ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal11e18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467671.1| Oryza sativa (japonica cultivar-group), mRNA 232 8e-58
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 232 8e-58
3dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic D... 232 8e-58
4dbj|AK099700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 8e-58
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
6dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
7gb|AC078786.22| Homo sapiens 3 BAC RP11-474F17 (Roswell Park Can... 48 0.025
8gb|AC068781.19| Homo sapiens 3 BAC RP11-457K10 (Roswell Park Can... 48 0.025
9gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswel... 46 0.098
10gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54... 46 0.098
11emb|BX004837.9| Zebrafish DNA sequence from clone CH211-134F7 in... 44 0.39
12emb|CR382336.11| Zebrafish DNA sequence from clone CH211-125A6 i... 44 0.39
13ref|XM_465614.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
14emb|AL590484.10| Human DNA sequence from clone RP11-76E18 on chr... 42 1.5
15emb|AL162390.9| Human DNA sequence from clone RP11-386J22 on chr... 42 1.5
16gb|AE005852.1| Caulobacter crescentus CB15 section 178 of 359 of... 42 1.5
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
18dbj|AP004870.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
19dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
20dbj|AK120516.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
21dbj|AK105639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
22dbj|AP001793.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.5
23emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 ... 42 1.5
24gb|AC149528.2| Xenopus tropicalis clone ISB-292P1, complete sequ... 40 6.1
25ref|NM_184913.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
26gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.1
27gb|AC161219.4| Mus musculus chromosome 7, clone RP23-83E16, comp... 40 6.1
28gb|AY658885.1| Synthetic construct Peudomonas aeruginosa clone F... 40 6.1
29ref|XM_610755.2| PREDICTED: Bos taurus hypothetical LOC532244 (L... 40 6.1
30gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 6.1
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.1
32gb|AC074386.6| Homo sapiens BAC clone RP11-464H1 from 7, complet... 40 6.1
33gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complet... 40 6.1
34ref|XM_671871.1| Plasmodium berghei strain ANKA hypothetical pro... 40 6.1
35emb|Z97198.1|HS471M13 Human DNA sequence from clone RP3-471M13 o... 40 6.1
36emb|AL590709.5| Human DNA sequence from clone RP11-441N10 on chr... 40 6.1
37emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chr... 40 6.1
38emb|AL136223.11| Human DNA sequence from clone RP1-242G1 on chro... 40 6.1
39emb|AL132874.30|HSJ329L24 Human DNA sequence from clone RP3-329L... 40 6.1
40gb|AC011848.11| Homo sapiens chromosome 17, clone RP11-354C22, c... 40 6.1
41gb|AC009812.17| Homo sapiens chromosome 8, clone RP11-48B3, comp... 40 6.1
42emb|AJ853840.1| Hordeum vulgare partial mRNA for putative WRKY4 ... 40 6.1
43gb|AC093014.11| Homo sapiens 12 BAC RP11-734E19 (Roswell Park Ca... 40 6.1
44gb|AC148826.4| Pan troglodytes BAC clone CH251-484F13 from chrom... 40 6.1
45dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 6.1
46gb|AC092937.8| Homo sapiens 3q BAC RP11-114F20 (Roswell Park Can... 40 6.1
47gb|AC005831.1| Homo sapiens 12p13.3 PAC RPCI5-1180D12 (Roswell P... 40 6.1
48gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 6.1
49gb|AC148318.3| Pan troglodytes BAC clone CH251-496K6 from chromo... 40 6.1
50dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
51gb|AF328473.1|AF328473 Homo sapiens clone 3qtel_c18t3 sequence 40 6.1
52gb|AE004660.1| Pseudomonas aeruginosa PAO1, section 221 of 529 o... 40 6.1
53gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.1
54gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, com... 40 6.1
55gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.1
56dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 6.1
57dbj|AP004955.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 6.1
58emb|AL121981.17|HS1061C18 Human DNA sequence from clone RP5-1061... 40 6.1
59gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genom... 40 6.1
60emb|AL732469.8| Mouse DNA sequence from clone RP23-434B15 on chr... 40 6.1 
>ref|XM_467671.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2168

 Score =  232 bits (117), Expect = 8e-58
 Identities = 171/189 (90%)
 Strand = Plus / Plus

                                                                        
Query: 36   tcaactccggcgtgttcgcgggcggcccgcccgtgcccgtgggcgcgcagaagctgctca 95
            ||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 1746 tcaactccggcgtgttcgccggcgggccgccggtgcccgtcggcgcgcagaagctgctca 1805

