ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal11h20 |
|---|---|
| Clone Library Name | barley_pub |
>CY561_PONPY (Q5RCZ2) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 131 bits (330), Expect = 1e-30 Identities = 66/153 (43%), Positives = 94/153 (61%) Frame = +1 Query: 127 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 306 W +RGG+A+E+D L FN HP+ M+IG I L +A++VY+V TTK++H +L Sbjct: 34 WLGLYRGGIAWESD---LQFNAHPLCMVIGLIFLQGDALLVYRVFRNEAKRTTKVLHGLL 90 Query: 307 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAP 486 H ALV+ VG+ F H + G A+LYSLHSW GI LY +QW+ GF F FP A+ Sbjct: 91 HIFALVIALVGLVAVFDYHRKEGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASF 150 Query: 487 NVRKGALPWHVLLGIFVYILALATAELGFLEKL 585 ++R P H+ G +++L++ TA LG E L Sbjct: 151 SLRSRYRPQHIFFGATIFLLSVGTALLGLKEAL 183
>CY561_BOVIN (P10897) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 131 bits (329), Expect = 2e-30 Identities = 65/153 (42%), Positives = 96/153 (62%) Frame = +1 Query: 127 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 306 W +RGG+A+E+ L FNVHP+ M+IG + L +A++VY+V TTK++H +L Sbjct: 35 WLGMYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKVLHGLL 91 Query: 307 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAP 486 H A V+ VG+ F++H + G A+LYSLHSW GI +L+ QW+ GF F FP A+ Sbjct: 92 HVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVGFSFFLFPGASF 151 Query: 487 NVRKGALPWHVLLGIFVYILALATAELGFLEKL 585 ++R P HV G +++L++ATA LG E L Sbjct: 152 SLRSRYRPQHVFFGAAIFLLSVATALLGLKEAL 184
>CY561_HUMAN (P49447) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 130 bits (328), Expect = 2e-30 Identities = 66/153 (43%), Positives = 93/153 (60%) Frame = +1 Query: 127 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 306 W +RGG+A+E+D L FN HP+ M+IG I L A++VY+V TTK++H +L Sbjct: 34 WLGLYRGGIAWESD---LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEAKRTTKVLHGLL 90 Query: 307 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAP 486 H ALV+ VG+ F H + G A+LYSLHSW GI LY +QW+ GF F FP A+ Sbjct: 91 HIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASF 150 Query: 487 NVRKGALPWHVLLGIFVYILALATAELGFLEKL 585 ++R P H+ G +++L++ TA LG E L Sbjct: 151 SLRSRYRPQHIFFGATIFLLSVGTALLGLKEAL 183
>CY561_SHEEP (Q95204) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 130 bits (328), Expect = 2e-30 Identities = 65/153 (42%), Positives = 96/153 (62%) Frame = +1 Query: 127 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 306 W +RGG+A+E+ L FNVHP+ M+IG + L +A++VY+V TTK++H +L Sbjct: 35 WLGMYRGGIAWESA---LQFNVHPLCMVIGLVFLQGDALLVYRVFRNEAKRTTKVLHGLL 91 Query: 307 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAP 486 H A V+ VG+ F++H + G A+LYSLHSW GI +L+ QW+ GF F FP A+ Sbjct: 92 HVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVGFSFFLFPGASF 151 Query: 487 NVRKGALPWHVLLGIFVYILALATAELGFLEKL 585 ++R P HV G +++L++ATA LG E L Sbjct: 152 SLRSRYRPQHVFFGAAIFLLSVATALLGLKEAL 184
>CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561)| Length = 250 Score = 128 bits (321), Expect = 1e-29 Identities = 63/153 (41%), Positives = 93/153 (60%) Frame = +1 Query: 127 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 306 W +RGG+A+E+ +L FNVHP+ M+IG I L +A++VY+V TTK++H +L Sbjct: 33 WLGLYRGGIAWES---SLQFNVHPLCMVIGMIFLQGDALLVYRVFRREAKRTTKILHGLL 89 Query: 307 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAP 486 H A ++ VG+ F H + G A+LYSLHSW GI LY +QW+ GF F FP A+ Sbjct: 90 HVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASF 149 Query: 487 NVRKGALPWHVLLGIFVYILALATAELGFLEKL 585 ++R P H+ G +++ ++ TA LG E L Sbjct: 150 SLRSRYRPQHIFFGATIFLFSVGTALLGLKEAL 182
>CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 126 bits (316), Expect = 5e-29 Identities = 64/153 (41%), Positives = 93/153 (60%) Frame = +1 Query: 127 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 306 W +RGG+A+E+ L FNVHP+ M+IG + L +A++VY+V TTK++H +L Sbjct: 35 WLGAYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKILHGLL 91 Query: 307 HAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAP 486 H +A V+ VG+ F H + GIA+LYSLHSW GI L+ QW+ G F FP A+ Sbjct: 92 HVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLFLAQWLVGLGFFLFPGASF 151 Query: 487 NVRKGALPWHVLLGIFVYILALATAELGFLEKL 585 ++R P HV G +++L++ TA LG E L Sbjct: 152 SLRSRYRPQHVFFGAAIFLLSVGTALLGLKEAL 184
>CY561_XENLA (Q91577) Cytochrome b561 (Cytochrome b-561)| Length = 247 Score = 120 bits (300), Expect = 4e-27 Identities = 58/136 (42%), Positives = 83/136 (61%) Frame = +1 Query: 178 LIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVLHAIALVLGAVGIYCAFK 357 L FNVHP+ M++G + L EA++VY+V +TK++H VLH +ALV+ VG+ F+ Sbjct: 48 LQFNVHPLCMVLGMVFLCGEALLVYRVFRHETKRSTKILHGVLHIMALVISLVGVIAVFQ 107 Query: 358 NHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALPWHVLLGIFV 537 H G ++YSLHSW GI T +LY +QWI GF FF P A R P H G + Sbjct: 108 YHQANGYPDMYSLHSWCGIVTFTLYILQWIIGFSLFFIPGVAFTYRSQFKPLHEFFGRAL 167 Query: 538 YILALATAELGFLEKL 585 ++ ++AT+ LG EK+ Sbjct: 168 FLSSIATSLLGLTEKM 183
>CY561_CAEEL (P34465) Putative cytochrome b561 (Cytochrome b-561)| Length = 266 Score = 108 bits (269), Expect = 1e-23 Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 8/160 (5%) Frame = +1 Query: 127 WCIHFRGGLAFEADNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVL 306 W F G A+ D + FN HP M++G + L EA++VY+V +K +H++L Sbjct: 42 WMSKFESGFAWNED-PDKEFNYHPTFMIMGMVFLFGEALLVYRVFRNERKKFSKTLHVIL 100 Query: 307 HAIALVLGAVGIYCAFKNHN--------ETGIANLYSLHSWLGIGTISLYGIQWIFGFLT 462 H+ LV + + F HN I NL SLHSW+G+ + LY Q+I GF+T Sbjct: 101 HSCVLVFMLMALKAVFDYHNLHKDPSGNPAPIVNLVSLHSWIGLSVVILYFAQYIVGFIT 160 Query: 463 FFFPKAAPNVRKGALPWHVLLGIFVYILALATAELGFLEK 582 +FFP +R+ +P+H + G+ ++I T +G E+ Sbjct: 161 YFFPGMPIPIRQLVMPFHQMFGVLIFIFVSITVAMGISER 200
