>IFEA_HELAS (P22488) Non-neuronal cytoplasmic intermediate filament protein|
           (IF)
          Length = 575

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = +2

Query: 329 INVQVKNSHADASHI-NRQDSRPKPVRDTTQDPLAQIKSVIDE--ALKPISEPLRSTARE 499
           ++ QVK   A+   + NR+    +P+RD  ++ LAQ + VIDE  + K +SE  +    +
Sbjct: 93  LDAQVKKLEAENEALRNRKSESLQPIRDAYENELAQARKVIDELSSTKGVSE-AKVAGLQ 151

Query: 500 DPLAHLKSAL 529
           D +A L+  +
Sbjct: 152 DEIASLRELI 161

>IFEB_HELPO (P16275) Non-neuronal cytoplasmic intermediate filament protein B|
           (IFB)
          Length = 450

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = +2

Query: 329 INVQVKNSHADASHI-NRQDSRPKPVRDTTQDPLAQIKSVIDE--ALKPISEPLRSTARE 499
           ++ QVK   A+   + NR+    +P+RD  ++ LAQ + VIDE  + K +SE  +    +
Sbjct: 92  LDAQVKKLEAENEALRNRKSESLQPIRDAYENELAQARKVIDELSSTKGVSE-AKVAGLQ 150

Query: 500 DPLAHLKSAL 529
           D +A L+  +
Sbjct: 151 DEIASLRELI 160

>MYBPH_MOUSE (P70402) Myosin-binding protein H (MyBP-H) (H-protein)|
          Length = 483

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 23/88 (26%), Positives = 34/88 (38%)
 Frame = +2

Query: 320 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE 499
           P ++     +    AS    Q+  P+P +   QDP A   S +  A KP  EP       
Sbjct: 21  PAKVPTTEPSGEVAASESTGQEQAPEPQKPQAQDPAAPAASAMPAATKP--EPPSEDVPS 78

Query: 500 DPLAHLKSALDEAMKSIHEPVPESLAKL 583
            PL      +  +  ++    PE L KL
Sbjct: 79  APLRLTLEDVSHSSLTVSWEPPEKLGKL 106

>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible|
           leucine zipper protein 4)
          Length = 780

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 2   PPLPQGFSAAMSGLSAPPFDGLASGPDP 85
           PP P G + A S    PPF G A+GP P
Sbjct: 277 PPPPVGGAVAQSSAPLPPFPGAATGPQP 304

>HISX_DEIRA (Q9RSI4) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 436

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
 Frame = +2

Query: 413 TQDPLAQIKSVIDEALKPISEPLRSTAREDPLAHLK----SALDEAMKSIHEPVPESLAK 580
           +++ L  +++ ++E L+ + EP RS AR+   A +K     +LDEA+   +   PE L  
Sbjct: 279 SRELLLAVQAELNEQLENLPEPNRSWARDSVGARMKVVLADSLDEALDLANLYAPEHLCL 338

Query: 581 LSRE 592
           L+R+
Sbjct: 339 LTRD 342

>SYP_METTH (O26708) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA|
           ligase) (ProRS)
          Length = 482

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +2

Query: 320 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE 499
           PLR+ +  ++    A+ I+R+D+  K   D     L  I+  + E +K I E LR+ A E
Sbjct: 351 PLRVEIGPRDLEKGAAVISRRDTGEKVTAD-----LQGIEETLRELMKDILENLRTRAWE 405

Query: 500 DPLAHLKSA--LDEAMKSIHE 556
              + ++ A  L+EA + + E
Sbjct: 406 RMESEIREAETLEEASRIVDE 426

>TSH2_HUMAN (Q9NRE2) Teashirt homolog 2 (Zinc finger protein 218) (Ovarian|
           cancer-related protein 10-2) (OVC10-2)
          Length = 1034

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +2

Query: 419 DPLAQIKSVIDEALKPISEPLRSTAREDPLAHL-----KSALDEAMKSIHEPVPESLAKL 583
           +PL+ ++SV++  L   +EPLRS +   P +       KS L+   K +  P     A +
Sbjct: 693 NPLSALQSVLNNHLGKATEPLRSPSCSSPSSSTISMFHKSNLNVMDKPVLSPASTRSASV 752

