ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal11d19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1070 bits (540), Expect = 0.0 Identities = 560/564 (99%), Gaps = 2/564 (0%) Strand = Plus / Plus Query: 10 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 69 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 974 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 1033 Query: 70 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacg 129 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1034 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtctgtgacg 1093 Query: 130 agtctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctc 189 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1094 agtctgtcgtaaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctc 1153 Query: 190 tgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggctctaccggaatcgaga 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 tgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggctctaccggaatcgaga 1213 Query: 250 acattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaaga 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1214 acattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaaga 1273 Query: 310 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 1333 Query: 370 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 1393 Query: 430 atgcgatgaagactggttccttctacggttagaaaattctccatac-acacccaccatct 488 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1394 atgcgatgaagactggttccttctacggttagaaaattctccatacaacacccaccatct 1453 Query: 489 cttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccg-tgccggaaggt 547 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1454 cttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgatgccggaaggt 1513 Query: 548 tgcaccgaccaaaatgccaagaac 571 |||||||||||||||||||||||| Sbjct: 1514 tgcaccgaccaaaatgccaagaac 1537
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 908 bits (458), Expect = 0.0 Identities = 530/554 (95%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 52 tacgcccctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgcgac 111 Query: 78 gaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtc 137 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 112 gaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagcgacgagtccgtc 171 Query: 138 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgct 197 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 172 gtcaagatcgtcgacaccttcccaggacaatccatcgactttttcggtgctctgcgtgct 231 Query: 198 cgggtgtacgacgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggc 257 |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| Sbjct: 232 cgggtgtacgacgacgaggtgcgcaagtgggtgacctctaccggtatcgagaacattggc 291 Query: 258 aagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtc 317 |||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||| Sbjct: 292 aagaagctggtgaactcgcgggacggaccagtgacctttgagcagccaaagatgacagtg 351 Query: 318 gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 352 gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 411 Query: 378 cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 412 cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 471 Query: 438 aagactggttccttctacggttagaaaattctccatacacacccaccatctcttgctgca 497 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 472 aagactggtaccttctacggttagaacattctccatacacacccaccatctcttgctgca 531 Query: 498 taggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgacc 557 |||||||||||||||| |||||||||||||||||||| || |||| ||| |||||||||| Sbjct: 532 taggaggaggtaaaggggcacagcaaggtactttgcctgtaccggcaggatgcaccgacc 591 Query: 558 aaaatgccaagaac 571 | | |||||||||| Sbjct: 592 agactgccaagaac 605
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 908 bits (458), Expect = 0.0 Identities = 530/554 (95%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 902 tacgcccctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgcgac 961 Query: 78 gaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtc 137 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 962 gaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagcgacgagtccgtc 1021 Query: 138 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgct 197 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1022 gtcaagatcgtcgacaccttcccaggacaatccatcgactttttcggtgctctgcgtgct 1081 Query: 198 cgggtgtacgacgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggc 257 |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| Sbjct: 1082 cgggtgtacgacgacgaggtgcgcaagtgggtgacctctaccggtatcgagaacattggc 1141 Query: 258 aagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtc 317 |||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||| Sbjct: 1142 aagaagctggtgaactcgcgggacggaccagtgacctttgagcagccaaagatgacagtg 1201 Query: 318 gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1202 gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 1261 Query: 378 cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1262 cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 1321 Query: 438 aagactggttccttctacggttagaaaattctccatacacacccaccatctcttgctgca 497 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1322 aagactggtaccttctacggttagaacattctccatacacacccaccatctcttgctgca 1381 Query: 498 taggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgacc 557 |||||||||||||||| |||||||||||||||||||| || |||| ||| |||||||||| Sbjct: 1382 taggaggaggtaaaggggcacagcaaggtactttgcctgtaccggcaggatgcaccgacc 1441 Query: 558 aaaatgccaagaac 571 | | |||||||||| Sbjct: 1442 agactgccaagaac 1455
