| Clone Name | baal11k05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105027.1| Zea mays PCO081602 mRNA sequence Length = 1570 Score = 60.0 bits (30), Expect = 5e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 301 gatgatgatgatgcacaagtggatggtccatctgaagatggagcag 346 ||||||||||| ||||||| |||||||||||| |||||||||||| Sbjct: 372 gatgatgatgaagcacaagctgatggtccatctcaagatggagcag 417 Score = 40.1 bits (20), Expect = 5.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 182 caaccaaggagatgggggcattgcatgttgggcaaa 217 ||||||||||||||| ||| |||||||||| |||| Sbjct: 241 caaccaaggagatggatgcactgcatgttggacaaa 276
>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone OSJNBb0003F09, complete sequence Length = 159600 Score = 56.0 bits (28), Expect = 9e-05 Identities = 51/58 (87%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 289 tcaccaccagcagatgatgatgat---gcacaagtggatggtccatctgaagatggag 343 |||||||||| ||||||||||||| || |||| ||||||||||||| ||||||||| Sbjct: 65753 tcaccaccagaagatgatgatgatgaagcgcaaggggatggtccatctcaagatggag 65810
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 56.0 bits (28), Expect = 9e-05 Identities = 51/58 (87%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 289 tcaccaccagcagatgatgatgat---gcacaagtggatggtccatctgaagatggag 343 |||||||||| ||||||||||||| || |||| ||||||||||||| ||||||||| Sbjct: 26940786 tcaccaccagaagatgatgatgatgaagcgcaaggggatggtccatctcaagatggag 26940843
>dbj|AK122063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115K11, full insert sequence Length = 1791 Score = 56.0 bits (28), Expect = 9e-05 Identities = 51/58 (87%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 289 tcaccaccagcagatgatgatgat---gcacaagtggatggtccatctgaagatggag 343 |||||||||| ||||||||||||| || |||| ||||||||||||| ||||||||| Sbjct: 322 tcaccaccagaagatgatgatgatgaagcgcaaggggatggtccatctcaagatggag 379
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 56.0 bits (28), Expect = 9e-05 Identities = 51/58 (87%), Gaps = 3/58 (5%) Strand = Plus / Plus Query: 289 tcaccaccagcagatgatgatgat---gcacaagtggatggtccatctgaagatggag 343 |||||||||| ||||||||||||| || |||| ||||||||||||| ||||||||| Sbjct: 26868956 tcaccaccagaagatgatgatgatgaagcgcaaggggatggtccatctcaagatggag 26869013
>ref|XM_483588.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1389 Score = 52.0 bits (26), Expect = 0.001 Identities = 59/70 (84%) Strand = Plus / Plus Query: 276 aggagctcagtcgtcaccaccagcagatgatgatgatgcacaagtggatggtccatctga 335 |||||||| || |||||||||| | |||||||||||||| ||||||| ||| ||| | Sbjct: 138 aggagctccgtactcaccaccagaaaatgatgatgatgcagaagtggactatccgtctca 197 Query: 336 agatggagca 345 |||||||||| Sbjct: 198 agatggagca 207
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.001 Identities = 59/70 (84%) Strand = Plus / Minus Query: 276 aggagctcagtcgtcaccaccagcagatgatgatgatgcacaagtggatggtccatctga 335 |||||||| || |||||||||| | |||||||||||||| ||||||| ||| ||| | Sbjct: 27119283 aggagctccgtactcaccaccagaaaatgatgatgatgcagaagtggactatccgtctca 27119224 Query: 336 agatggagca 345 |||||||||| Sbjct: 27119223 agatggagca 27119214
>dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1521_G02 Length = 117964 Score = 52.0 bits (26), Expect = 0.001 Identities = 59/70 (84%) Strand = Plus / Minus Query: 276 aggagctcagtcgtcaccaccagcagatgatgatgatgcacaagtggatggtccatctga 335 |||||||| || |||||||||| | |||||||||||||| ||||||| ||| ||| | Sbjct: 20316 aggagctccgtactcaccaccagaaaatgatgatgatgcagaagtggactatccgtctca 20257 Query: 336 agatggagca 345 |||||||||| Sbjct: 20256 agatggagca 20247
>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1211_G06 Length = 96421 Score = 52.0 bits (26), Expect = 0.001 Identities = 59/70 (84%) Strand = Plus / Minus Query: 276 aggagctcagtcgtcaccaccagcagatgatgatgatgcacaagtggatggtccatctga 335 |||||||| || |||||||||| | |||||||||||||| ||||||| ||| ||| | Sbjct: 90370 aggagctccgtactcaccaccagaaaatgatgatgatgcagaagtggactatccgtctca 90311 Query: 336 agatggagca 345 |||||||||| Sbjct: 90310 agatggagca 90301
>emb|CR847978.17| Zebrafish DNA sequence from clone CH211-209D14 in linkage group 3, complete sequence Length = 194437 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 226 acaaacgatattctgaaaaatg 247 |||||||||||||||||||||| Sbjct: 33430 acaaacgatattctgaaaaatg 33451
>gb|AC007018.7| Arabidopsis thaliana chromosome 2 clone F5G3 map RNS1, complete sequence Length = 124326 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 ccaccagcagatgatgatgatg 313 |||||||||||||||||||||| Sbjct: 3147 ccaccagcagatgatgatgatg 3126