Query: 584 SREVLDAAPPQLTDLIK 634
           SR  L     Q  DL K
Sbjct: 753 SRRYLFENSDQPIDLTK 769

>TRXB_ASHGO (Q75CM8) Thioredoxin reductase (EC 1.8.1.9)|
          Length = 319

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -1

Query: 217 RAKLKSTCNFGTKSR*IQSEVCSVDIAIEPLKCVTIFDLDDDVPXXXXXXXXXXXXXAQA 38
           R K +S   FGT+   +   V  VD++  P K  T F+ D++                + 
Sbjct: 70  RMKAQSV-KFGTEV--VTETVAKVDLSARPFKLWTEFNEDEEPTTTDAIILATGASAKRL 126

Query: 37  GHGGRETLWER 5
           G  G ET W+R
Sbjct: 127 GLPGEETYWQR 137

>IF2_CHLAB (Q5L627) Translation initiation factor IF-2|
          Length = 874

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +2

Query: 362 ASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTAREDPLAH-LKSALDEA 538
           A H++ + S P+ +R   +   A   S I     P+S    STA   P+   + S L+ A
Sbjct: 64  AEHVSTETS-PRRIRAKNRSSFASEDSTIPS---PVSVDTESTAFSPPVVEEVVSPLESA 119

Query: 539 MKSIHEPVPESLAKLSREVLDAAPP 613
              I EP P S+       +   PP
Sbjct: 120 EPEIVEPTPASIVDEPETTIQEPPP 144

>Y1618_THETN (Q8R9J2) UPF0078 membrane protein TTE1618|
          Length = 198

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
 Frame = -1

Query: 376 VNVRCISMAILYLNIN---PERVQFLMDSCIMQVLVIVQH-DNIPILISVSENEVSIRAK 209
           V++  ++ AI +  +N   P  VQ L  + ++ +LVI QH  NI  LI+ +E+++  RA+
Sbjct: 137 VSLGSMTGAITFALLNIFFPNSVQVLTFAIVLALLVIFQHRSNIKRLINGTESKIGQRAQ 196

Query: 208 LK 203
           +K
Sbjct: 197 IK 198

>YQBD_BACSU (P45920) Hypothetical protein yqbD|
          Length = 322

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 25/115 (21%), Positives = 52/115 (45%)
 Frame = +2

Query: 338 QVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTAREDPLAHL 517
           ++KN+HA   ++  Q    +   + T +   ++   I EAL+PI + L +  +E+     
Sbjct: 206 EIKNAHAALGNLLSQVETKEGEEEMTSE---EVTKSIQEALEPIKKRLETLEKEE----- 257

Query: 518 KSALDEAMKSIHEPVPESLAKLSREVLDAAPPQLTDLIKPFVNLITSTNSSQSAG 682
              L++  K   E   +   KL + + +A  P L D I+       ++  ++ +G
Sbjct: 258 --ELNKKDKEKEEETEKEGEKLKKAISEAVQP-LADRIEAIEKSRGTSKQTEESG 309

>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2|
          Length = 1125

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +2

Query: 398 PVRDTTQDPLAQIKSVIDEALKPISEPLRSTAREDPLAHLKSALDEAMKSIHEPVPESLA 577
           P +   +  +  +K     A+K ++ P+R       ++H+K +          P+P S A
Sbjct: 64  PSKSEPEKTILSVKKAAPTAIKDVAPPIRKATSSSEISHVKPSAPA------NPIPTSPA 117

Query: 578 KLSRE-VLDAAPP 613
           + S E V   APP
Sbjct: 118 RPSTESVAHPAPP 130

>MYH3_CHICK (P02565) Myosin heavy chain, fast skeletal muscle, embryonic|
          Length = 1940

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 22/81 (27%), Positives = 37/81 (45%)
 Frame = +2

