>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4
          Length = 1203

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 144  SGGSDPPPRCCGLRSRPSPAAGICILISTRRNHLRECREMCLHARELP 287
            S  S PPP  CG  S P+P+AG+         H  +     L + + P
Sbjct: 877  SSSSSPPPGACGSPSAPTPSAGVAATTIAGFGHFHKALGGSLSSSDSP 924

>UVRC_COLP3 (Q47Z18) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 639

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 243 LRECREMCLHARELPC--EGIGRVAAPLSALIDLDDTASQHHTAHLF 377
           +R+C +    AR  PC    +GR +AP    I +DD   Q + A LF
Sbjct: 166 IRQCEDSYYRARSRPCLQHQLGRCSAPCVDKISVDDYKEQVNLAKLF 212

>CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein kinase 15 (EC|
           2.7.11.1) (Serine/threonine-protein kinase ATPK10)
           (SOS2-like protein kinase PKS3) (SOS-interacting protein
           2) (SNF1-related kinase 3.1)
          Length = 421

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +1

Query: 556 EQKGNILMHKYEMGKMLGQ 612
           E+KG++LM +YE+GK LGQ
Sbjct: 2   EKKGSVLMLRYEVGKFLGQ 20

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = -2

Query: 601 SSPSRTCASEYSPSAPP*WQAGRQADVHRKKQQRSRELAREPAGA 467
           S P R      SPS PP  + GR  D + +   RSR   R PA A
Sbjct: 787 SPPRRRAVESRSPSPPPRGR-GRSYDRYSRSPSRSRSRTRSPAAA 830

>XPSM_XANCP (P29039) Protein xpsM|
          Length = 237

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 478 PAGAGWPQPSPPRW*SKMMVEMPRRTPLCRSTWKKR 371
           PA      PSPP W     V MPRR P+ RS  + R
Sbjct: 2   PAATWTASPSPPNW----PVPMPRRPPMPRSVKRDR 33

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2161

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 574 EYSPSAPP*WQAGRQADVHRKKQQRSRELAREPAGAGWPQPSPP 443
           +Y  S PP +Q  +Q  + +++QQ+  +  ++  G   P P PP
Sbjct: 637 KYQKSLPPRFQRQQQEQLLKQQQQQQWQQQQQQQGTAPPAPVPP 680

>YMCR_STRLA (P43458) Putative HTH-type transcriptional regulator in mcrB|
           3'region
          Length = 281

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 595 PSRTCASEYSPSAPP*WQAGRQADVHRKKQQRSRELAREPAGAGWPQPSP 446
           P RT A E  P APP      +  +H    +     +R P   GW Q +P
Sbjct: 24  PWRTTAPE--PGAPPHEHLSARRKIHSVSPEYEERTSRLPGAIGWVQGAP 71

>TEGP_BHV1S (Q08098) Probable tegument protein|
          Length = 158

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = +3

Query: 147 GGSDPPPRC---CGLRSRPSPAAGICILISTRRNHLRECREMCLHARELPCEGIGRVAAP 317
           GG  P P     C      S  AG  ++   R+   R  R  C+ A  L C G+G  AA 
Sbjct: 84  GGYVPVPAADADCYYSESDSETAGEFLIRMGRQQRRRHRRRRCMIAAALTCIGLGACAAA 143

Query: 318 LSA 326
            +A
Sbjct: 144 AAA 146

>MYC_AVIMH (P0C0N9) Viral myc transforming protein (v-Myc)|
          Length = 412

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 22/76 (28%), Positives = 32/76 (42%)
 Frame = -2

Query: 613 PARASSPSRTCASEYSPSAPP*WQAGRQADVHRKKQQRSRELAREPAGAGWPQPSPPRW* 434
           P   S PS+    +Y    P  +    + + +   QQRS EL  +P     P PS   W 
Sbjct: 2   PLSVSLPSKNYDYDYDSVQPYFYFEEEEENFYSAAQQRSSEL--QP-----PAPSEDIWK 54

Query: 433 SKMMVEMPRRTPLCRS 386
              ++  P  +P CRS
Sbjct: 55  KFELLPAPPLSPSCRS 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,659,286
Number of Sequences: 219361
Number of extensions: 1675923
Number of successful extensions: 5422
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5406
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)