>gb|AY740087.1| Ostreococcus tauri CONSTANS-like protein gene, complete cds Length = 1475 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 83 ccgacggccgccgcgcgcgccg 104 |||||||||||||||||||||| Sbjct: 40 ccgacggccgccgcgcgcgccg 61
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 gccgacggccgccgcgcgcgc 102 ||||||||||||||||||||| Sbjct: 3173612 gccgacggccgccgcgcgcgc 3173632
>ref|XM_473485.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1554 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 gccgccgcgcgcgccgaaggt 109 ||||||||||||||||||||| Sbjct: 418 gccgccgcgcgcgccgaaggt 438
>ref|XM_387331.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07155.1) partial mRNA Length = 2034 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 gggggcattgcatgttgggca 215 ||||||||||||||||||||| Sbjct: 1239 gggggcattgcatgttgggca 1219
>emb|AL139423.25| Human DNA sequence from clone RP4-734G22 on chromosome 1 Contains the 3' end of the PEX14 gene for peroxisomal biogenesis factor 14, the 3' end of the gene for a novel protein (FLJ34970, FLJ20321, FLJ12223) and two CpG islands, complete sequence Length = 143285 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ccgacggccgccgcgcgcgcc 103 ||||||||||||||||||||| Sbjct: 103531 ccgacggccgccgcgcgcgcc 103551
>emb|AL035701.13|HS8B1 Human DNA sequence from clone RP1-8B1 on chromosome 6p11.2-21.1 Contains the ENPP5 gene for ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function), the ENPP4 gene for ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) (NPP4, KIAA0879) and a novel gene, complete sequence Length = 126956 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 280 gctcagtcgtcaccaccagca 300 ||||||||||||||||||||| Sbjct: 4391 gctcagtcgtcaccaccagca 4371
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 gccgccgcgcgcgccgaaggt 109 ||||||||||||||||||||| Sbjct: 54684 gccgccgcgcgcgccgaaggt 54664
>dbj|D50659.1| Homo sapiens ACTGP9 pseudogene, gamma-actin mRNA-corresponding region Length = 2659 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 gctcagtcgtcaccaccagca 300 ||||||||||||||||||||| Sbjct: 184 gctcagtcgtcaccaccagca 204
>gb|AC012492.9| Homo sapiens BAC clone RP11-224B10 from 2, complete sequence Length = 183584 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 ataaaagcttttgagatttat 141 ||||||||||||||||||||| Sbjct: 64999 ataaaagcttttgagatttat 65019
>ref|NG_001069.1| Homo sapiens actin, gamma pseudogene 9 (ACTGP9) on chromosome 6 Length = 2659 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 gctcagtcgtcaccaccagca 300 ||||||||||||||||||||| Sbjct: 184 gctcagtcgtcaccaccagca 204
>gb|AF350318.1| Amaranthus tricolor copia-like retrotransposon C10, partial sequence Length = 1284 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 atgatgatgcacaagtggatg 325 ||||||||||||||||||||| Sbjct: 907 atgatgatgcacaagtggatg 927
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 gccgccgcgcgcgccgaaggt 109 ||||||||||||||||||||| Sbjct: 28047458 gccgccgcgcgcgccgaaggt 28047438
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cggccgccgcgcgcgccgaa 106 |||||||||||||||||||| Sbjct: 3126092 cggccgccgcgcgcgccgaa 3126111
>ref|XM_705513.1| Candida albicans SC5314 putative U3 snoRNP protein Utp30 (CaO19.154), mRNA Length = 1086 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 caccaccagcagatgatgatgatg 313 |||||||| ||||||||||||||| Sbjct: 110 caccaccaccagatgatgatgatg 133
>ref|XM_705499.1| Candida albicans SC5314 putative U3 snoRNP protein Utp30 (CaO19.7793), mRNA Length = 1110 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 caccaccagcagatgatgatgatg 313 |||||||| ||||||||||||||| Sbjct: 110 caccaccaccagatgatgatgatg 133
>emb|AL772143.31| Zebrafish DNA sequence from clone CH211-158B22 in linkage group 20, complete sequence Length = 73696 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cagcagatgatgatgatgca 315 |||||||||||||||||||| Sbjct: 58816 cagcagatgatgatgatgca 58835
>emb|CR658347.2|CNS0F6Y9 Tetraodon nigroviridis full-length cDNA Length = 810 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 gctgccgacggccgccgcgcgcgc 102 ||||||| |||||||||||||||| Sbjct: 471 gctgccgccggccgccgcgcgcgc 448
>ref|XM_661129.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20231) partial mRNA Length = 4281 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 tgggcaaaccaaggaaacaa 229 |||||||||||||||||||| Sbjct: 1512 tgggcaaaccaaggaaacaa 1531
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 caaggagatgggggcattgcatgt 209 |||||||||||||||||| ||||| Sbjct: 1857214 caaggagatgggggcatttcatgt 1857237
