Clone Name	baal11f15
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	1152	0.0
2	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	918	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	910	0.0
4	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	698	0.0
5	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	674	0.0
6	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	664	0.0
7	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	521	e-145
8	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	476	e-131
9	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
10	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
11	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
12	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
13	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	135	2e-28
14	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
15	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
16	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	8e-28
17	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	133	8e-28
18	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	8e-28
19	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
20	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	133	8e-28
21	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	129	1e-26
22	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	125	2e-25
23	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	123	7e-25
24	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	123	7e-25
25	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	3e-24
26	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	119	1e-23
27	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	103	7e-19
28	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	3e-18
29	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	98	4e-17
30	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	96	2e-16
31	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	2e-16
32	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	2e-16
33	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	88	4e-14
34	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	1e-11
35	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
36	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
37	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	68	4e-08
38	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	60	9e-06
39	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	60	9e-06
40	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	60	9e-06
41	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	1e-04
42	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	52	0.002
43	emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase	52	0.002
44	gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence	50	0.009
45	gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 gen...	50	0.009
46	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	48	0.035
47	gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, part...	48	0.035
48	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	48	0.035
49	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	44	0.55
50	emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosph...	44	0.55
51	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.55
52	emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c...	44	0.55
53	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	44	0.55
54	gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	2.2
55	emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom...	42	2.2
56	gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	2.2
57	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
58	gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet...	42	2.2
59	emb|Y10657.1|CLRCAGENE C.littorale rca gene	42	2.2
60	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	2.2
61	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	2.2
62	gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	2.2
63	gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	8.6
64	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	8.6
65	gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	8.6
66	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	8.6
67	gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	8.6
68	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	8.6
69	emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding prot...	40	8.6
70	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	8.6
71	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	8.6
72	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	8.6
73	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	8.6
74	gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc...	40	8.6
75	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	8.6
76	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	8.6
77	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	8.6
78	dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138	40	8.6
79	gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	8.6
80	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	8.6
81	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	8.6
82	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	8.6
83	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	8.6
84	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	8.6
85	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	8.6
86	ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	8.6
87	gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	8.6
88	gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23...	40	8.6
89	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	8.6

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score = 1152 bits (581), Expect = 0.0
 Identities = 625/633 (98%), Gaps = 5/633 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    accgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccaggacaatcc 60
            |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1075 accgacaatgtctgtgacgagtctgtcgtaaagatcgtcgacaccttcccaggacaatcc 1134

                                                                        
Query: 61   attgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 attgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtc 1194

                                                                        
Query: 121  ggctctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1195 ggctctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtg 1254

                                                                        
Query: 181  accttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 accttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtc 1314

                                                                        
Query: 241  caggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagct 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1315 caggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagct 1374

                                                                        
Query: 301  ctgggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctc 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1375 ctgggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctc 1434

                                                                        
Query: 361  catac-acacccaccatctcttgctgcataggaggaggtaaaggagcacagcaaggtact 419
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1435 catacaacacccaccatctcttgctgcataggaggaggtaaaggagcacagcaaggtact 1494

                                                                        
Query: 420  ttgcccg-tgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaag 478
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1495 ttgcccgatgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaag 1554

                                                                        
Query: 479  gagcgacg-acggcagctgcctttacaccttttaagcatgccacttttaatatctgatgt 537
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1555 gagcgacgaacggcagctgcctttacaccttttaagcatgccacttttaatatctgatgt 1614

                                                                        
Query: 538  tttacctac-ctaagtccgcatcgcatccaagcgattgctgggcatgttttgttaatata 596
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1615 tttacctacactaagtccgcatcgcatccaagcgattgctgggcatgttttgttaatata 1674

                                             
Query: 597  tctctaaat-atattgagtatacccatttggca 628
            ||||||||| |||||| ||||||||||||||||
Sbjct: 1675 tctctaaataatattgtgtatacccatttggca 1707

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  918 bits (463), Expect = 0.0
 Identities = 592/632 (93%), Gaps = 11/632 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   accgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccaggacaatcc 60
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 145 accgacaatgtcagcgacgagtccgtcgtcaagatcgtcgacaccttcccaggacaatcc 204

                                                                       
Query: 61  attgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtc 120
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 205 atcgactttttcggtgctctgcgtgctcgggtgtacgacgacgaggtgcgcaagtgggtg 264

                                                                       
Query: 121 ggctctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtg 180
             ||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct: 265 acctctaccggtatcgagaacattggcaagaagctggtgaactcgcgggacggaccagtg 324

                                                                       
Query: 181 accttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtc 240
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 acctttgagcagccaaagatgacagtggagaagctgctagagtacgggcacatgctcgtc 384

                                                                       
Query: 241 caggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagct 444

                                                                       
Query: 301 ctgggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctc 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 445 ctgggtgatgctaaccaggatgcgatgaagactggtaccttctacggttagaacattctc 504

                                                                       
Query: 361 catacacacccaccatctcttgctgcataggaggaggtaaaggagcacagcaaggtactt 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 catacacacccaccatctcttgctgcataggaggaggtaaaggggcacagcaaggtactt 564

                                                                       
Query: 421 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
           |||| || |||| ||| ||||||||||| | ||||||||||| |||||||||||| ||||
Sbjct: 565 tgcctgtaccggcaggatgcaccgaccagactgccaagaacttcgacccaacggcgagga 624

                                                                       
Query: 481 gcgacgacggcagctgcctttacaccttttaagcatgccacttttaatatctgatgtttt 540
           | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 625 gtgacgacggcagctgcctttacaccttttaagcatgcca-atttaatatctgatgtttt 683

                                                                       
Query: 541 acc-----tacctaagt-ccgcatcgcatccaagcgattgctgggcatgttttgttaata 594
           | |     ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atcctttgtacctaagtaccgcatcgcatccaagcgattgctgggcatgttttgttaata 743

                                           
Query: 595 tatctctaaatatattgagtatacccatttgg 626
           ||    |||| |||||||||||||| ||||||
Sbjct: 744 ta----taaagatattgagtatacctatttgg 771

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  910 bits (459), Expect = 0.0
 Identities = 569/603 (94%), Gaps = 7/603 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    accgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccaggacaatcc 60
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 995  accgacaatgtcagcgacgagtccgtcgtcaagatcgtcgacaccttcccaggacaatcc 1054

                                                                        
Query: 61   attgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtc 120
            || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 1055 atcgactttttcggtgctctgcgtgctcgggtgtacgacgacgaggtgcgcaagtgggtg 1114

                                                                        
Query: 121  ggctctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtg 180
              ||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct: 1115 acctctaccggtatcgagaacattggcaagaagctggtgaactcgcgggacggaccagtg 1174

                                                                        
Query: 181  accttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtc 240
            ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1175 acctttgagcagccaaagatgacagtggagaagctgctagagtacgggcacatgctcgtc 1234

                                                                        
Query: 241  caggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagct 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1235 caggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagct 1294

                                                                        
Query: 301  ctgggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctc 360
            |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 1295 ctgggtgatgctaaccaggatgcgatgaagactggtaccttctacggttagaacattctc 1354