                                                                        
Query: 96   agttcgtggacacctcgcaggtgaccatgggcccgcacgacagccccggatactggctcg 155
            ||||||||||||| ||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 1806 agttcgtggacacgtcgcaggtgaccatgggaccgcaggatagccccggttactggctcg 1865

                                                                        
Query: 156  ccaccggcgccaggctcgacgtcgacaagggcaagatctcgctgcacgtcaagttctccc 215
             ||||||||| ||||| |||||||||||||| ||||||  |||||| ||||||||||| |
Sbjct: 1866 tcaccggcgcaaggctggacgtcgacaaggggaagatcatgctgcatgtcaagttctcac 1925

                     
Query: 216  tgctcgccc 224
            |||| ||||
Sbjct: 1926 tgctagccc 1934
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  232 bits (117), Expect = 8e-58
 Identities = 171/189 (90%)
 Strand = Plus / Minus

                                                                            
Query: 36       tcaactccggcgtgttcgcgggcggcccgcccgtgcccgtgggcgcgcagaagctgctca 95
                ||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 30755605 tcaactccggcgtgttcgccggcgggccgccggtgcccgtcggcgcgcagaagctgctca 30755546

                                                                            
Query: 96       agttcgtggacacctcgcaggtgaccatgggcccgcacgacagccccggatactggctcg 155
                ||||||||||||| ||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 30755545 agttcgtggacacgtcgcaggtgaccatgggaccgcaggatagccccggttactggctcg 30755486

                                                                            
Query: 156      ccaccggcgccaggctcgacgtcgacaagggcaagatctcgctgcacgtcaagttctccc 215
                 ||||||||| ||||| |||||||||||||| ||||||  |||||| ||||||||||| |
Sbjct: 30755485 tcaccggcgcaaggctggacgtcgacaaggggaagatcatgctgcatgtcaagttctcac 30755426

                         
Query: 216      tgctcgccc 224
                |||| ||||
Sbjct: 30755425 tgctagccc 30755417



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 36       tcaactccggcgtgttcgcgggcggcccgcccgtgcc 72
                ||||||||||||||| | ||| ||| |||||||||||
Sbjct: 16363546 tcaactccggcgtgtacccggacggtccgcccgtgcc 16363582
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>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0487D09
          Length = 161531

 Score =  232 bits (117), Expect = 8e-58
 Identities = 171/189 (90%)
 Strand = Plus / Minus

                                                                         
Query: 36    tcaactccggcgtgttcgcgggcggcccgcccgtgcccgtgggcgcgcagaagctgctca 95
             ||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 95752 tcaactccggcgtgttcgccggcgggccgccggtgcccgtcggcgcgcagaagctgctca 95693

                                                                         
Query: 96    agttcgtggacacctcgcaggtgaccatgggcccgcacgacagccccggatactggctcg 155
             ||||||||||||| ||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 95692 agttcgtggacacgtcgcaggtgaccatgggaccgcaggatagccccggttactggctcg 95633

                                                                         
Query: 156   ccaccggcgccaggctcgacgtcgacaagggcaagatctcgctgcacgtcaagttctccc 215
              ||||||||| ||||| |||||||||||||| ||||||  |||||| ||||||||||| |
Sbjct: 95632 tcaccggcgcaaggctggacgtcgacaaggggaagatcatgctgcatgtcaagttctcac 95573

                      
Query: 216   tgctcgccc 224
             |||| ||||
Sbjct: 95572 tgctagccc 95564
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>dbj|AK099700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075C24, full
            insert sequence
          Length = 2167

 Score =  232 bits (117), Expect = 8e-58
 Identities = 171/189 (90%)
 Strand = Plus / Plus

                                                                        
Query: 36   tcaactccggcgtgttcgcgggcggcccgcccgtgcccgtgggcgcgcagaagctgctca 95
            ||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||
Sbjct: 1746 tcaactccggcgtgttcgccggcgggccgccggtgcccgtcggcgcgcagaagctgctca 1805

                                                                        
Query: 96   agttcgtggacacctcgcaggtgaccatgggcccgcacgacagccccggatactggctcg 155
            ||||||||||||| ||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 1806 agttcgtggacacgtcgcaggtgaccatgggaccgcaggatagccccggttactggctcg 1865