>C56D1_HUMAN (Q8N8Q1) Cytochrome b561 domain-containing protein 1| Length = 229 Score = 56.6 bits (135), Expect = 5e-08 Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 5/135 (3%) Frame = +1 Query: 181 IFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVLH----AIALVLGAVGIYC 348 +F+ HPV M + F + +EAI+++ ++ ++ + LH +A++ A+G+ Sbjct: 51 LFSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGF 110 Query: 349 AFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALP-WHVLL 525 + + + +L S HSW+G T+ +Q + G L P+AA R L +H+ Sbjct: 111 IISSRTRSELPHLVSWHSWVGALTLLATAVQALCG-LCLLCPRAARVSRVARLKLYHLTC 169 Query: 526 GIFVYILALATAELG 570 G+ VY++A T LG Sbjct: 170 GLVVYLMATVTVLLG 184
>C56D2_HUMAN (O14569) Cytochrome b561 domain-containing protein 2 (Putative| tumor suppressor protein 101F6) Length = 222 Score = 52.0 bits (123), Expect = 1e-06 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Frame = +1 Query: 181 IFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTK----LIHLVLHAIALVLGAVGIYC 348 +F+ HPVLM + F L +EA++V+ ++ H ++ H VL +AL+ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGL 103 Query: 349 AFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALP-WHVLL 525 + + G A+L + H G+ + G+Q G + +PK P L +H Sbjct: 104 VILHKEQLGKAHLVTRHGQAGLLAVLWAGLQ-CSGGVGLLYPKLLPRWPLAKLKLYHATS 162 Query: 526 GIFVYILALATAELG 570 G+ Y+L A+ LG Sbjct: 163 GLVGYLLGSASLLLG 177
>C56D2_MOUSE (Q9WUE3) Cytochrome b561 domain-containing protein 2 (Putative| tumor suppressor protein 101F6) Length = 222 Score = 50.8 bits (120), Expect = 3e-06 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Frame = +1 Query: 181 IFNVHPVLMLIGFIILGSEAIMVY----KVLPTVNHDTTKLIHLVLHAIALVLGAVGIYC 348 +F+ HPVLM + F L +EA++++ +L +++ H VL +AL+ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGLGL 103 Query: 349 AFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALP-WHVLL 525 + + G A+L + H G+ + G+Q G + +PK P L +H Sbjct: 104 VILHKEQLGKAHLTTRHGQAGLLAVLWAGLQ-CSGGMGLLYPKLLPRWPLAKLKLYHATS 162 Query: 526 GIFVYILALATAELG 570 G+ Y+L A+ LG Sbjct: 163 GLVGYLLGSASLLLG 177
>C56D2_BOVIN (Q5E965) Cytochrome b561 domain-containing protein 2| Length = 222 Score = 49.7 bits (117), Expect = 6e-06 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Frame = +1 Query: 181 IFNVHPVLMLIGFIILGSEAIMVY----KVLPTVNHDTTKLIHLVLHAIALVLGAVGIYC 348 +F+ HPVLM + F L +EA++V+ +L +++ H VL +AL+ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLVFSPESSLLRSLSRKGRARCHWVLQLLALLCALLGLGL 103 Query: 349 AFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALP-WHVLL 525 + + G A+L + H G+ + G+Q G + +PK P L +H Sbjct: 104 VILHKEQLGKAHLATWHGRAGLLAVLWAGLQ-CSGGVGLLYPKLLPRWPLAKLKLYHATS 162 Query: 526 GIFVYILALATAELG 570 G+ Y+L A+ LG Sbjct: 163 GLVGYLLGGASLLLG 177