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 874 bits (441), Expect = 0.0 Identities = 447/449 (99%) Strand = Plus / Plus Query: 10 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 69 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 719 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 778 Query: 70 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacg 129 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 779 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtctgtgacg 838 Query: 130 agtctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctc 189 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 839 agtctgtcgtaaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctc 898 Query: 190 tgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggctctaccggaatcgaga 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 899 tgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggctctaccggaatcgaga 958 Query: 250 acattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaaga 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 959 acattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaaga 1018 Query: 310 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1019 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 1078 Query: 370 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1079 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 1138 Query: 430 atgcgatgaagactggttccttctacggt 458 ||||||||||||||||||||||||||||| Sbjct: 1139 atgcgatgaagactggttccttctacggt 1167 Score = 131 bits (66), Expect = 3e-27 Identities = 66/66 (100%) Strand = Plus / Plus Query: 506 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 1224 Query: 566 aagaac 571 |||||| Sbjct: 1225 aagaac 1230
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 722 bits (364), Expect = 0.0 Identities = 513/562 (91%), Gaps = 2/562 (0%) Strand = Plus / Plus Query: 10 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 69 ||||||| ||||| || || |||||||| |||||||||||||||||||||||||| |||| Sbjct: 905 cgacgctgtacgcgcccctcatccgtgacggtcgtatggagaagttctactgggcgccca 964 Query: 70 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacg 129 |||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct: 965 cccgcgaggaccgtatcggcgtctgcaagggtatcttccagaccgacaacgtcagcgacg 1024 Query: 130 agtctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctc 189 ||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| Sbjct: 1025 agtctgtcgtcaagatcgtcgacacnttcccaggacagtccatcgacttcttcggtgctc 1084 Query: 190 tgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggctctaccggaatcgaga 249 ||||||||||||||||||||| |||||||||||||||||| || |||||||| |||| Sbjct: 1085 tgcgtgctcgggtgtacgacgttgaggtgcgcaagtgggtgtcgtccaccggaattgaga 1144 Query: 250 acattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaaga 309 |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct: 1145 acatcggcaagaggctggtgaactcgcgggacggacccgtcaccttcgagcagcccaaga 1204 Query: 310 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 369 |||| || |||||| |||| |||||||| |||||||| |||||||||||||||||||||| Sbjct: 1205 tgacggtggagaagttgctggagtacggccacatgcttgtccaggagcaggacaatgtca 1264 Query: 370 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 429 |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||| Sbjct: 1265 agcgtgtgcagcttgcggacacttacatgagccaggcagctctgggtgatgcgaacaagg 1324 Query: 430 atgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatctc 489 |||| ||||||||||||||||||||||||||||| | ||| ||| |||||||||||||| Sbjct: 1325 atgccatgaagactggttccttctacggttagaacactcttcat--acacccaccatctc 1382 Query: 490 ttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttg 549 |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 1383 ttgctgcataggaggaggtaaaggagcacaacaaggcactttgcctgtgccggaaggttg 1442 Query: 550 caccgaccaaaatgccaagaac 571 ||||||| ||||||||||| Sbjct: 1443 taccgaccgggatgccaagaac 1464
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Plus Query: 174 gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7021 gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 7080 Query: 234 tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7081 tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 7140 Query: 294 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7141 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 7200 Query: 354 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7201 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 7260 Query: 414 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7261 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 7320 Query: 474 acacacccaccatctcttgctgcataggaggaggt 508 ||||||||||||||||||||||||||||||||||| Sbjct: 7321 acacacccaccatctcttgctgcataggaggaggt 7355 Score = 327 bits (165), Expect = 2e-86 Identities = 165/165 (100%) Strand = Plus / Plus Query: 10 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 69 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6716 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 6775 Query: 70 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacg 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6776 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacg 6835 Query: 130 agtctgtcgtcaagatcgtcgacaccttcccaggacaatccattg 174 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6836 agtctgtcgtcaagatcgtcgacaccttcccaggacaatccattg 6880 Score = 159 bits (80), Expect = 1e-35 Identities = 188/224 (83%) Strand = Plus / Plus Query: 10 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 69 ||||||| |||||||| ||||||||||| || || |||||||||||||||||||| |||| Sbjct: 3589 cgacgctgtacgctcccctgatccgtgacgggcgcatggagaagttctactgggcgccca 3648 Query: 70 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacg 129 |||| || ||||| ||||| || |||||||| ||||||| |||||||| ||| |||| Sbjct: 3649 cccgcgaggaccgcatcggcgtgtgcaagggcatcttccgcaccgacaacgtcccggacg 3708 Query: 130 agtctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctc 189 || | || || | | | || ||||||||||| || || ||||| ||||| ||||| || | Sbjct: 3709 aggccgtggtgaggctggtggacaccttcccggggcagtccatcgacttcttcggcgcgc 3768 Query: 190 tgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 233 |||| || |||||||||||||| ||||||||||||||||||||| Sbjct: 3769 tgcgggcacgggtgtacgacgacgaggtgcgcaagtgggtcggc 3812 Score = 135 bits (68), Expect = 2e-28 Identities = 68/68 (100%) Strand = Plus / Plus Query: 504 gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7523 gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 7582 Query: 564 ccaagaac 571 |||||||| Sbjct: 7583 ccaagaac 7590 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 294 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 353 ||||| ||||| |||||||| | |||||||| | |||||||| |||||||| |||||| Sbjct: 3873 ttcgaccagcccaagatgaccatagagaagctcatggagtacggccacatgctggtccag 3932 Query: 354 gagcaggacaatgtcaagcgtgtgcagct 382 |||||||| || ||||||||||||||||| Sbjct: 3933 gagcaggagaacgtcaagcgtgtgcagct 3961