                                                                        
Query: 156  ccaccggcgccaggctcgacgtcgacaagggcaagatctcgctgcacgtcaagttctccc 215
             ||||||||| ||||| |||||||||||||| ||||||  |||||| ||||||||||| |
Sbjct: 1866 tcaccggcgcaaggctggacgtcgacaaggggaagatcatgctgcatgtcaagttctcac 1925

                     
Query: 216  tgctcgccc 224
            |||| ||||
Sbjct: 1926 tgctagccc 1934
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  176 bits (89), Expect = 4e-41
 Identities = 158/181 (87%)
 Strand = Plus / Plus

                                                                           
Query: 39      actccggcgtgttcgcgggcggcccgcccgtgcccgtgggcgcgcagaagctgctcaagt 98
               |||||||||||||||| || || ||||| | ||| ||||| ||||||  |||||||||||
Sbjct: 7851566 actccggcgtgttcgccggagggccgccggcgccggtgggggcgcagcggctgctcaagt 7851625

                                                                           
Query: 99      tcgtggacacctcgcaggtgaccatgggcccgcacgacagccccggatactggctcgcca 158
               ||||||| || ||||||||||||||||| ||||| ||| | ||||| |||||||| | ||
Sbjct: 7851626 tcgtggagacgtcgcaggtgaccatggggccgcaggactgtcccggctactggctggtca 7851685

                                                                           
Query: 159     ccggcgccaggctcgacgtcgacaagggcaagatctcgctgcacgtcaagttctccctgc 218
               |||| || | |||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 7851686 ccggagcaaagctcgacgtcgacaaggggaggatctcgctgcacgtcaagttctccctgc 7851745

                
Query: 219     t 219
               |
Sbjct: 7851746 t 7851746
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>dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0431E05
          Length = 146091

 Score =  176 bits (89), Expect = 4e-41
 Identities = 158/181 (87%)
 Strand = Plus / Plus

                                                                         
Query: 39    actccggcgtgttcgcgggcggcccgcccgtgcccgtgggcgcgcagaagctgctcaagt 98
             |||||||||||||||| || || ||||| | ||| ||||| ||||||  |||||||||||
Sbjct: 65948 actccggcgtgttcgccggagggccgccggcgccggtgggggcgcagcggctgctcaagt 66007

                                                                         
Query: 99    tcgtggacacctcgcaggtgaccatgggcccgcacgacagccccggatactggctcgcca 158
             ||||||| || ||||||||||||||||| ||||| ||| | ||||| |||||||| | ||
Sbjct: 66008 tcgtggagacgtcgcaggtgaccatggggccgcaggactgtcccggctactggctggtca 66067

                                                                         
Query: 159   ccggcgccaggctcgacgtcgacaagggcaagatctcgctgcacgtcaagttctccctgc 218
             |||| || | |||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 66068 ccggagcaaagctcgacgtcgacaaggggaggatctcgctgcacgtcaagttctccctgc 66127

              
Query: 219   t 219
             |
Sbjct: 66128 t 66128
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>gb|AC078786.22| Homo sapiens 3 BAC RP11-474F17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 87072

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 308   ttttggattttggatttgtttgga 331
             ||||||||||||||||||||||||
Sbjct: 35685 ttttggattttggatttgtttgga 35662
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>gb|AC068781.19| Homo sapiens 3 BAC RP11-457K10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 197893

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 308   ttttggattttggatttgtttgga 331
             ||||||||||||||||||||||||
Sbjct: 64592 ttttggattttggatttgtttgga 64615
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>gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 172540

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 303   gctccttttggattttggatttg 325
             |||||||||||||||||||||||
Sbjct: 17840 gctccttttggattttggatttg 17818
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>gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54 of 83 of the
            complete sequence
          Length = 271869

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 303  gctccttttggattttggatttg 325
            |||||||||||||||||||||||
Sbjct: 3443 gctccttttggattttggatttg 3465
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>emb|BX004837.9| Zebrafish DNA sequence from clone CH211-134F7 in linkage group 19,
              complete sequence
          Length = 188325

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 238    acagttccagagtctgtacagt 259
              ||||||||||||||||||||||
Sbjct: 126229 acagttccagagtctgtacagt 126208
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>emb|CR382336.11| Zebrafish DNA sequence from clone CH211-125A6 in linkage group 19,
             complete sequence
          Length = 175656

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 238   acagttccagagtctgtacagt 259
             ||||||||||||||||||||||
Sbjct: 73453 acagttccagagtctgtacagt 73474
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>ref|XM_465614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2555