                                                                        
Query: 361  catacacacccaccatctcttgctgcataggaggaggtaaaggagcacagcaaggtactt 420
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1355 catacacacccaccatctcttgctgcataggaggaggtaaaggggcacagcaaggtactt 1414

                                                                        
Query: 421  tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
            |||| || |||| ||| ||||||||||| | ||||||||||| |||||||||||| ||||
Sbjct: 1415 tgcctgtaccggcaggatgcaccgaccagactgccaagaacttcgacccaacggcgagga 1474

                                                                        
Query: 481  gcgacgacggcagctgcctttacaccttttaagcatgccacttttaatatctgatgtttt 540
            | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 1475 gtgacgacggcagctgcctttacaccttttaagcatgcca-atttaatatctgatgtttt 1533

                                                                        
Query: 541  acc-----tacctaagt-ccgcatcgcatccaagcgattgctgggcatgttttgttaata 594
            | |     ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 atcctttgtacctaagtaccgcatcgcatccaagcgattgctgggcatgttttgttaata 1593

               
Query: 595  tat 597
            |||
Sbjct: 1594 tat 1596

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  698 bits (352), Expect = 0.0
 Identities = 533/590 (90%), Gaps = 9/590 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    accgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccaggacaatcc 60
            |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 1006 accgacaacgtcagcgacgagtctgtcgtcaagatcgtcgacacnttcccaggacagtcc 1065

                                                                        
Query: 61   attgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtc 120
            || ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 1066 atcgacttcttcggtgctctgcgtgctcgggtgtacgacgttgaggtgcgcaagtgggtg 1125

                                                                        
Query: 121  ggctctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtg 180
               || |||||||| |||||||| ||||||||||||||||||||||||||||| ||||| 
Sbjct: 1126 tcgtccaccggaattgagaacatcggcaagaggctggtgaactcgcgggacggacccgtc 1185

                                                                        
Query: 181  accttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtc 240
            |||||||||||||| |||||||| || |||||| |||| |||||||| |||||||| |||
Sbjct: 1186 accttcgagcagcccaagatgacggtggagaagttgctggagtacggccacatgcttgtc 1245

                                                                        
Query: 241  caggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagct 300
            ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1246 caggagcaggacaatgtcaagcgtgtgcagcttgcggacacttacatgagccaggcagct 1305

                                                                        
Query: 301  ctgggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctc 360
            ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| | ||| 
Sbjct: 1306 ctgggtgatgcgaacaaggatgccatgaagactggttccttctacggttagaacactctt 1365

                                                                        
Query: 361  catacacacccaccatctcttgctgcataggaggaggtaaaggagcacagcaaggtactt 420
            |||  |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1366 cat--acacccaccatctcttgctgcataggaggaggtaaaggagcacaacaaggcactt 1423

                                                                        
Query: 421  tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
            |||| |||||||||||||| |||||||   |||||||||||| ||||||||| || ||||
Sbjct: 1424 tgcctgtgccggaaggttgtaccgaccgggatgccaagaacttcgacccaaccgcgagga 1483

                                                                        
Query: 481  gcgacgacggcagctgcctttacaccttttaagcatgccacttttaata-tctgatgttt 539
            |||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct: 1484 gcgacgacggcagctgcctttacaccttttaagcatgccactttaattattctgatgttt 1543

                                                              
Query: 540  tac-----ctacctaag-tccgcatcgcatccaagcgattgctgggcatg 583
             ||      ||||||||  ||||||||||| ||||||| |||||||||||
Sbjct: 1544 cactctttgtacctaagcaccgcatcgcatacaagcgactgctgggcatg 1593

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  674 bits (340), Expect = 0.0
 Identities = 346/348 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    accgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccaggacaatcc 60
            |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 820  accgacaatgtctgtgacgagtctgtcgtaaagatcgtcgacaccttcccaggacaatcc 879

                                                                        
Query: 61   attgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  attgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtc 939

                                                                        
Query: 121  ggctctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  ggctctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtg 999

                                                                        
Query: 181  accttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 accttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtc 1059

                                                                        
Query: 241  caggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagct 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 caggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagct 1119

                                                            
Query: 301  ctgggtgatgctaaccaggatgcgatgaagactggttccttctacggt 348
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 ctgggtgatgctaaccaggatgcgatgaagactggttccttctacggt 1167



 Score =  448 bits (226), Expect = e-122
 Identities = 229/230 (99%)
 Strand = Plus / Plus

                                                                        
Query: 396  ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 1224

                                                                        
Query: 456  aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 1284

                                                                        
Query: 516  tgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgattgc 575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 tgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgattgc 1344

                                                              
Query: 576  tgggcatgttttgttaatatatctctaaatatattgagtatacccatttg 625
            |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1345 tgggcatgttttgttaatatatctctaaatatattgtgtatacccatttg 1394

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  664 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Plus

                                                                        
Query: 64   gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7021 gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 7080

                                                                        
Query: 124  tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7081 tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 7140

                                                                        
Query: 184  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7141 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 7200

                                                                        
Query: 244  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7201 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 7260

                                                                        
Query: 304  ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7261 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 7320

                                               
Query: 364  acacacccaccatctcttgctgcataggaggaggt 398
            |||||||||||||||||||||||||||||||||||
Sbjct: 7321 acacacccaccatctcttgctgcataggaggaggt 7355



 Score =  458 bits (231), Expect = e-125
 Identities = 234/235 (99%)
 Strand = Plus / Plus

                                                                        
Query: 394  gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7523 gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 7582

                                                                        
Query: 454  ccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaag 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7583 ccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaag 7642

                                                                        
Query: 514  catgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgatt 573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7643 catgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgatt 7702

                                                                   
Query: 574  gctgggcatgttttgttaatatatctctaaatatattgagtatacccatttggca 628
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 7703 gctgggcatgttttgttaatatatctctaaatatattgtgtatacccatttggca 7757



 Score =  127 bits (64), Expect = 5e-26
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    accgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccaggacaatcc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6817 accgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccaggacaatcc 6876

                
Query: 61   attg 64
            ||||
Sbjct: 6877 attg 6880



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                        
Query: 40   gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 99
            ||||||||||| || || ||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct: 3729 gacaccttcccggggcagtccatcgacttcttcggcgcgctgcgggcacgggtgtacgac 3788

                                    
Query: 100  gatgaggtgcgcaagtgggtcggc 123
            || |||||||||||||||||||||
Sbjct: 3789 gacgaggtgcgcaagtgggtcggc 3812



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 184  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 243
            ||||| ||||| ||||||||  | ||||||||  | |||||||| |||||||| ||||||
Sbjct: 3873 ttcgaccagcccaagatgaccatagagaagctcatggagtacggccacatgctggtccag 3932

                                         
Query: 244  gagcaggacaatgtcaagcgtgtgcagct 272
            |||||||| || |||||||||||||||||
Sbjct: 3933 gagcaggagaacgtcaagcgtgtgcagct 3961

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  521 bits (263), Expect = e-145
 Identities = 296/307 (96%)
 Strand = Plus / Plus

                                                                       
Query: 64  gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |
Sbjct: 2   gactttttcggtgctctgcgtgctcgggtgtacgacgacgaggtgcgcaagtgggtgacc 61

