH211-260D9 in linkage group 19,
             complete sequence
          Length = 147891

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 357   ggtcatggaggggagcaagaa 377
             |||||||||||||||||||||
Sbjct: 63493 ggtcatggaggggagcaagaa 63513



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 85      gcagccggggccggctcgacg 105
               |||||||||||||||||||||
Sbjct: 4510477 gcagccggggccggctcgacg 4510497



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 147     ctccggctccacccggccctt 167
               |||||||||||||||||||||
Sbjct: 3767787 ctccggctccacccggccctt 3767807



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>gb|AC153572.13| Mus musculus 10 BAC RP23-187O15 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    ggcgtcctcccctcccgcgg 83
             ||||||||||||||||||||
Sbjct: 28883 ggcgtcctcccctcccgcgg 28902



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>gb|AC127411.3| Mus musculus BAC clone RP23-60E24 from chromosome 5, complete sequence
          Length = 217636

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    tggttcacaaccttcagtaa 493
              ||||||||||||||||||||
Sbjct: 154776 tggttcacaaccttcagtaa 154795



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>gb|AC125315.4| Mus musculus BAC clone RP24-370B21 from chromosome 19, complete
             sequence
          Length = 155192

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 558   aaagcagtttggagacaagtgttt 581
             |||||| |||||||||||||||||
Sbjct: 62922 aaagcattttggagacaagtgttt 62899



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>emb|AJ843080.1| Streptomyces fradiae neomycin biosynthetic gene cluster, strain MCIMB
             8233
          Length = 30837

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 94    gccggctcgacggcctcccccggc 117
             ||||||||| ||||||||||||||
Sbjct: 23168 gccggctcggcggcctcccccggc 23145



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>emb|CR847852.10| Human DNA sequence from clone DAMA-345G11 on chromosome 6, complete
             sequence
          Length = 56201

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 556   agaaagcagtttggagacaa 575
             ||||||||||||||||||||
Sbjct: 35833 agaaagcagtttggagacaa 35814



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>emb|BX005439.8| Human DNA sequence from clone DASS-81K16 on chromosome 6, complete
             sequence
          Length = 110001

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 556   agaaagcagtttggagacaa 575
             ||||||||||||||||||||
Sbjct: 24091 agaaagcagtttggagacaa 24072



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>emb|AL662866.7| Human DNA sequence from clone XXbac-205D4 on chromosome 6 Contains the
             gene for MHC class 1 region ORF (P5-1), the MICB gene for
             MHC class 1 polypeptide-related sequence B, the  HCG26
             gene for theHLA complex group 26 and two CpG islands,
             complete sequence
          Length = 97315

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 556   agaaagcagtttggagacaa 575
             ||||||||||||||||||||
Sbjct: 22749 agaaagcagtttggagacaa 22730



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>emb|AL645933.8| Human DNA sequence from clone XXbac-181B23 on chromosome 6 Contains the
             MICA gene for MHC class 1 polypeptide-related sequence A,
             the HCP5 gene for the HLA complex P5, the HCG26, the gene
             coding for a transcript for an MHC class I fragment (clone
             3.8-1)and four CpG islands, complete sequence
          Length = 111328

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 556   agaaagcagtttggagacaa 575
             ||||||||||||||||||||
Sbjct: 54978 agaaagcagtttggagacaa 54959



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>emb|AL137145.13| Human DNA sequence from clone RP11-563J2 on chromosome 10 Contains the
             3' end of the PRKCQ gene for protein kinase C, theta and a
             CpG island, complete sequence
          Length = 189767

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   aaggaattggtgcaatatca 356
             ||||||||||||||||||||
Sbjct: 67842 aaggaattggtgcaatatca 67823



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>gb|AC159325.13| Mus musculus 10 BAC RP23-382A21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 201815

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    ggcgtcctcccctcccgcgg 83
             ||||||||||||||||||||
Sbjct: 52938 ggcgtcctcccctcccgcgg 52919



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>dbj|AB211959.1| Streptomyces fradiae orf6, neoU, neoT, neoS, neoR, neoA, neoB, neoC,
             neoD, neoE, neoF, neoG, neoH, neoI, neoJ, neoK, neoL,
             neoM, neoN, neoO, neoP, neoQ, orf1, orf2, orf3, orf4, orf5
             genes, complete and partial cds
          Length = 39237

