ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal11m06 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | ref|XM_479524.1| Oryza sativa (japonica cultivar-group), mRNA | 78 | 2e-11 | 2 | dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... | 78 | 2e-11 | 3 | dbj|AK072868.1| Oryza sativa (japonica cultivar-group) cDNA clon... | 78 | 2e-11 | 4 | dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic D... | 78 | 2e-11 |
|---|
>ref|XM_479524.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2108 Score = 77.8 bits (39), Expect = 2e-11 Identities = 58/65 (89%) Strand = Plus / Plus Query: 223 aggaaccatcttagggaatgcagagagatgtgtntgnatgctagagagctaccttgcgag 282 ||||| || ||||||||||||||| ||||||| || ||||||||||||||||||| ||| Sbjct: 233 aggaaacaccttagggaatgcagaaagatgtgcttgcatgctagagagctaccttgtgag 292 Query: 283 ggaat 287 ||||| Sbjct: 293 ggaat 297
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 77.8 bits (39), Expect = 2e-11 Identities = 58/65 (89%) Strand = Plus / Minus Query: 223 aggaaccatcttagggaatgcagagagatgtgtntgnatgctagagagctaccttgcgag 282 ||||| || ||||||||||||||| ||||||| || ||||||||||||||||||| ||| Sbjct: 28675114 aggaaacaccttagggaatgcagaaagatgtgcttgcatgctagagagctaccttgtgag 28675055 Query: 283 ggaat 287 ||||| Sbjct: 28675054 ggaat 28675050
>dbj|AK072868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141O10, full insert sequence Length = 2108 Score = 77.8 bits (39), Expect = 2e-11 Identities = 58/65 (89%) Strand = Plus / Plus Query: 223 aggaaccatcttagggaatgcagagagatgtgtntgnatgctagagagctaccttgcgag 282 ||||| || ||||||||||||||| ||||||| || ||||||||||||||||||| ||| Sbjct: 233 aggaaacaccttagggaatgcagaaagatgtgcttgcatgctagagagctaccttgtgag 292 Query: 283 ggaat 287 ||||| Sbjct: 293 ggaat 297
>dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1409_C08 Length = 90673 Score = 77.8 bits (39), Expect = 2e-11 Identities = 58/65 (89%) Strand = Plus / Minus Query: 223 aggaaccatcttagggaatgcagagagatgtgtntgnatgctagagagctaccttgcgag 282 ||||| || ||||||||||||||| ||||||| || ||||||||||||||||||| ||| Sbjct: 50284 aggaaacaccttagggaatgcagaaagatgtgcttgcatgctagagagctaccttgtgag 50225 Query: 283 ggaat 287 ||||| Sbjct: 50224 ggaat 50220 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 992,522 Number of Sequences: 3902068 Number of extensions: 992522 Number of successful extensions: 16007 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15998 Number of HSP's gapped (non-prelim): 9 length of query: 290 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 268 effective length of database: 17,147,199,772 effective search space: 4595449538896 effective search space used: 4595449538896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