                                                                       
Query: 124 tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 183
           |||||||| ||||||||||||||||||| ||| ||||||||||||||||| || ||||||
Sbjct: 62  tctaccggtatcgagaacattggcaagaagcttgtgaactcgcgggacggaccagtgacc 121

                                                                       
Query: 184 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 243
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tttgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 181

                                                                       
Query: 244 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 241

                                                                       
Query: 304 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 363
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 242 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaacattctccat 301

                  
Query: 364 acacacc 370
           |||||||
Sbjct: 302 acacacc 308

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  476 bits (240), Expect = e-131
 Identities = 321/348 (92%)
 Strand = Plus / Plus

                                                                        
Query: 1    accgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccaggacaatcc 60
            |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1016 accgacaacgtcagcgacgagtctgtcgtcaagatcgtcgacaccttcccaggacagtcc 1075

                                                                        
Query: 61   attgactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtc 120
            || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 1076 atcgacttcttcggtgctctgcgtgctcgggtgtacgacgacgaggtgcgcaagtgggtg 1135

                                                                        
Query: 121  ggctctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtg 180
               || |||||||| |||||||| ||||||||||||||||||||||||||||| ||||| 
Sbjct: 1136 tcgtccaccggaattgagaacatcggcaagaggctggtgaactcgcgggacggacccgtc 1195

                                                                        
Query: 181  accttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtc 240
            |||||||||||||| |||||||| || |||||| |||| |||||||| |||||||| |||
Sbjct: 1196 accttcgagcagcccaagatgacggtggagaagttgctggagtacggccacatgcttgtc 1255

                                                                        
Query: 241  caggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagct 300
            ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1256 caggagcaggacaatgtcaagcgtgtgcagcttgcggacacttacatgagccaggcagct 1315

                                                            
Query: 301  ctgggtgatgctaaccaggatgcgatgaagactggttccttctacggt 348
            ||||||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct: 1316 ctgggtgatgcgaacaaggatgccatgaagactggttccttctacggt 1363



 Score =  176 bits (89), Expect = 6e-41
 Identities = 119/129 (92%)
 Strand = Plus / Plus

                                                                        
Query: 396  ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 455
            |||||||||||||| ||||| |||||||| |||||||||||||| |||||||   |||||
Sbjct: 1361 ggtaaaggagcacaacaaggcactttgcctgtgccggaaggttgtaccgaccgggatgcc 1420

                                                                        
Query: 456  aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 515
            ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 1421 aagaacttcgacccaaccgcgaggagcgacgacggcagctgcctttacaccttttaagca 1480

                     
Query: 516  tgccacttt 524
            |||||||||
Sbjct: 1481 tgccacttt 1489

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 389  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 445
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1385 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1444

                                                                        
Query: 446  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 505
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1445 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1504

                      
Query: 506  cttttaagca 515
            ||||||||||
Sbjct: 1505 cttttaagca 1514



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 136  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1097 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1156

                                                                        
Query: 196  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1157 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1216

                                                                        
Query: 256  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1217 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1276

                                              
Query: 316  caggatgcgatgaagactggttccttctacggtt 349
               || || |||||||||||||||||||||||||
Sbjct: 1277 tccgacgccatgaagactggttccttctacggtt 1310



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                        
Query: 26   tcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtg 85
            |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| ||||
Sbjct: 987  tcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtg 1046

                                              
Query: 86   ctcgggtgtacgacgatgaggtgcgcaagtgggt 119
            | || || |||||||| |||||||||||||||||
Sbjct: 1047 cccgtgtttacgacgacgaggtgcgcaagtgggt 1080

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 389  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 445
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1423 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1482

                                                                        
Query: 446  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 505
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1483 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1542

                      
Query: 506  cttttaagca 515
            ||||||||||
Sbjct: 1543 cttttaagca 1552



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 136  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1135 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1194

                                                                        
Query: 196  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1195 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1254

                                                                        
Query: 256  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1255 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1314

                                              
Query: 316  caggatgcgatgaagactggttccttctacggtt 349
               || || |||||||||||||||||||||||||
Sbjct: 1315 tccgacgccatgaagactggttccttctacggtt 1348



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                        
Query: 26   tcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtg 85
            |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| ||||
Sbjct: 1025 tcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtg 1084

                                              
Query: 86   ctcgggtgtacgacgatgaggtgcgcaagtgggt 119
            | || || |||||||| |||||||||||||||||
Sbjct: 1085 cccgtgtttacgacgacgaggtgcgcaagtgggt 1118

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 389  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 445
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1422 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1481

                                                                        
Query: 446  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 505
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1482 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1541

                      
Query: 506  cttttaagca 515
            ||||||||||
Sbjct: 1542 cttttaagca 1551



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 136  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1134 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1193

                                                                        
Query: 196  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1194 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1253

                                                                        
Query: 256  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1254 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1313

                                              
Query: 316  caggatgcgatgaagactggttccttctacggtt 349
               || || |||||||||||||||||||||||||
Sbjct: 1314 tccgacgccatgaagactggttccttctacggtt 1347



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                        
Query: 26   tcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtg 85
            |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| ||||
Sbjct: 1024 tcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtg 1083

                                              
Query: 86   ctcgggtgtacgacgatgaggtgcgcaagtgggt 119
            | || || |||||||| |||||||||||||||||
Sbjct: 1084 cccgtgtttacgacgacgaggtgcgcaagtgggt 1117

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 389  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 445
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1206 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1265

                                                                        
Query: 446  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 505
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1266 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1325

                      
Query: 506  cttttaagca 515
            ||||||||||
Sbjct: 1326 cttttaagca 1335



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 136  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 918  gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 977

                                                                        
Query: 196  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 978  aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1037

                                                                        
Query: 256  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1038 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1097

                                              
Query: 316  caggatgcgatgaagactggttccttctacggtt 349
               || || |||||||||||||||||||||||||
Sbjct: 1098 tccgacgccatgaagactggttccttctacggtt 1131



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                       
Query: 26  tcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtg 85
           |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| ||||
Sbjct: 808 tcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtg 867

                                             
Query: 86  ctcgggtgtacgacgatgaggtgcgcaagtgggt 119
           | || || |||||||| |||||||||||||||||
Sbjct: 868 cccgtgtttacgacgacgaggtgcgcaagtgggt 901

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                        
Query: 389  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 445
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1427 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1486

                                                                        
Query: 446  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 505
            ||    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1487 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1546

                      
Query: 506  cttttaagca 515
            ||||||||||
Sbjct: 1547 cttttaagca 1556



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 136  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1139 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1198

                                                                        
Query: 196  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1199 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1258

                                                                        
Query: 256  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1259 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1318

                                              
Query: 316  caggatgcgatgaagactggttccttctacggtt 349
               || || |||||||||||||||||||||||||
Sbjct: 1319 tccgacgccatgaagactggttccttctacggtt 1352



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                        
Query: 26   tcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtg 85
            |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| ||||
Sbjct: 1029 tcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtg 1088

                                              
Query: 86   ctcgggtgtacgacgatgaggtgcgcaagtgggt 119
            | || || |||||||| |||||||||||||||||
Sbjct: 1089 cccgtgtttacgacgacgaggtgcgcaagtgggt 1122