>C56D2_RAT (Q641Y1) Cytochrome b561 domain-containing protein 2| Length = 222 Score = 48.9 bits (115), Expect = 1e-05 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 5/135 (3%) Frame = +1 Query: 181 IFNVHPVLMLIGFIILGSEAIMVY----KVLPTVNHDTTKLIHLVLHAIALVLGAVGIYC 348 +F+ HPVLM + F L +EA++++ +L +++ H VL +AL+ +G+ Sbjct: 44 LFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGLGL 103 Query: 349 AFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALP-WHVLL 525 + + G A+L + H G+ + G+Q G + +PK P L +H Sbjct: 104 VILHKEQLGKAHLATRHGQAGLLAVLWAGLQ-CSGGVGLLYPKLLPRWPLAKLKLYHATS 162 Query: 526 GIFVYILALATAELG 570 G+ Y+L + LG Sbjct: 163 GLVGYLLGSTSLLLG 177
>YRN9_CAEEL (Q09609) Hypothetical protein R07B1.9| Length = 770 Score = 33.5 bits (75), Expect = 0.47 Identities = 19/66 (28%), Positives = 31/66 (46%) Frame = +1 Query: 301 VLHAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKA 480 +L+ I +V G +G Y ++NH +LY + +G T Y GF T+ KA Sbjct: 48 LLNFIHVVTGCIGFYSLWRNHGSIVTKSLYLVSFVIGFATAVFY------GFTTYRVVKA 101 Query: 481 APNVRK 498 N+ + Sbjct: 102 GENLNQ 107
>PTTBC_ECOLI (P36672) PTS system trehalose-specific EIIBC component (EIIBC-Tre)| (EII-Tre) [Includes: Trehalose-specific phosphotransferase enzyme IIB component (EC 2.7.1.69) (PTS system trehalose-specific EIIB component); Trehalose permease IIC component Length = 473 Score = 32.3 bits (72), Expect = 1.0 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +1 Query: 298 LVLHAIALVLGAVGIYCAFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGF 456 + L IA +GI + + HNE I+ ++ +WLG+ ++YGI + F Sbjct: 345 IALSNIAQGSAVIGIIISSRKHNEREISVPAAISAWLGVTEPAMYGINLKYRF 397
>MPRF_STAXY (Q93QY7) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 841 Score = 31.6 bits (70), Expect = 1.8 Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 2/139 (1%) Frame = +1 Query: 166 DNKNLIFNVHPVLMLIGFIILGSEAIMVYKVLPTVNHDTTKL--IHLVLHAIALVLGAVG 339 D+K +F+ ++++ L +I+V + ++H T + +++ +AL L Sbjct: 121 DDKKALFHTISIVLISMLTGLSLLSILVVIHVFDISHIFTPYPWVKWLMYVVALFLPIFV 180 Query: 340 IYCAFKNHNETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNVRKGALPWHV 519 ++ K +T H LG+ + G++W L + A V+ +P+ Sbjct: 181 VFTIIKPVQKT--------HRLLGVYCTIVSGVEWFVAALVLYMSMAIVGVQ---IPFAT 229 Query: 520 LLGIFVYILALATAELGFL 576 +GIF ILA + + F+ Sbjct: 230 FMGIF--ILAALSGLISFI 246
>CP4CU_BLAGE (Q964T1) Cytochrome P450 4c21 (EC 1.14.14.1) (CYPIVC21)| Length = 501 Score = 30.4 bits (67), Expect = 4.0 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 16/95 (16%) Frame = +1 Query: 262 PTVNHDTTKLIHLVLHAIALVLGAVGIYCAFKNHNETGIANLYSL-HSWLGIGTISLYGI 438 P VN + +LI +VL L+ A LY L HSWLG G ++ G Sbjct: 80 PFVNISSPELIEVVLRNTQLIDKAF----------------LYDLFHSWLGTGLLTSSGA 123 Query: 439 QW---------------IFGFLTFFFPKAAPNVRK 498 +W + GF+T F K+ VRK Sbjct: 124 KWHQHRKIITPTFHFSILEGFITIFAEKSEILVRK 158