Query: 365  SHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTAREDPLAHLKSALDEAMK 544
            SH NRQ +  +     TQ  L   +  +D+AL+   +     A  +  A+L  A  E ++
Sbjct: 1635 SHANRQAAEAQKNLRNTQGVLKDTQIHLDDALRSQEDLKEQVAMVERRANLLQAEIEELR 1694

Query: 545  SIHEPVPESLAKLSREVLDAA 607
            +  E    S     +E+LDA+
Sbjct: 1695 AALEQTERSRKVAEQELLDAS 1715

>REPS2_HUMAN (Q8NFH8) RalBP1-associated Eps domain-containing protein 2|
           (RalBP1-interacting protein 2) (Partner of RalBP1)
          Length = 660

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
 Frame = +2

Query: 320 PLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEAL-KPISE----PLR 484
           P  +N   K S  D + +      P P +D T D    +KS I+EAL K +SE    P  
Sbjct: 396 PRDLNRMEKTSVKDMADL------PVPNQDVTSDDKQALKSTINEALPKDVSEDPATPKD 449

Query: 485 ST---AREDPLAHLKSALDEAMKSIHEP 559
           S    AR    ++  ++++EAMK   +P
Sbjct: 450 SNSLKARPRSRSYSSTSIEEAMKRGEDP 477

>MYBPH_RAT (O88599) Myosin-binding protein H (MyBP-H) (H-protein)|
          Length = 484

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +2

Query: 359 DASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTAREDPLAHLKSALDEA 538
           +AS    + + P+P +  T +P  Q+ +      +   EP +    +DP AH   A    
Sbjct: 8   EASVSTSEGTAPEPAKVPTPEPSGQVAASESTGQEQAPEPQKQPQAQDPAAHEAPATPAT 67

Query: 539 MK--SIHEPVPESLAKLSRE 592
            K  +  E VP +  +L+ E
Sbjct: 68  TKPEAPSEDVPSAPLQLTLE 87

>RPOD_SALTY (P0A2E3) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 615

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
 Frame = +2

Query: 329 INVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE--- 499
           + +QV     DA  +   ++      D  ++  AQ+ S ++  +   ++P+R   RE   
Sbjct: 51  MGIQVMEEAPDADDLLLAENTTSTDEDA-EEAAAQVLSSVESEIGRTTDPVRMYMREMGT 109

Query: 500 ----------DPLAHLKSALDEAMKSIHEPVPESLAKLSREV--LDAAPPQLTDLIKPFV 643
                     D    ++  +++   S+ E  PE++  L  +   ++A   +L+DLI  FV
Sbjct: 110 VELLTREGEIDIAKRIEDGINQVQCSVAE-YPEAITYLLEQYDRVEAEEARLSDLITGFV 168

Query: 644 NLITSTNSSQSAGHAG 691
           +       + +A H G
Sbjct: 169 DPNAEEEMAPTATHVG 184

>RPOD_SALTI (P0A2E4) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 615

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
 Frame = +2

Query: 329 INVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTARE--- 499
           + +QV     DA  +   ++      D  ++  AQ+ S ++  +   ++P+R   RE   
Sbjct: 51  MGIQVMEEAPDADDLLLAENTTSTDEDA-EEAAAQVLSSVESEIGRTTDPVRMYMREMGT 109

Query: 500 ----------DPLAHLKSALDEAMKSIHEPVPESLAKLSREV--LDAAPPQLTDLIKPFV 643
                     D    ++  +++   S+ E  PE++  L  +   ++A   +L+DLI  FV
Sbjct: 110 VELLTREGEIDIAKRIEDGINQVQCSVAE-YPEAITYLLEQYDRVEAEEARLSDLITGFV 168

Query: 644 NLITSTNSSQSAGHAG 691
           +       + +A H G
Sbjct: 169 DPNAEEEMAPTATHVG 184

>TCPD_CAEEL (P47208) T-complex protein 1 subunit delta (TCP-1-delta)|
           (CCT-delta)
          Length = 540