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                          
Query: 421    tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
              |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 107252 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 107193

                                                 
Query: 481    gcgacgacggcagctgcctttacaccttttaagca 515
              |||||||||||||||||||||||||||||||||||
Sbjct: 107192 gcgacgacggcagctgcctttacaccttttaagca 107158



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                          
Query: 136    gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
              |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 108522 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 108463

                                                                          
Query: 196    aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
              ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 108462 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 108403

                                                                          
Query: 256    gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
              ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 108402 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 108343

                                                   
Query: 316    caggatgcgatgaagactggttccttctacggttaga 352
                 || || ||||||||||||||||||||||||||||
Sbjct: 108342 tccgacgccatgaagactggttccttctacggttaga 108306



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                   
Query: 26     tcgtcaagatcgtcgacaccttcccaggacaatccat 62
              |||||||||||||||||| ||||||||| ||||||||
Sbjct: 108724 tcgtcaagatcgtcgacagcttcccaggccaatccat 108688



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                          
Query: 423    cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 482
              ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 112127 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 112068

                             
Query: 483    gacgacggcagctgc 497
              |||||||||||||||
Sbjct: 112067 gacgacggcagctgc 112053



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 70     ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 119
              ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 108588 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 108539



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 136    gagaacattggcaagaggctggtgaactc 164
              |||||||| |||| |||||||||||||||
Sbjct: 112352 gagaacatcggcaggaggctggtgaactc 112324

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                         
Query: 421   tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
             |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 29133 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 29074

                                                
Query: 481   gcgacgacggcagctgcctttacaccttttaagca 515
             |||||||||||||||||||||||||||||||||||
Sbjct: 29073 gcgacgacggcagctgcctttacaccttttaagca 29039



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                         
Query: 136   gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
             |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 30399 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 30340

                                                                         
Query: 196   aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
             ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 30339 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 30280

                                                                         
Query: 256   gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
             ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 30279 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 30220

                                                  
Query: 316   caggatgcgatgaagactggttccttctacggttaga 352
                || || ||||||||||||||||||||||||||||
Sbjct: 30219 tccgacgccatgaagactggttccttctacggttaga 30183



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 26    tcgtcaagatcgtcgacaccttcccaggacaatccat 62
             |||||||||||||||||| ||||||||| ||||||||
Sbjct: 30601 tcgtcaagatcgtcgacagcttcccaggccaatccat 30565



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                         
Query: 423   cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 482
             ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 34004 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 33945

                            
Query: 483   gacgacggcagctgc 497
             |||||||||||||||
Sbjct: 33944 gacgacggcagctgc 33930



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 70    ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 119
             ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 30465 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 30416



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 136   gagaacattggcaagaggctggtgaactc 164
             |||||||| |||| |||||||||||||||
Sbjct: 34229 gagaacatcggcaggaggctggtgaactc 34201

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                        
Query: 421  tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
            |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 1426 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1485

                                               
Query: 481  gcgacgacggcagctgcctttacaccttttaagca 515
            |||||||||||||||||||||||||||||||||||
Sbjct: 1486 gcgacgacggcagctgcctttacaccttttaagca 1520



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 136  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1103 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1162

                                                                        
Query: 196  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1163 aagatgacgatcgaaaagctcatcgagtacggatacatgcttgtgaaggagcaggagaac 1222

                                                                        
Query: 256  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1223 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1282

                                              
Query: 316  caggatgcgatgaagactggttccttctacggtt 349
               || || |||||||||||||||||||||||||
Sbjct: 1283 tccgacgccatgaagactggttccttctacggtt 1316



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                        
Query: 26   tcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtg 85
            |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| ||||
Sbjct: 993  tcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtg 1052

                                              
Query: 86   ctcgggtgtacgacgatgaggtgcgcaagtgggt 119
            | || || |||||||| |||||||||||||||||
Sbjct: 1053 cccgtgtttacgacgacgaggtgcgcaagtgggt 1086

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                        
Query: 421  tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
            |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 1336 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1395

                                               
Query: 481  gcgacgacggcagctgcctttacaccttttaagca 515
            |||||||||||||||||||||||||||||||||||
Sbjct: 1396 gcgacgacggcagctgcctttacaccttttaagca 1430



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Plus

                                                                        
Query: 136  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1098 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1157

                                                                        
Query: 196  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1158 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1217

                                                                        
Query: 256  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1218 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1277

                                            
Query: 316  caggatgcgatgaagactggttccttctacgg 347
               || || |||||||||||||||||||||||
Sbjct: 1278 tccgacgccatgaagactggttccttctacgg 1309



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                        
Query: 26   tcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtg 85
            |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| ||||
Sbjct: 988  tcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtg 1047

                                              
Query: 86   ctcgggtgtacgacgatgaggtgcgcaagtgggt 119
            | || || |||||||| |||||||||||||||||
Sbjct: 1048 cccgtgtttacgacgacgaggtgcgcaagtgggt 1081

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                            
Query: 421      tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
                |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 28302395 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28302336

                                                   
Query: 481      gcgacgacggcagctgcctttacaccttttaagca 515
                |||||||||||||||||||||||||||||||||||
Sbjct: 28302335 gcgacgacggcagctgcctttacaccttttaagca 28302301



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                            
Query: 136      gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
                |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 28303661 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 28303602

                                                                            
Query: 196      aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
                ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 28303601 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 28303542

                                                                            
Query: 256      gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
                ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 28303541 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 28303482

                                                     
Query: 316      caggatgcgatgaagactggttccttctacggttaga 352
                   || || ||||||||||||||||||||||||||||
Sbjct: 28303481 tccgacgccatgaagactggttccttctacggttaga 28303445



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 26       tcgtcaagatcgtcgacaccttcccaggacaatccat 62
                |||||||||||||||||| ||||||||| ||||||||
Sbjct: 28303863 tcgtcaagatcgtcgacagcttcccaggccaatccat 28303827



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                            
Query: 423      cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 482
                ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 28307266 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28307207

                               
Query: 483      gacgacggcagctgc 497
                |||||||||||||||
Sbjct: 28307206 gacgacggcagctgc 28307192



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 70       ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 119
                ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 28303727 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 28303678



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 136      gagaacattggcaagaggctggtgaactc 164
                |||||||| |||| |||||||||||||||
Sbjct: 28307491 gagaacatcggcaggaggctggtgaactc 28307463

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                            
Query: 421      tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
                |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 28284844 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28284785

                                                   
Query: 481      gcgacgacggcagctgcctttacaccttttaagca 515
                |||||||||||||||||||||||||||||||||||
Sbjct: 28284784 gcgacgacggcagctgcctttacaccttttaagca 28284750



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                            
Query: 136      gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
                |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 28286110 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 28286051

                                                                            
Query: 196      aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
                ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 28286050 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 28285991

                                                                            
Query: 256      gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
                ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 28285990 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 28285931

                                                     
Query: 316      caggatgcgatgaagactggttccttctacggttaga 352
                   || || ||||||||||||||||||||||||||||
Sbjct: 28285930 tccgacgccatgaagactggttccttctacggttaga 28285894