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 94    gccggctcgacggcctcccccggc 117
             ||||||||| ||||||||||||||
Sbjct: 26985 gccggctcggcggcctcccccggc 26962



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>gb|AC025882.7| Homo sapiens chromosome 17, clone RP11-445F12, complete sequence
          Length = 181991

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     cggcggcgtcctcccctccc 79
              ||||||||||||||||||||
Sbjct: 131967 cggcggcgtcctcccctccc 131948



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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 136    cgggtccagccctccggctccacc 159
              ||||||| ||||||||||||||||
Sbjct: 766171 cgggtcccgccctccggctccacc 766194



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 59       acggcggcgtcctcccctcc 78
                ||||||||||||||||||||
Sbjct: 21009888 acggcggcgtcctcccctcc 21009869



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>gb|AC015938.17| Homo sapiens chromosome 17, clone CTD-3194G12, complete sequence
          Length = 180393

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     cggcggcgtcctcccctccc 79
              ||||||||||||||||||||
Sbjct: 173621 cggcggcgtcctcccctccc 173640



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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 556    agaaagcagtttggagacaa 575
              ||||||||||||||||||||
Sbjct: 506176 agaaagcagtttggagacaa 506195



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>gb|AE005075.1| Halobacterium sp. NRC-1 section 106 of 170 of the complete genome
          Length = 10850

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 46   cacgaaaccgacaacggcggcgtcctcc 73
            ||||| ||||||||||||| ||||||||
Sbjct: 8000 cacgacaccgacaacggcgtcgtcctcc 7973



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>ref|NM_210284.1| Eremothecium gossypii AER070Cp (AER070C), mRNA
          Length = 1944

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 136 cgggtccagccctccggctccacc 159
           ||||||| ||||||||||||||||
Sbjct: 200 cgggtcccgccctccggctccacc 177



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>emb|CT030660.14| Mouse DNA sequence from clone RP23-455F4 on chromosome 13, complete
             sequence
          Length = 174127

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   tggttcacaaccttcagtaa 493
             ||||||||||||||||||||
Sbjct: 58292 tggttcacaaccttcagtaa 58273



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>gb|AC004215.1|AC004215 Homo sapiens clone UWGC:r13c from 6p21, complete sequence
          Length = 36488

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 556   agaaagcagtttggagacaa 575
             ||||||||||||||||||||
Sbjct: 20161 agaaagcagtttggagacaa 20180



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>emb|AJ629247.1| Streptomyces fradiae neomycin biosynthesis gene cluster, strain DSM
             40063
          Length = 50466

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 94    gccggctcgacggcctcccccggc 117
             ||||||||| ||||||||||||||
Sbjct: 31714 gccggctcggcggcctcccccggc 31691



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>gb|AC154793.2| Mus musculus BAC clone RP23-88B6 from chromosome 13, complete sequence
          Length = 182356

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    tggttcacaaccttcagtaa 493
              ||||||||||||||||||||
Sbjct: 176507 tggttcacaaccttcagtaa 176526



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>emb|AL831754.2| Mouse DNA sequence from clone RP23-295A1 on chromosome 4, complete
             sequence
          Length = 189029

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 563   agtttggagacaagtgtttt 582
             ||||||||||||||||||||
Sbjct: 59646 agtttggagacaagtgtttt 59665



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>dbj|AB000882.1| Homo sapiens genomic DNA for centromeric end of MHC class I region on
              chromosome 6, complete sequence
          Length = 148960

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 556    agaaagcagtttggagacaa 575
              ||||||||||||||||||||
Sbjct: 126157 agaaagcagtttggagacaa 126176



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>dbj|AB000880.1| Homo sapiens genomic DNA for centromeric end of MHC class I region
           on chromosome 6, cosmid clone: TY2F10, complete sequence
          Length = 22973

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 556 agaaagcagtttggagacaa 575
           ||||||||||||||||||||
Sbjct: 170 agaaagcagtttggagacaa 189


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,077,328
Number of Sequences: 3902068
Number of extensions: 4077328
Number of successful extensions: 83826
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83555
Number of HSP's gapped (non-prelim): 271
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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