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +2

Query: 314 LNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTA 493
           L+P+    +++N+HA+ +     + R   V D  ++ + Q   V   A+K  SE +RS  
Sbjct: 471 LSPIHTVTELRNNHANGNSSYGVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSIL 530

Query: 494 REDPL 508
           + D +
Sbjct: 531 KIDDI 535

>METW_YEAST (Q12198) Putative cystathionine gamma-synthase YLL058W (EC|
           2.5.1.48) (O-succinylhomoserine (thiol)-lyase)
          Length = 575

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 116 DTLKRFNGYVNGTHFTLNLS----ALRSKIASAFKFGPDADFI 232
           D+LK F G  NGT+FTL       A  S++    KFG D + I
Sbjct: 502 DSLKVFKGPSNGTNFTLACPYVHLAHHSELEEVSKFGADPNII 544

>RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase|
          Length = 886

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
 Frame = +2

Query: 308 QKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEA--LKPISEPL 481
           Q ++ L+      +SH DA  ++ +    + V++       Q K ++  A  +K +   L
Sbjct: 499 QMVDELKALENELSSH-DAEKLSAESEEYRKVKERLDGLRGQQKILLSSASRIKELKSSL 557

Query: 482 RSTAREDPLAHLKSALDEAMKSIHEPVPESLAKLSREVLDAAP 610
           R    E+ L +++S   E  + I E   ESL +L REV    P
Sbjct: 558 REI--EEALKNVESERGELHRKIREEGFESLEELEREVQSLRP 598

>LRC40_PONPY (Q5RFE9) Leucine-rich repeat-containing protein 40|
          Length = 602

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
 Frame = +2

Query: 419 DPLAQIK-SVIDEALKPISEPLRSTAREDPLAHLKSALDEAMKSIHEPVPESLAKLSREV 595
           +PL  I+  +I++  + + + LRS  ++D  +  +SA + AM    E      A ++ ++
Sbjct: 344 NPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESATETAMTLPSESRVNIRAIITLKI 403

Query: 596 LDAA-------PPQLTDLIKPFVNLITSTNSSQS 676
           LD +       P ++ D +K   N+ITS N S++
Sbjct: 404 LDYSDKQATLIPDEVFDAVKS--NIITSINFSKN 435

>YOX1_YEAST (P34161) Homeobox protein YOX1|
          Length = 385

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +2

Query: 305 HQKLNPLRINVQVKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVID----EALKPIS 472
           H  LN       +K S A   H+N Q     PV+ +    + ++ + ID    +A +P+S
Sbjct: 294 HHSLNRRSSTPSIKRSQALTFHLNPQKKTLTPVKTSPNSRVNKLINSIDHSPSKAKRPVS 353

Query: 473 EPLRSTARE 499
            P  S  R+
Sbjct: 354 NPSGSPKRK 362

>K2C1_MOUSE (P04104) Keratin, type II cytoskeletal 1 (Cytokeratin-1) (CK-1)|
           (Keratin-1) (K1) (67 kDa cytokeratin)
          Length = 627

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
 Frame = +2

Query: 341 VKNSHADASHINRQDSRPKPVRDTTQDPLAQIKSVIDEALKPISEPLRSTAR-----EDP 505
           V+N+  + S +NR   R +   D  +  ++QI+  I++A +   + L+         ED 
Sbjct: 398 VRNTKMEISELNRMIQRLRSEIDGCKKQISQIQQNINDAEQRGEKALKDAQNKLNEIEDA 457

Query: 506 LAHLKSALDEAMKSIHEPVPESLA-----KLSREVLDAAPPQLTDLIKPFVNLITSTNSS 670
           L+  K  L   ++   E +   LA        +++L+    +++    P V++  ST+ +
Sbjct: 458 LSQCKEDLARLLRDFQELMNTKLALDMEIATYKKLLEGEEIRMSGECTPNVSVSVSTSHT 517

Query: 671 QSAG 682
             +G
Sbjct: 518 SMSG 521


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,750,173
Number of Sequences: 219361
Number of extensions: 1530997
Number of successful extensions: 6055
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6052
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)