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 581 bits (293), Expect = e-163 Identities = 410/449 (91%) Strand = Plus / Plus Query: 10 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 69 ||||||| ||||| || || || | ||| ||||||||||||||||| |||||||| |||| Sbjct: 915 cgacgctgtacgccccccttattcctgacggtcgtatggagaagttttactgggcgccca 974 Query: 70 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacg 129 |||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct: 975 cccgcgaggaccgtatcggcgtctgcaagggtatcttccagaccgacaacgtcagcgacg 1034 Query: 130 agtctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctc 189 ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 1035 agtctgtcgtcaagatcgtcgacaccttcccaggacagtccatcgacttcttcggtgctc 1094 Query: 190 tgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggctctaccggaatcgaga 249 |||||||||||||||||||||| ||||||||||||||||| || |||||||| |||| Sbjct: 1095 tgcgtgctcgggtgtacgacgacgaggtgcgcaagtgggtgtcgtccaccggaattgaga 1154 Query: 250 acattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaaga 309 |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct: 1155 acatcggcaagaggctggtgaactcgcgggacggacccgtcaccttcgagcagcccaaga 1214 Query: 310 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 369 |||| || |||||| |||| |||||||| |||||||| |||||||||||||||||||||| Sbjct: 1215 tgacggtggagaagttgctggagtacggccacatgcttgtccaggagcaggacaatgtca 1274 Query: 370 agcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccagg 429 |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||| Sbjct: 1275 agcgtgtgcagcttgcggacacttacatgagccaggcagctctgggtgatgcgaacaagg 1334 Query: 430 atgcgatgaagactggttccttctacggt 458 |||| |||||||||||||||||||||||| Sbjct: 1335 atgccatgaagactggttccttctacggt 1363 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 506 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 565 |||||||||||||| ||||| |||||||| |||||||||||||| ||||||| ||||| Sbjct: 1361 ggtaaaggagcacaacaaggcactttgcctgtgccggaaggttgtaccgaccgggatgcc 1420 Query: 566 aagaac 571 |||||| Sbjct: 1421 aagaac 1426
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 521 bits (263), Expect = e-145 Identities = 296/307 (96%) Strand = Plus / Plus Query: 174 gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 233 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 2 gactttttcggtgctctgcgtgctcgggtgtacgacgacgaggtgcgcaagtgggtgacc 61 Query: 234 tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 293 |||||||| ||||||||||||||||||| ||| ||||||||||||||||| || |||||| Sbjct: 62 tctaccggtatcgagaacattggcaagaagcttgtgaactcgcgggacggaccagtgacc 121 Query: 294 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 353 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 tttgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 181 Query: 354 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 241 Query: 414 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 473 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 242 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaacattctccat 301 Query: 474 acacacc 480 ||||||| Sbjct: 302 acacacc 308
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 194 bits (98), Expect = 2e-46 Identities = 188/218 (86%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 869 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 928 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 929 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 988 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| Sbjct: 989 gacatcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctctt 1048 Query: 192 cgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| || || |||||||| ||||||||||||||||| Sbjct: 1049 cgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 1086 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Plus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 1103 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1162 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 1163 aagatgacgatcgaaaagctcatcgagtacggatacatgcttgtgaaggagcaggagaac 1222 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1223 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1282 Query: 426 caggatgcgatgaagactggttccttctacggtt 459 || || ||||||||||||||||||||||||| Sbjct: 1283 tccgacgccatgaagactggttccttctacggtt 1316 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 531 tgcccgtgccggaaggttgcaccgacc 557 |||| |||||||||||||||||||||| Sbjct: 1426 tgcctgtgccggaaggttgcaccgacc 1452
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 194 bits (98), Expect = 2e-46 Identities = 188/218 (86%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 864 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 923 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 924 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 983 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| Sbjct: 984 gacatcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctctt 1043 Query: 192 cgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| || || |||||||| ||||||||||||||||| Sbjct: 1044 cgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 1081 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Plus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 1098 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1157 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 1158 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1217 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1218 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1277 Query: 426 caggatgcgatgaagactggttccttctacgg 457 || || ||||||||||||||||||||||| Sbjct: 1278 tccgacgccatgaagactggttccttctacgg 1309 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 531 tgcccgtgccggaaggttgcaccgacc 557 |||| |||||||||||||||||||||| Sbjct: 1336 tgcctgtgccggaaggttgcaccgacc 1362