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 36   tcaactccggcgtgttcgcgggcggcccgcccgtgcc 72
            ||||||||||||||| | ||| ||| |||||||||||
Sbjct: 1830 tcaactccggcgtgtacccggacggtccgcccgtgcc 1866
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>emb|AL590484.10| Human DNA sequence from clone RP11-76E18 on chromosome 6 Contains the
             5' end of a gene for a novel protein, complete sequence
          Length = 65240

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 308   ttttggattttggatttgttt 328
             |||||||||||||||||||||
Sbjct: 24205 ttttggattttggatttgttt 24185
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>emb|AL162390.9| Human DNA sequence from clone RP11-386J22 on chromosome 9 Contains the
             SMC5L1 gene for SMC5 structural maintenance of chromosomes
             5-like 1 (yeast) (SMC5, KIAA0594), the BTEB1 gene for
             basic transcription element binding protein 1 (BTEB, KLF9)
             and three CpG islands, complete sequence
          Length = 182427

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 308   ttttggattttggatttgttt 328
             |||||||||||||||||||||
Sbjct: 36777 ttttggattttggatttgttt 36797
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>gb|AE005852.1| Caulobacter crescentus CB15 section 178 of 359 of the complete genome
          Length = 10029

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 151  gctcgccaccggcgccaggct 171
            |||||||||||||||||||||
Sbjct: 4562 gctcgccaccggcgccaggct 4542
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 256      cagttctcctgatgccaaatg 276
                |||||||||||||||||||||
Sbjct: 35877051 cagttctcctgatgccaaatg 35877031
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>dbj|AP004870.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419C03
          Length = 146929

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 36    tcaactccggcgtgttcgcgggcggcccgcccgtgcc 72
             ||||||||||||||| | ||| ||| |||||||||||
Sbjct: 49212 tcaactccggcgtgtacccggacggtccgcccgtgcc 49248
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>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0506B12
          Length = 170759

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 256    cagttctcctgatgccaaatg 276
              |||||||||||||||||||||
Sbjct: 141509 cagttctcctgatgccaaatg 141489
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>dbj|AK120516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124C02, full
            insert sequence
          Length = 2556

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 36   tcaactccggcgtgttcgcgggcggcccgcccgtgcc 72
            ||||||||||||||| | ||| ||| |||||||||||
Sbjct: 1831 tcaactccggcgtgtacccggacggtccgcccgtgcc 1867
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>dbj|AK105639.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-E04, full
            insert sequence
          Length = 2027

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 36   tcaactccggcgtgttcgcgggcggcccgcccgtgcc 72
            ||||||||||||||| | ||| ||| |||||||||||
Sbjct: 1469 tcaactccggcgtgtacccggacggtccgcccgtgcc 1505
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>dbj|AP001793.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-661O13, complete
             sequence
          Length = 195743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 308   ttttggattttggatttgttt 328
             |||||||||||||||||||||
Sbjct: 43747 ttttggattttggatttgttt 43767
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>emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 in linkage group 9,
             complete sequence
          Length = 150766

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 267   atgccaaatgctaactgaccc 287
             |||||||||||||||||||||
Sbjct: 18965 atgccaaatgctaactgaccc 18945
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>gb|AC149528.2| Xenopus tropicalis clone ISB-292P1, complete sequence
          Length = 87806

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   ccagagtctgtacagttctc 263
             ||||||||||||||||||||
Sbjct: 16386 ccagagtctgtacagttctc 16405
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>ref|NM_184913.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 510

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ggccgccgctggtggtggcc 31
          ||||||||||||||||||||
Sbjct: 34 ggccgccgctggtggtggcc 53
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    ggctcgacgtcgacaagggc 187
              ||||||||||||||||||||
Sbjct: 567729 ggctcgacgtcgacaagggc 567748
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>gb|AC161219.4| Mus musculus chromosome 7, clone RP23-83E16, complete sequence
          Length = 211735

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 406  aaggaaaaaagattcattgatact 429
            |||||||||||||||||| |||||
Sbjct: 5869 aaggaaaaaagattcattaatact 5892
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>gb|AY658885.1| Synthetic construct Peudomonas aeruginosa clone FLH047492.01F
           PA2339 gene, partial cds
          Length = 933

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 10  ggggccgccgctggtggtgg 29
           ||||||||||||||||||||
Sbjct: 768 ggggccgccgctggtggtgg 749
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>ref|XM_610755.2| PREDICTED: Bos taurus hypothetical LOC532244 (LOC532244), mRNA
          Length = 2913