>Y241_CHLMU (Q9PL67) Hypothetical UPF0056 protein TC0241| Length = 204 Score = 30.4 bits (67), Expect = 4.0 Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Frame = +1 Query: 196 PVLMLIGFIILGSEAIMVYKVLP----TVNHDTTKLIHLVLHAIALVLGAVGIYCAFKNH 363 P L G I+LGS AI + K LP T + + I L A ++ G I H Sbjct: 71 PAFQLTGGILLGSLAINMMKALPSQEETFDQYEDEPIFYPL-AFPVITGPATITSTL-GH 128 Query: 364 NETGIANLYSLHSWLGIGTISLYGIQWIFGFLTFFFPKAAPNV--RKGALPWHVLLGIFV 537 E GI L +G I L W F +T FF + + + G L L GI + Sbjct: 129 MEEGI-----FPKELVLGAIML---AWAFSLITLFFSSSINRLFGQMGLLALERLFGISL 180 Query: 538 YILA 549 ++A Sbjct: 181 ALMA 184
>SYR_PSESM (Q87V03) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 578 Score = 30.0 bits (66), Expect = 5.2 Identities = 18/80 (22%), Positives = 36/80 (45%) Frame = -3 Query: 468 EEGQESKYPLNTI*RNCSYSKPRMQTVQVRNSSFIVILESTVYPDRTEHKRNSMEY*MDQ 289 +E QE Y L P++ ++R+ + V + + Y D ++H+ + + DQ Sbjct: 397 DEAQERAYTL------VKEKNPQVAEAELRSIAKAVGISAVKYADLSKHRASDYSFNFDQ 450 Query: 288 LSCIMVHRRKYLVYHYSFTA 229 + + YL+Y Y+ A Sbjct: 451 MLSFEGNTAPYLLYAYTRVA 470
>Y2119_MYCPA (Q73Y38) Hypothetical UPF0324 membrane protein MAP_2119| Length = 412 Score = 29.6 bits (65), Expect = 6.7 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Frame = +1 Query: 199 VLMLIGFIILGSEAIMVYKVLPTVNHDTTKLIHLVLHAIAL---VLGAVGIYCAFKNHNE 369 +L+LIG +LG A + + L H T I VL AI + + VG++ F+ Sbjct: 69 ILLLIGVGVLGKYAQIWWNALAKHEHWTVPDIEYVLWAIVIGLVITNTVGLHPIFR---- 124 Query: 370 TGIANLYSLHSWLGIGTISLYGIQWIFG 453 + + WL G ++L G +++ G Sbjct: 125 ---PGVLTYEFWLKAGIVAL-GSRFVLG 148
>RBD2_ASPFU (Q4WLP9) Rhomboid protein 2 (EC 3.4.21.-)| Length = 272 Score = 29.6 bits (65), Expect = 6.7 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%) Frame = +1 Query: 217 FIILGSEAIMVYKVLPTVNHDTTKLIHLVLHAIALVLGAVGIYCAFKNHNETGIANLYSL 396 F++LGSEAI +K P + TTK+ A L ++ + N + G + + Sbjct: 142 FLLLGSEAIKTFKSNPYFSLGTTKIPTWTSPLFACALVSIFV----PNTSFLGHLSAIII 197 Query: 397 HSWLGIGTISLYG-----IQWIFGFLTFFFPKAAPNVRKGALPWHVLLGIFVY----ILA 549 LG+G + ++ ++WI G L G LP +V + Y +L Sbjct: 198 GYLLGLGYLKVFVPPEKILRWIEGKLNLL----------GRLPHYVSVDQKTYGRYGVLP 247 Query: 550 LATAELG 570 ATA +G Sbjct: 248 TATAAVG 254
>HSP42_YEAST (Q12329) Heat shock protein 42 (42 kDa heat shock protein)| Length = 375 Score = 29.3 bits (64), Expect = 8.8 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -3 Query: 264 RKYLVYHYSFTAKNNKANQHKNRMN 190 R+Y Y++ TA+NN+ NQ N +N Sbjct: 119 RRYPSYYHCNTARNNRTNQQANSLN 143 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,444,392 Number of Sequences: 219361 Number of extensions: 1582163 Number of successful extensions: 4796 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4660 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4792 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