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 194 bits (98), Expect = 2e-46 Identities = 188/218 (86%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 118 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 177 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 178 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 237 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| Sbjct: 238 gacatcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctctt 297 Query: 192 cgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| || || |||||||| ||||||||||||||||| Sbjct: 298 cgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 335 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Plus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 352 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 411 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 412 aagatgacgatcgaaaagctcatcgagtacggatacatgcttgtgaaggagcaggagaac 471 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 472 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 531 Query: 426 caggatgcgatgaagactggttccttctacggtt 459 || || ||||||||||||||||||||||||| Sbjct: 532 tccgacgccatgaagactggttccttctacggtt 565
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 194 bits (98), Expect = 2e-46 Identities = 188/218 (86%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 912 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 971 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 972 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 1031 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| Sbjct: 1032 gacatcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctctt 1091 Query: 192 cgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| || || |||||||| ||||||||||||||||| Sbjct: 1092 cgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 1129 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Plus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 1146 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1205 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 1206 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1265 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1266 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1325 Query: 426 caggatgcgatgaagactggttccttctacggtt 459 || || ||||||||||||||||||||||||| Sbjct: 1326 tccgacgccatgaagactggttccttctacggtt 1359 Score = 48.1 bits (24), Expect = 0.032 Identities = 53/62 (85%), Gaps = 3/62 (4%) Strand = Plus / Plus Query: 499 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 555 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1434 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1493 Query: 556 cc 557 || Sbjct: 1494 cc 1495
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 194 bits (98), Expect = 2e-46 Identities = 188/218 (86%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 863 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 922 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 923 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 982 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| Sbjct: 983 gacatcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctctt 1042 Query: 192 cgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| || || |||||||| ||||||||||||||||| Sbjct: 1043 cgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 1080 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Plus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 1097 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1156 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 1157 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1216 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1217 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1276 Query: 426 caggatgcgatgaagactggttccttctacggtt 459 || || ||||||||||||||||||||||||| Sbjct: 1277 tccgacgccatgaagactggttccttctacggtt 1310 Score = 48.1 bits (24), Expect = 0.032 Identities = 53/62 (85%), Gaps = 3/62 (4%) Strand = Plus / Plus Query: 499 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 555 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1385 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1444 Query: 556 cc 557 || Sbjct: 1445 cc 1446
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 194 bits (98), Expect = 2e-46 Identities = 188/218 (86%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 901 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 960 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 961 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 1020 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| Sbjct: 1021 gacatcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctctt 1080 Query: 192 cgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| || || |||||||| ||||||||||||||||| Sbjct: 1081 cgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 1118 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Plus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 1135 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1194 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 1195 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1254 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1255 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1314 Query: 426 caggatgcgatgaagactggttccttctacggtt 459 || || ||||||||||||||||||||||||| Sbjct: 1315 tccgacgccatgaagactggttccttctacggtt 1348 Score = 48.1 bits (24), Expect = 0.032 Identities = 53/62 (85%), Gaps = 3/62 (4%) Strand = Plus / Plus Query: 499 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 555 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1423 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1482 Query: 556 cc 557 || Sbjct: 1483 cc 1484