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1    gcagaagcgggggccgccgctggt 24
            |||||||||||||| |||||||||
Sbjct: 1992 gcagaagcgggggctgccgctggt 2015
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      ctccggcgtgttcgcgggcg 59
               ||||||||||||||||||||
Sbjct: 1348475 ctccggcgtgttcgcgggcg 1348494
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 12       ggccgccgctggtggtggcc 31
                ||||||||||||||||||||
Sbjct: 31897325 ggccgccgctggtggtggcc 31897306
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>gb|AC074386.6| Homo sapiens BAC clone RP11-464H1 from 7, complete sequence
          Length = 66610

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 308   ttttggattttggatttgtttgga 331
             ||||||||||||||||| ||||||
Sbjct: 65706 ttttggattttggatttctttgga 65729
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>gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complete sequence
          Length = 130030

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 308   ttttggattttggatttgtttgga 331
             ||||||||||||||||| ||||||
Sbjct: 58685 ttttggattttggatttctttgga 58662
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>ref|XM_671871.1| Plasmodium berghei strain ANKA hypothetical protein (PB000681.00.0)
           partial mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 tccttttggattttggattt 324
           ||||||||||||||||||||
Sbjct: 815 tccttttggattttggattt 796
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>emb|Z97198.1|HS471M13 Human DNA sequence from clone RP3-471M13 on chromosome 1q24 Contains a
             small inducible cytokine subfamily E, member 1
             (endothelial monocyte-activating) (SCYE1) pseudogene and a
             novel transcript, complete sequence
          Length = 151514

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   ccttttggattttggatttg 325
             ||||||||||||||||||||
Sbjct: 50245 ccttttggattttggatttg 50226
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>emb|AL590709.5| Human DNA sequence from clone RP11-441N10 on chromosome 6 Contains
            part of the gene for tomosyn (LOC134957) (contains
            FLJ30922), complete sequence
          Length = 38629

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  ccttttggattttggatttg 325
            ||||||||||||||||||||
Sbjct: 5179 ccttttggattttggatttg 5198
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>emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chromosome 13, complete
             sequence
          Length = 104638

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 311   tggattttggatttgtttggaacctgta 338
             ||||||||||||||| |||| |||||||
Sbjct: 69167 tggattttggatttgcttgggacctgta 69194
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>emb|AL136223.11| Human DNA sequence from clone RP1-242G1 on chromosome 6p21.1-21.2
             Contains the 5' end of the UBR2 gene for ubiquitin protein
             ligase E3 component n-recognin 2, complete sequence
          Length = 103875

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 308   ttttggattttggatttgtttgga 331
             ||||||||||||||||| ||||||
Sbjct: 61003 ttttggattttggatttttttgga 61026
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>emb|AL132874.30|HSJ329L24 Human DNA sequence from clone RP3-329L24 on chromosome 6q22.1-22.33
             Contains three novel genes (FLJ20170, FLJ22085), the 3'
             end of a novel gene containing FLJ13942 and a CpG island,
             complete sequence
          Length = 112638

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 308   ttttggattttggatttgtttgga 331
             ||||||||||||||||| ||||||
Sbjct: 14994 ttttggattttggatttttttgga 14971
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>gb|AC011848.11| Homo sapiens chromosome 17, clone RP11-354C22, complete sequence
          Length = 163577

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 311   tggattttggatttgtttggaacctgta 338
             ||||||||||| |||| |||||||||||
Sbjct: 18707 tggattttggacttgtgtggaacctgta 18734
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>gb|AC009812.17| Homo sapiens chromosome 8, clone RP11-48B3, complete sequence
          Length = 155405

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    ccttttggattttggatttg 325
              ||||||||||||||||||||
Sbjct: 105046 ccttttggattttggatttg 105027
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>emb|AJ853840.1| Hordeum vulgare partial mRNA for putative WRKY4 protein
          Length = 701

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  gccgccgctggtggtggcca 32
           ||||||||||||||||||||
Sbjct: 198 gccgccgctggtggtggcca 179
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>gb|AC093014.11| Homo sapiens 12 BAC RP11-734E19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 97495

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 308   ttttggattttggatttgtttgga 331
             ||||||||||||||||| ||||||
Sbjct: 39420 ttttggattttggatttttttgga 39397
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>gb|AC148826.4| Pan troglodytes BAC clone CH251-484F13 from chromosome 7, complete
              sequence
          Length = 184163