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 26       tcgtcaagatcgtcgacaccttcccaggacaatccat 62
                |||||||||||||||||| ||||||||| ||||||||
Sbjct: 28286312 tcgtcaagatcgtcgacagcttcccaggccaatccat 28286276



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                            
Query: 423      cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 482
                ||||||||||  || ||||||||||||   |||   ||||||||||| || || ||||||
Sbjct: 28289715 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28289656

                               
Query: 483      gacgacggcagctgc 497
                |||||||||||||||
Sbjct: 28289655 gacgacggcagctgc 28289641



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 70       ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 119
                ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 28286176 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 28286127



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 136      gagaacattggcaagaggctggtgaactc 164
                |||||||| |||| |||||||||||||||
Sbjct: 28289940 gagaacatcggcaggaggctggtgaactc 28289912

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                        
Query: 421  tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
            |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 1371 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1430

                                               
Query: 481  gcgacgacggcagctgcctttacaccttttaagca 515
            |||||||||||||||||||||||||||||||||||
Sbjct: 1431 gcgacgacggcagctgcctttacaccttttaagca 1465



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Plus

                                                                        
Query: 136  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1133 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1192

                                                                        
Query: 196  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1193 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1252

                                                                        
Query: 256  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1253 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1312

                                            
Query: 316  caggatgcgatgaagactggttccttctacgg 347
               || || |||||||||||||||||||||||
Sbjct: 1313 tccgacgccatgaagactggttccttctacgg 1344



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                        
Query: 26   tcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtg 85
            |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| ||||
Sbjct: 1023 tcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtg 1082

                                              
Query: 86   ctcgggtgtacgacgatgaggtgcgcaagtgggt 119
            | || || |||||||| |||||||||||||||||
Sbjct: 1083 cccgtgtttacgacgacgaggtgcgcaagtgggt 1116

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  129 bits (65), Expect = 1e-26
 Identities = 191/233 (81%)
 Strand = Plus / Plus

                                                                        
Query: 40   gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 99
            ||||||||||| || || ||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct: 1010 gacaccttcccggggcagtccatcgacttcttcggcgcgctgcgggcgcgggtgtacgac 1069

                                                                        
Query: 100  gatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctggtg 159
            || |||||||||||||||||||||   | |||  ||||||||||   |||| |||| || 
Sbjct: 1070 gacgaggtgcgcaagtgggtcggcgagatcggcgtcgagaacatctccaagcggctcgtc 1129

                                                                        
Query: 160  aactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgcta 219
            |||||  |||| |||||   ||| ||||| ||||| ||||||||  ||||||||||  | 
Sbjct: 1130 aactccagggaggggccgccgacgttcgaccagcccaagatgaccatcgagaagctcatg 1189

                                                                 
Query: 220  gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagct 272
            |||||||| |||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 1190 gagtacggccacatgctggtccaggagcaggagaacgtgaagcgcgtgcagct 1242

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  125 bits (63), Expect = 2e-25
 Identities = 171/207 (82%)
 Strand = Plus / Plus

                                                                        
Query: 145  ggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgaca 204
            |||||||||||||||||||||| ||| |||||   ||| |||| |||||| |||||||| 
Sbjct: 801  ggcaagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgacc 860

                                                                        
Query: 205  gtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgt 264
             | || |||||||| ||||||||  ||||||| || ||||||||||| || || ||| | 
Sbjct: 861  ctggacaagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagg 920

                                                                        
Query: 265  gtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcg 324
            |||||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| |||
Sbjct: 921  gtgcagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcg 980

                                       
Query: 325  atgaagactggttccttctacggttag 351
            || |||||||| |||||||| ||||||
Sbjct: 981  atcaagactggatccttctatggttag 1007



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Plus

                                                                       
Query: 24  tgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcg 83
           |||| ||||| |||||||||||||||| || |||||||||||||| |||||||| ||| |
Sbjct: 680 tgtcatcaagctcgtcgacaccttccccggccaatccattgacttcttcggtgcactgag 739

                                             
Query: 84  tgctcgggtgtacgacgatgaggtgcgcaagtgg 117
            ||  |||| |||||||| |||||| | ||||||
Sbjct: 740 ggcgagggtctacgacgacgaggtgaggaagtgg 773



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 432  gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 491
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1076 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1135

                          
Query: 492  agctgcctttacac 505
            |||||||| |||||
Sbjct: 1136 agctgcctgtacac 1149

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                       
Query: 136 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
           |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 352 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 411

                                                                       
Query: 196 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
           ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 412 aagatgacgatcgaaaagctcatcgagtacggatacatgcttgtgaaggagcaggagaac 471

                                                                       
Query: 256 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
           ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 472 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 531

                                             
Query: 316 caggatgcgatgaagactggttccttctacggtt 349
              || || |||||||||||||||||||||||||
Sbjct: 532 tccgacgccatgaagactggttccttctacggtt 565



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                       
Query: 26  tcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtg 85
           |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| ||||
Sbjct: 242 tcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtg 301

                                             
Query: 86  ctcgggtgtacgacgatgaggtgcgcaagtgggt 119
           | || || |||||||| |||||||||||||||||
Sbjct: 302 cccgtgtttacgacgacgaggtgcgcaagtgggt 335

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 136  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 195
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1146 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1205

                                                                        
Query: 196  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 255
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1206 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1265

                                                                        
Query: 256  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 315
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1266 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1325

                                              
Query: 316  caggatgcgatgaagactggttccttctacggtt 349
               || || |||||||||||||||||||||||||
Sbjct: 1326 tccgacgccatgaagactggttccttctacggtt 1359



 Score =  119 bits (60), Expect = 1e-23
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Plus

                                                                        
Query: 389  aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 445
            |||||||||  |||||||||||||||   |||   |||| ||||||||||||||||||||
Sbjct: 1434 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1493

                                                                        
Query: 446  ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 505
            ||    ||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1494 ccctgttgccaagaatt-cgacccaacggcgaggagcgacgacggcagctgcctttacac 1552

                      
Query: 506  cttttaagca 515
            ||||||||||
Sbjct: 1553 cttttaagca 1562



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                        
Query: 26   tcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtg 85
            |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| ||||
Sbjct: 1036 tcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtg 1095

                                              
Query: 86   ctcgggtgtacgacgatgaggtgcgcaagtgggt 119
            | || || |||||||| |||||||||||||||||
Sbjct: 1096 cccgtgtttacgacgacgaggtgcgcaagtgggt 1129

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 3e-24
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                       
Query: 421 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
           |||| ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||
Sbjct: 5   tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 64

                                        
Query: 481 gcgacgacggcagctgcctttacaccttt 509
           |||||||||||||||||||||||||||||
Sbjct: 65  gcgacgacggcagctgcctttacaccttt 93

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Plus

                                                                        
Query: 145  ggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgaca 204
            |||||||||||||||||||||| ||| |||||   ||| |||| |||||| |||||||| 
Sbjct: 995  ggcaagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgacc 1054

                                                                        
Query: 205  gtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgt 264
             | || |||||||| ||||||||  ||||||| || ||||||||||| || || ||| | 
Sbjct: 1055 ctggacaagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagg 1114

                                                                        
Query: 265  gtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcg 324
            |||||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| |||
Sbjct: 1115 gtgcagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcg 1174