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 194 bits (98), Expect = 2e-46 Identities = 188/218 (86%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 900 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 959 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 960 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 1019 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| Sbjct: 1020 gacatcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctctt 1079 Query: 192 cgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| || || |||||||| ||||||||||||||||| Sbjct: 1080 cgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 1117 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Plus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 1134 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1193 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 1194 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1253 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1254 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1313 Query: 426 caggatgcgatgaagactggttccttctacggtt 459 || || ||||||||||||||||||||||||| Sbjct: 1314 tccgacgccatgaagactggttccttctacggtt 1347 Score = 48.1 bits (24), Expect = 0.032 Identities = 53/62 (85%), Gaps = 3/62 (4%) Strand = Plus / Plus Query: 499 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 555 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1422 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1481 Query: 556 cc 557 || Sbjct: 1482 cc 1483
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 194 bits (98), Expect = 2e-46 Identities = 188/218 (86%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 684 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 743 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 744 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 803 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| Sbjct: 804 gacatcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctctt 863 Query: 192 cgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| || || |||||||| ||||||||||||||||| Sbjct: 864 cgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 901 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Plus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 918 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 977 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 978 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1037 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1038 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1097 Query: 426 caggatgcgatgaagactggttccttctacggtt 459 || || ||||||||||||||||||||||||| Sbjct: 1098 tccgacgccatgaagactggttccttctacggtt 1131 Score = 48.1 bits (24), Expect = 0.032 Identities = 53/62 (85%), Gaps = 3/62 (4%) Strand = Plus / Plus Query: 499 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 555 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1206 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1265 Query: 556 cc 557 || Sbjct: 1266 cc 1267
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 194 bits (98), Expect = 2e-46 Identities = 188/218 (86%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 905 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 964 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 965 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 1024 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| Sbjct: 1025 gacatcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctctt 1084 Query: 192 cgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| || || |||||||| ||||||||||||||||| Sbjct: 1085 cgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 1122 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Plus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 1139 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1198 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 1199 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1258 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1259 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1318 Query: 426 caggatgcgatgaagactggttccttctacggtt 459 || || ||||||||||||||||||||||||| Sbjct: 1319 tccgacgccatgaagactggttccttctacggtt 1352 Score = 48.1 bits (24), Expect = 0.032 Identities = 53/62 (85%), Gaps = 3/62 (4%) Strand = Plus / Plus Query: 499 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 555 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1427 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1486 Query: 556 cc 557 || Sbjct: 1487 cc 1488
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 194 bits (98), Expect = 2e-46 Identities = 188/218 (86%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 899 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 958 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 959 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 1018 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||||||||||||||| ||||||||| |||||||| || || ||||| ||||| Sbjct: 1019 gacatcgtcaagatcgtcgacagcttcccaggccaatccatcgatttcttcggcgctctt 1078 Query: 192 cgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| || || |||||||| ||||||||||||||||| Sbjct: 1079 cgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 1116 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Plus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 1133 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1192 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 1193 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1252 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1253 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1312 Query: 426 caggatgcgatgaagactggttccttctacgg 457 || || ||||||||||||||||||||||| Sbjct: 1313 tccgacgccatgaagactggttccttctacgg 1344 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 531 tgcccgtgccggaaggttgcaccgacc 557 |||| |||||||||||||||||||||| Sbjct: 1371 tgcctgtgccggaaggttgcaccgacc 1397