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cgacggccgccgcgcgcgcc 103 |||||||||||||||||||| Sbjct: 200417 cgacggccgccgcgcgcgcc 200398
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cgacggccgccgcgcgcgcc 103 |||||||||||||||||||| Sbjct: 112444 cgacggccgccgcgcgcgcc 112425
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cgacggccgccgcgcgcgcc 103 |||||||||||||||||||| Sbjct: 33791 cgacggccgccgcgcgcgcc 33772
>gb|AC008763.9| Homo sapiens chromosome 19 clone CTD-3214H19, complete sequence Length = 177962 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ggatgcagcaaccaaggagatggg 197 |||||| ||||||||||||||||| Sbjct: 151488 ggatgctgcaaccaaggagatggg 151511
>gb|AE005919.1| Caulobacter crescentus CB15 section 245 of 359 of the complete genome Length = 12011 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gccgacggccgccgcgcgcg 101 |||||||||||||||||||| Sbjct: 11061 gccgacggccgccgcgcgcg 11042
>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0034B05, complete sequence Length = 125655 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 ccctgtgaccccgctgccgacggc 90 ||||||||||||||| |||||||| Sbjct: 33752 ccctgtgaccccgctcccgacggc 33775
>gb|AC097446.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0034B05, complete sequence Length = 175061 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 ccctgtgaccccgctgccgacggc 90 ||||||||||||||| |||||||| Sbjct: 148813 ccctgtgaccccgctcccgacggc 148836
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 ccctgtgaccccgctgccgacggc 90 ||||||||||||||| |||||||| Sbjct: 3376968 ccctgtgaccccgctcccgacggc 3376991
>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone BACR03K23, complete sequence Length = 160346 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 caccaccagcagatgatgatgatg 313 |||||||||||||||| ||||||| Sbjct: 145815 caccaccagcagatgaggatgatg 145792
>gb|AC084537.1|CBRG26I17 Caenorhabditis briggsae cosmid G26I17, complete sequence Length = 19144 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cagcagatgatgatgatgca 315 |||||||||||||||||||| Sbjct: 11069 cagcagatgatgatgatgca 11050
>gb|AC008812.7|AC008812 Homo sapiens chromosome 19 clone CTD-2102F19, complete sequence Length = 143619 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ggatgcagcaaccaaggagatggg 197 |||||| ||||||||||||||||| Sbjct: 23786 ggatgctgcaaccaaggagatggg 23809
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cgacggccgccgcgcgcgcc 103 |||||||||||||||||||| Sbjct: 170993 cgacggccgccgcgcgcgcc 170974
>emb|AL162507.1|ATT12C14 Arabidopsis thaliana DNA chromosome 3, BAC clone T12C14 Length = 77720 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aaaagcttttgagatttatt 142 |||||||||||||||||||| Sbjct: 14273 aaaagcttttgagatttatt 14292
>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete sequence Length = 266851 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 caccaccagcagatgatgatgatg 313 |||||||||||||||| ||||||| Sbjct: 238158 caccaccagcagatgaggatgatg 238135
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cgacggccgccgcgcgcgcc 103 |||||||||||||||||||| Sbjct: 2540357 cgacggccgccgcgcgcgcc 2540338
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 ccgctgccgacggccgccgcgcgc 100 |||||||||||||| ||||||||| Sbjct: 1531118 ccgctgccgacggcggccgcgcgc 1531095
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 ccctgtgaccccgctgccgacggc 90 ||||||||||||||| |||||||| Sbjct: 3376889 ccctgtgaccccgctcccgacggc 3376912
>emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, complete sequence Length = 124954 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 aaaaatgcgtcagatagcaa 260 |||||||||||||||||||| Sbjct: 77634 aaaaatgcgtcagatagcaa 77653
>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete sequence Length = 242530 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gacggccgccgcgcgcgccg 104 |||||||||||||||||||| Sbjct: 74724 gacggccgccgcgcgcgccg 74705 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,708,802 Number of Sequences: 3902068 Number of extensions: 3708802 Number of successful extensions: 87472 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86554 Number of HSP's gapped (non-prelim): 918 length of query: 379 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 357 effective length of database: 17,147,199,772 effective search space: 6121550318604 effective search space used: 6121550318604 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)