                                
Query: 325  atgaagactggttccttcta 344
            || |||||||| ||||||||
Sbjct: 1175 atcaagactggatccttcta 1194



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Plus

                                                                       
Query: 24  tgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcg 83
           |||| ||||| |||||||||||||||| || |||||||||||||| |||||||| ||| |
Sbjct: 874 tgtcatcaagctcgtcgacaccttccccggccaatccattgacttcttcggtgcactgag 933

                                             
Query: 84  tgctcgggtgtacgacgatgaggtgcgcaagtgg 117
            ||  |||| |||||||| |||||| | ||||||
Sbjct: 934 ggcgagggtctacgacgacgaggtgaggaagtgg 967



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 432  gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 491
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1232 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1291

                          
Query: 492  agctgcctttacac 505
            |||||||| |||||
Sbjct: 1292 agctgcctgtacac 1305

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  103 bits (52), Expect = 7e-19
 Identities = 166/204 (81%)
 Strand = Plus / Plus

                                                                        
Query: 148  aagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtc 207
            ||||||||||||||||||| ||| |||||   ||| |||| |||||| ||||||||  | 
Sbjct: 1105 aagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctg 1164

                                                                        
Query: 208  gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 267
            || |||||||| ||||||||  | ||||| || ||||| ||||| || || ||| | |||
Sbjct: 1165 gacaagctgctggagtacggcaatatgctggtgcaggaacaggagaacgtgaagagggtg 1224

                                                                        
Query: 268  cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 327
            ||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| ||||| 
Sbjct: 1225 cagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatc 1284

                                    
Query: 328  aagactggttccttctacggttag 351
            |||||||| |||||||| ||||||
Sbjct: 1285 aagactggatccttctatggttag 1308



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Plus

                                                                        
Query: 24   tgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcg 83
            |||| ||||| |||||||||||||||| || |||||||||||||| |||||||| ||| |
Sbjct: 981  tgtcatcaagctcgtcgacaccttccccggccaatccattgacttcttcggtgcactgag 1040

                                              
Query: 84   tgctcgggtgtacgacgatgaggtgcgcaagtgg 117
             ||  |||| |||||||| |||||| | ||||||
Sbjct: 1041 ggcgagggtctacgacgacgaggtgaggaagtgg 1074



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 432  gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 491
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1377 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1436

                          
Query: 492  agctgcctttacac 505
            |||||||| |||||
Sbjct: 1437 agctgcctgtacac 1450

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                       
Query: 421 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
           |||| ||||||||||||||  ||||||    ||||||||||| |||||||||||| ||||
Sbjct: 41  tgcctgtgccggaaggttgacccgaccctgttgccaagaacttcgacccaacggcgagga 100

                                              
Query: 481 gcgacgacggcagctgcctttacaccttttaagca 515
           |||||||||||||||||||||| | ||||||||||
Sbjct: 101 gcgacgacggcagctgcctttaaaacttttaagca 135

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 160/197 (81%)
 Strand = Plus / Plus

                                                                        
Query: 148  aagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtc 207
            ||||||||||||||||||| ||| |||||   ||| |||| |||||| ||||||||  | 
Sbjct: 968  aagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctg 1027

                                                                        
Query: 208  gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 267
            || |||||||| ||||||||  | ||||| || ||||| ||||| || || ||| | |||
Sbjct: 1028 gacaagctgctggagtacggcaatatgctggtgcaggaacaggagaacgtgaagagggtg 1087

                                                                        
Query: 268  cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 327
            ||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| ||||| 
Sbjct: 1088 cagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatc 1147

                             
Query: 328  aagactggttccttcta 344
            |||||||| ||||||||
Sbjct: 1148 aagactggatccttcta 1164



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Plus

                                                                       
Query: 24  tgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcg 83
           |||| ||||| |||||||||||||||| || |||||||||||||| |||||||| ||| |
Sbjct: 844 tgtcatcaagctcgtcgacaccttccccggccaatccattgacttcttcggtgcactgag 903

                                             
Query: 84  tgctcgggtgtacgacgatgaggtgcgcaagtgg 117
            ||  |||| |||||||| |||||| | ||||||
Sbjct: 904 ggcgagggtctacgacgacgaggtgaggaagtgg 937



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 432  gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 491
            |||||||| |||||||  |||||||  |||| |||||| ||||| ||||||||||| |||
Sbjct: 1202 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1261

                          
Query: 492  agctgcctttacac 505
            |||||||| |||||
Sbjct: 1262 agctgcctgtacac 1275

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Plus

                                                                       
Query: 184 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 243
           ||||||||||| ||||| ||  ||||||||||  | |||||||| |||||||| ||   |
Sbjct: 760 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 819

                                                                       
Query: 244 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 303
           |||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| 
Sbjct: 820 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 879

                                                   
Query: 304 ggtgatgctaaccaggatgcgatgaagactggttccttct 343
           ||||| || ||| |||| || ||||||||||| |||||||
Sbjct: 880 ggtgaagccaacgaggacgccatgaagactggctccttct 919



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                       
Query: 37  gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 96
           |||||||||||||| || || ||||| ||||| ||||| || |||||||| ||||| |||
Sbjct: 613 gtcgacaccttccctggccagtccatcgacttcttcggcgcgctgcgtgcccgggtctac 672

                      
Query: 97  gacgatgaggt 107
           ||||| |||||
Sbjct: 673 gacgacgaggt 683

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Plus

                                                                        
Query: 184  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 243
            ||||||||||| ||||| ||  ||||||||||  | |||||||| |||||||| ||   |
Sbjct: 1155 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 1214

                                                                        
Query: 244  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 303
            |||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| 
Sbjct: 1215 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 1274

                                                    
Query: 304  ggtgatgctaaccaggatgcgatgaagactggttccttct 343
            ||||| || ||| |||| || ||||||||||| |||||||
Sbjct: 1275 ggtgaagccaacgaggacgccatgaagactggctccttct 1314



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                        
Query: 37   gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 96
            |||||||||||||| || || ||||| || || ||||| || |||||||| ||||| |||
Sbjct: 1008 gtcgacaccttccctggccagtccatcgatttcttcggcgcgctgcgtgcccgggtctac 1067

                       
Query: 97   gacgatgaggt 107
            ||||| |||||
Sbjct: 1068 gacgacgaggt 1078

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Plus

                                                                        
Query: 184  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 243
            ||||||||||| ||||| ||  ||||||||||  | |||||||| |||||||| ||   |
Sbjct: 1155 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 1214

                                                                        
Query: 244  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 303
            |||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| 
Sbjct: 1215 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 1274

                                                    
Query: 304  ggtgatgctaaccaggatgcgatgaagactggttccttct 343
            ||||| || ||| |||| || ||||||||||| |||||||
Sbjct: 1275 ggtgaagccaacgaggacgccatgaagactggctccttct 1314

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                        
Query: 40   gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 99
            ||||||||||| || || ||||| ||||| ||||| || ||||| || ||||||||||||
Sbjct: 1160 gacaccttcccggggcagtccatcgacttcttcggcgcgctgcgggcacgggtgtacgac 1219