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 176 bits (89), Expect = 5e-41 Identities = 302/373 (80%) Strand = Plus / Plus Query: 10 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 69 ||||||| ||||| || || ||||| || || || |||||||||||||||||||| |||| Sbjct: 870 cgacgctgtacgcgcccctcatccgggacggccgcatggagaagttctactgggcgccca 929 Query: 70 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacg 129 |||| || ||||| ||||| || |||||||| ||||||| |||||||| ||| |||| Sbjct: 930 cccgggaggaccgcatcggcgtgtgcaagggcatcttccgcaccgacaacgtccccgacg 989 Query: 130 agtctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctc 189 || | || || | | | || ||||||||||| || || ||||| ||||| ||||| || | Sbjct: 990 aggccgtggtgaggctggtggacaccttcccggggcagtccatcgacttcttcggcgcgc 1049 Query: 190 tgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggctctaccggaatcgaga 249 |||| || |||||||||||||| ||||||||||||||||||||| | ||| |||||| Sbjct: 1050 tgcgggcgcgggtgtacgacgacgaggtgcgcaagtgggtcggcgagatcggcgtcgaga 1109 Query: 250 acattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaaga 309 |||| |||| |||| || ||||| |||| ||||| ||| ||||| ||||| |||| Sbjct: 1110 acatctccaagcggctcgtcaactccagggaggggccgccgacgttcgaccagcccaaga 1169 Query: 310 tgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtca 369 |||| |||||||||| | |||||||| |||||||| |||||||||||||| || || | Sbjct: 1170 tgaccatcgagaagctcatggagtacggccacatgctggtccaggagcaggagaacgtga 1229 Query: 370 agcgtgtgcagct 382 |||| |||||||| Sbjct: 1230 agcgcgtgcagct 1242
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 159 bits (80), Expect = 1e-35 Identities = 188/224 (83%) Strand = Plus / Plus Query: 10 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 69 ||||||| |||||||| ||||||||||| || || |||||||||||||||||||| |||| Sbjct: 1020 cgacgctgtacgctcccctgatccgtgacgggcgcatggagaagttctactgggcgccca 1079 Query: 70 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacg 129 |||| || ||||| ||||| || |||||||| ||||||| |||||||| ||| |||| Sbjct: 1080 cccgcgaggaccgcatcggcgtgtgcaagggcatcttccgcaccgacaacgtcccggacg 1139 Query: 130 agtctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctc 189 || | || || | | | || ||||||||||| || || ||||| ||||| ||||| || | Sbjct: 1140 aggccgtggtgaggctggtggacaccttcccggggcagtccatcgacttcttcggcgcgc 1199 Query: 190 tgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 233 |||| || |||||||||||||| ||||||||||||||||||||| Sbjct: 1200 tgcgggcacgggtgtacgacgacgaggtgcgcaagtgggtcggc 1243 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 294 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 353 ||||| ||||| |||||||| | |||||||| | |||||||| |||||||| |||||| Sbjct: 1304 ttcgaccagcccaagatgaccatagagaagctcatggagtacggccacatgctggtccag 1363 Query: 354 gagcaggacaatgtcaagcgtgtgcagct 382 |||||||| || ||||||||||||||||| Sbjct: 1364 gagcaggagaacgtcaagcgtgtgcagct 1392
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 153 bits (77), Expect = 7e-34 Identities = 140/161 (86%) Strand = Plus / Minus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 108848 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 108789 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 108788 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 108729 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccat 172 |||||||||||||||||| ||||||||| |||||||| Sbjct: 108728 gacatcgtcaagatcgtcgacagcttcccaggccaatccat 108688 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Minus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 108522 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 108463 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 108462 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 108403 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 108402 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 108343 Query: 426 caggatgcgatgaagactggttccttctacggttaga 462 || || |||||||||||||||||||||||||||| Sbjct: 108342 tccgacgccatgaagactggttccttctacggttaga 108306 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 45 atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 104 ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| ||| Sbjct: 112519 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 112460 Query: 105 ttcc 108 |||| Sbjct: 112459 ttcc 112456 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 180 ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| ||||| ||||| || || |||||||| ||||||||||||||||| Sbjct: 108588 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 108539 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 531 tgcccgtgccggaaggttgcaccgacc 557 |||| |||||||||||||||||||||| Sbjct: 107252 tgcctgtgccggaaggttgcaccgacc 107226 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 246 gagaacattggcaagaggctggtgaactc 274 |||||||| |||| ||||||||||||||| Sbjct: 112352 gagaacatcggcaggaggctggtgaactc 112324