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 308    ttttggattttggatttgtttgga 331
              ||||||||||||||||| ||||||
Sbjct: 151029 ttttggattttggatttctttgga 151006
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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 322     tttgtttggaacctgtaaat 341
               ||||||||||||||||||||
Sbjct: 1518874 tttgtttggaacctgtaaat 1518893
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>gb|AC092937.8| Homo sapiens 3q BAC RP11-114F20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188709

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 308    ttttggattttggatttgtttgga 331
              ||||||||||||||||| ||||||
Sbjct: 136635 ttttggattttggatttatttgga 136612
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>gb|AC005831.1| Homo sapiens 12p13.3 PAC RPCI5-1180D12 (Roswell Park Cancer Institute
              Human PAC Library) complete sequence
          Length = 144515

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 308    ttttggattttggatttgtttgga 331
              ||||||||||||||||| ||||||
Sbjct: 131364 ttttggattttggatttttttgga 131341
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     ggtgaccatgggcccgcacg 134
               ||||||||||||||||||||
Sbjct: 2866879 ggtgaccatgggcccgcacg 2866898
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>gb|AC148318.3| Pan troglodytes BAC clone CH251-496K6 from chromosome 7, complete
              sequence
          Length = 194952

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 308    ttttggattttggatttgtttgga 331
              ||||||||||||||||| ||||||
Sbjct: 126410 ttttggattttggatttctttgga 126387
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 12       ggccgccgctggtggtggcc 31
                ||||||||||||||||||||
Sbjct: 31987841 ggccgccgctggtggtggcc 31987822
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>gb|AF328473.1|AF328473 Homo sapiens clone 3qtel_c18t3 sequence
          Length = 289

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 308 ttttggattttggatttgtttgga 331
           ||||||||||||||||| ||||||
Sbjct: 156 ttttggattttggatttatttgga 179
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>gb|AE004660.1| Pseudomonas aeruginosa PAO1, section 221 of 529 of the complete
            genome
          Length = 10977

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   ggggccgccgctggtggtgg 29
            ||||||||||||||||||||
Sbjct: 3323 ggggccgccgctggtggtgg 3304
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 146     tactggctcgccaccggcgc 165
               ||||||||||||||||||||
Sbjct: 1310534 tactggctcgccaccggcgc 1310515
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>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence
          Length = 153206

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 406   aaggaaaaaagattcattgatact 429
             |||||||||||||||||| |||||
Sbjct: 29859 aaggaaaaaagattcattaatact 29836
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 16      gccgctggtggtggccagca 35
               ||||||||||||||||||||
Sbjct: 2539306 gccgctggtggtggccagca 2539325
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>dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181,
             complete sequence
          Length = 185320

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 403   agtaaggaaaaaagattcattgatactc 430
             ||||||||| ||||||||||| ||||||
Sbjct: 28236 agtaaggaataaagattcattcatactc 28263
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>dbj|AP004955.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT19K21, TM0132,
            complete sequence
          Length = 59303

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 403  agtaaggaaaaaagattcattgatactc 430
            ||||||||| ||||||||||| ||||||
Sbjct: 7716 agtaaggaataaagattcattcatactc 7743
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>emb|AL121981.17|HS1061C18 Human DNA sequence from clone RP5-1061C18 on chromosome 3p36.22-36.33
              Contains the 5' part of the DLG1 gene encoding the discs
              protein (large Drosophila homolog 1, presynaptic protein
              SAP97) and a CpG island, complete sequence
          Length = 148493

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 308    ttttggattttggatttgtttgga 331
              ||||||||||||||||| ||||||
Sbjct: 113013 ttttggattttggatttatttgga 113036
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>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete
             sequence
          Length = 150663

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ggccgccgctggtggtggcc 31
             ||||||||||||||||||||
Sbjct: 98578 ggccgccgctggtggtggcc 98559
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>emb|AL732469.8| Mouse DNA sequence from clone RP23-434B15 on chromosome X, complete
              sequence
          Length = 197111

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     gtggtggccagcatcaactc 42
              ||||||||||||||||||||
Sbjct: 193271 gtggtggccagcatcaactc 193290


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,622,085
Number of Sequences: 3902068
Number of extensions: 3622085
Number of successful extensions: 77673
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76990
Number of HSP's gapped (non-prelim): 683
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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