                                    
Query: 100  gatgaggtgcgcaagtgggtcggc 123
            || |||||||||||||||||||||
Sbjct: 1220 gacgaggtgcgcaagtgggtcggc 1243



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 184  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 243
            ||||| ||||| ||||||||  | ||||||||  | |||||||| |||||||| ||||||
Sbjct: 1304 ttcgaccagcccaagatgaccatagagaagctcatggagtacggccacatgctggtccag 1363

                                         
Query: 244  gagcaggacaatgtcaagcgtgtgcagct 272
            |||||||| || |||||||||||||||||
Sbjct: 1364 gagcaggagaacgtcaagcgtgtgcagct 1392

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Plus

                                                                       
Query: 211 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 270
           |||||||||||||| ||  ||||||| |||||||||||||||||||| ||| | || || 
Sbjct: 3   aagctgctagagtatggaaacatgcttgtccaggagcaggacaatgtgaagagagttcaa 62

                                                                   
Query: 271 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgat 326
           || || ||||| ||| ||||||| |||||||| || ||||| ||| ||||| ||||
Sbjct: 63  ctggcagacacgtacttgagccaagcagctcttggagatgcaaacgaggattcgat 118

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                           
Query: 421     tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
               |||| ||||||||||||||||||||||    |||||| ||||  ||||||||||| | ||
Sbjct: 4541319 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 4541378

                                                  
Query: 481     gcgacgacggcagctgcctttacaccttttaagca 515
               || ||||| ||| ||||||||||||||| ||||||
Sbjct: 4541379 gcaacgacagcatctgcctttacaccttctaagca 4541413

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                         
Query: 421   tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 480
             |||| ||||||||||||||||||||||    |||||| ||||  ||||||||||| | ||
Sbjct: 84693 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 84752

                                                
Query: 481   gcgacgacggcagctgcctttacaccttttaagca 515
             || ||||| ||| ||||||||||||||| ||||||
Sbjct: 84753 gcaacgacagcatctgcctttacaccttctaagca 84787

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                      
Query: 40   gacaccttcccaggacaatccattgactttttcggtgctctg 81
            ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1072 gacaccttcccgggccaatccattgactttttcggtgctctg 1113

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                  
Query: 28   gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 81
            |||||||||||||| | |||||| |||||||| ||||| || ||||||||||||
Sbjct: 1073 gtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctg 1126

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                        
Query: 40   gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 99
            ||||||||||| || || ||||||||||| ||||| || |||||||| || |||||||||
Sbjct: 2662 gacaccttccccggccagtccattgacttcttcggcgccctgcgtgcccgcgtgtacgac 2721

              
Query: 100  ga 101
            ||
Sbjct: 2722 ga 2723

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
            activase mRNA, complete cds
          Length = 1693

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                        
Query: 40   gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 99
            ||||||||||| || || ||||||||||| ||||| || |||||||| || |||||||||
Sbjct: 972  gacaccttccccggccagtccattgacttcttcggcgccctgcgtgcccgcgtgtacgac 1031

              
Query: 100  ga 101
            ||
Sbjct: 1032 ga 1033

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Plus

                                                                        
Query: 184  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 243
            ||||||||||| ||||||||  |||| ||||| || ||||||||  ||||||| ||||| 
Sbjct: 1232 ttcgagcagccgaagatgactatcgaaaagctcctcgagtacggaaacatgcttgtccaa 1291

                                                                        
Query: 244  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 303
            ||||| || ||||| ||| | || ||  | ||||| |  ||| ||||| |||| ||||| 
Sbjct: 1292 gagcaagagaatgtgaagagagttcaattggctgataagtacttgagcgaggctgctctt 1351

                        
Query: 304  ggtgatgctaac 315
            ||||||||||||
Sbjct: 1352 ggtgatgctaac 1363



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                        
Query: 40   gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 99
            |||||||||||||| ||||| ||||| || || |||||  || | ||| |||| ||||||
Sbjct: 1088 gacaccttcccaggccaatctattgatttctttggtgccttgagggctagggtttacgac 1147

                              
Query: 100  gatgaggtgcgcaagtgg 117
            ||||| ||| | ||||||
Sbjct: 1148 gatgaagtgaggaagtgg 1165

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 28   gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgc 77
            |||||| |||||||||||||||| || ||||| ||||| || ||||||||
Sbjct: 1115 gtcaagctcgtcgacaccttccctggccaatctattgatttcttcggtgc 1164

---

>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase
          Length = 2031

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                        
Query: 37   gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 96
            |||||||||||||||||||| || || ||||| || |||||| || | ||||| || || 
Sbjct: 1080 gtcgacaccttcccaggacagtcaatagacttctttggtgctttgagagctcgagtttat 1139

                                  
Query: 97   gacgatgaggtgcgcaagtggg 118
            |||||||| ||| | |||||||
Sbjct: 1140 gacgatgaagtgagaaagtggg 1161

---

>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence
          Length = 619

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 25  gtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgt 84
           |||||| || |||||||| ||||||| || || ||||| ||||| ||||| || || || 
Sbjct: 542 gtcgtccagctcgtcgacgccttcccgggccagtccatcgacttcttcggcgccctccgc 601

                            
Query: 85  gctcgggtgtacgacga 101
           || ||||||||||||||
Sbjct: 602 gcccgggtgtacgacga 618

---

>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence
          Length = 627

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 25  gtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgt 84
           |||||| || |||||||| ||||||| || || ||||| ||||| ||||| || || || 
Sbjct: 550 gtcgtccagctcgtcgacgccttcccgggccagtccatcgacttcttcggcgccctccgc 609

                            
Query: 85  gctcgggtgtacgacga 101
           || ||||||||||||||
Sbjct: 610 gcccgggtgtacgacga 626

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 35  tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 94
           |||||||||||||||| || |||||||| || || ||||||||  || | |||||||| |
Sbjct: 881 tcgtcgacaccttccccggccaatccatcgatttcttcggtgccttgagggctcgggttt 940

               
Query: 95  acga 98
           ||||
Sbjct: 941 acga 944

---

>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds
          Length = 1063

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 75/92 (81%)
 Strand = Plus / Plus

                                                                       
Query: 28  gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgct 87
           |||||||| || ||||||||||| || |||||||| || || ||||||||  || | |||
Sbjct: 498 gtcaagattgttgacaccttccctggccaatccatcgatttcttcggtgcattgagggct 557

                                           
Query: 88  cgggtgtacgacgatgaggtgcgcaagtgggt 119
            | |||||||| ||||| ||| | ||||||||
Sbjct: 558 agagtgtacgatgatgaagtgaggaagtgggt 589

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 35  tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 94
           |||||||||||||||| || |||||||| || || ||||||||  || | |||||||| |
Sbjct: 882 tcgtcgacaccttccccggccaatccatcgatttcttcggtgccttgagggctcgggttt 941

               
Query: 95  acga 98
           ||||
Sbjct: 942 acga 945

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                              
Query: 274  gctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgc 323
            |||||||  ||||||||  |||| || || ||||||||||||||||||||
Sbjct: 1306 gctgacaagtacatgagtgaggctgcccttggtgatgctaaccaggatgc 1355

---

>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase
           (pJQ11)
          Length = 883

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 28  gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgc 77
           |||||||| || || | |||||| |||||||| || ||||||||||||||
Sbjct: 296 gtcaagattgttgataacttccctggacaatctatcgactttttcggtgc 345

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 289   agccaggcagctctgggtgatg 310
             ||||||||||||||||||||||
Sbjct: 51254 agccaggcagctctgggtgatg 51275

---

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 589   ttaatatatctctaaatatatt 610
             ||||||||||||||||||||||
Sbjct: 67963 ttaatatatctctaaatatatt 67942

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                        
Query: 35   tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 94
            |||| ||| ||||||| |||||||| || ||||||||||| ||  || | ||||| || |
Sbjct: 1236 tcgttgacgccttccctggacaatctatcgactttttcggagcgttgagggctcgtgtat 1295

                      
Query: 95   acgacgatga 104
            ||||||||||
Sbjct: 1296 acgacgatga 1305

---

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 588   gttaatatatctctaaatata 608
             |||||||||||||||||||||
Sbjct: 12335 gttaatatatctctaaatata 12315

---

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 30   caagatcgtcgacaccttccc 50
            |||||||||||||||||||||
Sbjct: 3673 caagatcgtcgacaccttccc 3653

---

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 588   gttaatatatctctaaatata 608
             |||||||||||||||||||||
Sbjct: 66367 gttaatatatctctaaatata 66387

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 519     cacttttaatatctgatgttt 539
               |||||||||||||||||||||
Sbjct: 3040420 cacttttaatatctgatgttt 3040440

---

>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   acccaccatctcttgctgcat 388
             |||||||||||||||||||||
Sbjct: 63550 acccaccatctcttgctgcat 63530

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 244  gagcaggacaatgtcaagcgtgtgcagct 272
            |||||||| ||||||||||| ||||||||
Sbjct: 2105 gagcaggagaatgtcaagcgcgtgcagct 2133

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 519     cacttttaatatctgatgttt 539
               |||||||||||||||||||||
Sbjct: 3040365 cacttttaatatctgatgttt 3040385

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 519    cacttttaatatctgatgttt 539
              |||||||||||||||||||||
Sbjct: 114423 cacttttaatatctgatgttt 114403

---

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 588  gttaatatatctctaaatata 608
            |||||||||||||||||||||
Sbjct: 6197 gttaatatatctctaaatata 6217

---

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   tgcataggaggaggtaaagg 403
             ||||||||||||||||||||
Sbjct: 46378 tgcataggaggaggtaaagg 46359

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  tgagccaggcagctctgggtgatg 310
            ||||||||||||||||||| ||||
Sbjct: 1565 tgagccaggcagctctgggcgatg 1542

---

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 384  tgcataggaggaggtaaagg 403
            ||||||||||||||||||||
Sbjct: 1656 tgcataggaggaggtaaagg 1637

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 68/84 (80%)
 Strand = Plus / Plus

                                                                        
Query: 231  catgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgag 290
            |||||| |||||||||||||| || |||||| | || ||  | |||||||  ||||||  
Sbjct: 1263 catgcttgtccaggagcaggagaacgtcaagagagttcaattagctgacaaatacatgtc 1322

                                    
Query: 291  ccaggcagctctgggtgatgctaa 314
            | |||| ||||| |||||||||||
Sbjct: 1323 cgaggctgctcttggtgatgctaa 1346

---

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   tgcataggaggaggtaaagg 403
             ||||||||||||||||||||
Sbjct: 32964 tgcataggaggaggtaaagg 32945

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 agcgtgtgcagcttgctgac 279
           ||||||||||||||||||||
Sbjct: 223 agcgtgtgcagcttgctgac 242

---

>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B
          Length = 1010

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  agtgacgagtctgtcgtcaa 32
           ||||||||||||||||||||
Sbjct: 308 agtgacgagtctgtcgtcaa 289

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 515    atgccacttttaatatctga 534
              ||||||||||||||||||||
Sbjct: 141077 atgccacttttaatatctga 141058

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 515    atgccacttttaatatctga 534
              ||||||||||||||||||||
Sbjct: 142583 atgccacttttaatatctga 142564

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 515   atgccacttttaatatctga 534
             ||||||||||||||||||||
Sbjct: 95911 atgccacttttaatatctga 95930

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  tgagccaggcagctctgggtgatg 310
            ||||||||||||||||||| ||||
Sbjct: 1619 tgagccaggcagctctgggcgatg 1596

---

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 591   aatatatctctaaatatatt 610
             ||||||||||||||||||||
Sbjct: 30473 aatatatctctaaatatatt 30454

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    caggagcaggacaatgtcaa 260
              ||||||||||||||||||||
Sbjct: 126419 caggagcaggacaatgtcaa 126438

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  tgagccaggcagctctgggtgatg 310
            ||||||||||||||||||| ||||
Sbjct: 1935 tgagccaggcagctctgggcgatg 1912

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 479  gagcgacgacggcagctgcctttacacc 506
            |||||||||||||||| |||| ||||||
Sbjct: 5133 gagcgacgacggcagcagcctgtacacc 5160

---

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 563   tccaagcgattgctgggcatgttt 586
             ||||| ||||||||||||||||||
Sbjct: 41715 tccaatcgattgctgggcatgttt 41692

---

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   tgcataggaggaggtaaagg 403
             ||||||||||||||||||||
Sbjct: 34681 tgcataggaggaggtaaagg 34662

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  tgagccaggcagctctgggtgatg 310
            ||||||||||||||||||| ||||
Sbjct: 1659 tgagccaggcagctctgggcgatg 1636

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  tgagccaggcagctctgggtgatg 310
            ||||||||||||||||||| ||||
Sbjct: 2026 tgagccaggcagctctgggcgatg 2003

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  tgagccaggcagctctgggtgatg 310
            ||||||||||||||||||| ||||
Sbjct: 1935 tgagccaggcagctctgggcgatg 1912

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   tacaccttttaagcatgcca 520
             ||||||||||||||||||||
Sbjct: 78254 tacaccttttaagcatgcca 78235

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    caggagcaggacaatgtcaa 260
              ||||||||||||||||||||
Sbjct: 106979 caggagcaggacaatgtcaa 106960

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  tgagccaggcagctctgggtgatg 310
            ||||||||||||||||||| ||||
Sbjct: 1619 tgagccaggcagctctgggcgatg 1596

---

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 391 gaggaggtaaaggagcacagcaag 414
           |||||||||||||||| |||||||
Sbjct: 625 gaggaggtaaaggagcccagcaag 648

---

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   tgcataggaggaggtaaagg 403
             ||||||||||||||||||||
Sbjct: 27736 tgcataggaggaggtaaagg 27755

---

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 591   aatatatctctaaatatatt 610
             ||||||||||||||||||||
Sbjct: 62485 aatatatctctaaatatatt 62504

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 512    agcatgccacttttaatatctgat 535
              |||||| |||||||||||||||||
Sbjct: 127852 agcatggcacttttaatatctgat 127875


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,464,400
Number of Sequences: 3902068
Number of extensions: 4464400
Number of successful extensions: 86150
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 85768
Number of HSP's gapped (non-prelim): 330
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---