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 153 bits (77), Expect = 7e-34 Identities = 140/161 (86%) Strand = Plus / Minus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 30725 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 30666 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 30665 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 30606 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccat 172 |||||||||||||||||| ||||||||| |||||||| Sbjct: 30605 gacatcgtcaagatcgtcgacagcttcccaggccaatccat 30565 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Minus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 30399 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 30340 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 30339 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 30280 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 30279 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 30220 Query: 426 caggatgcgatgaagactggttccttctacggttaga 462 || || |||||||||||||||||||||||||||| Sbjct: 30219 tccgacgccatgaagactggttccttctacggttaga 30183 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 45 atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 104 ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| ||| Sbjct: 34396 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 34337 Query: 105 ttcc 108 |||| Sbjct: 34336 ttcc 34333 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 180 ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| ||||| ||||| || || |||||||| ||||||||||||||||| Sbjct: 30465 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 30416 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 531 tgcccgtgccggaaggttgcaccgacc 557 |||| |||||||||||||||||||||| Sbjct: 29133 tgcctgtgccggaaggttgcaccgacc 29107 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 246 gagaacattggcaagaggctggtgaactc 274 |||||||| |||| ||||||||||||||| Sbjct: 34229 gagaacatcggcaggaggctggtgaactc 34201
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 153 bits (77), Expect = 7e-34 Identities = 140/161 (86%) Strand = Plus / Minus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 28303987 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 28303928 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 28303927 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 28303868 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccat 172 |||||||||||||||||| ||||||||| |||||||| Sbjct: 28303867 gacatcgtcaagatcgtcgacagcttcccaggccaatccat 28303827 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Minus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 28303661 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 28303602 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 28303601 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 28303542 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 28303541 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 28303482 Query: 426 caggatgcgatgaagactggttccttctacggttaga 462 || || |||||||||||||||||||||||||||| Sbjct: 28303481 tccgacgccatgaagactggttccttctacggttaga 28303445 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 45 atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 104 ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| ||| Sbjct: 28307658 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 28307599 Query: 105 ttcc 108 |||| Sbjct: 28307598 ttcc 28307595 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 180 ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| ||||| ||||| || || |||||||| ||||||||||||||||| Sbjct: 28303727 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 28303678 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 531 tgcccgtgccggaaggttgcaccgacc 557 |||| |||||||||||||||||||||| Sbjct: 28302395 tgcctgtgccggaaggttgcaccgacc 28302369 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 246 gagaacattggcaagaggctggtgaactc 274 |||||||| |||| ||||||||||||||| Sbjct: 28307491 gagaacatcggcaggaggctggtgaactc 28307463
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 153 bits (77), Expect = 7e-34 Identities = 140/161 (86%) Strand = Plus / Minus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||| Sbjct: 28286436 acgctgtacgcgccgctcatccgtgacgggcgtatggagaagttctactgggctcccacc 28286377 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || ||||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| Sbjct: 28286376 cgcgacgaccgtgtcggcgtctgcaagggtatcttccgcaccgacaacgtccccgacgag 28286317 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccat 172 |||||||||||||||||| ||||||||| |||||||| Sbjct: 28286316 gacatcgtcaagatcgtcgacagcttcccaggccaatccat 28286276 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Minus Query: 246 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 305 |||||||||||||||||||||||||||||| |||| || || | ||||||||||| Sbjct: 28286110 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 28286051 Query: 306 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 365 |||||||| |||| ||||| | |||||||| ||||||| || |||||||||| || Sbjct: 28286050 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 28285991 Query: 366 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 425 ||||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 28285990 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 28285931 Query: 426 caggatgcgatgaagactggttccttctacggttaga 462 || || |||||||||||||||||||||||||||| Sbjct: 28285930 tccgacgccatgaagactggttccttctacggttaga 28285894 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 45 atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 104 ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| ||| Sbjct: 28290107 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 28290048 Query: 105 ttcc 108 |||| Sbjct: 28290047 ttcc 28290044 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 180 ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 229 ||||| ||||| ||||| || || |||||||| ||||||||||||||||| Sbjct: 28286176 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 28286127 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 531 tgcccgtgccggaaggttgcaccgacc 557 |||| |||||||||||||||||||||| Sbjct: 28284844 tgcctgtgccggaaggttgcaccgacc 28284818 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 246 gagaacattggcaagaggctggtgaactc 274 |||||||| |||| ||||||||||||||| Sbjct: 28289940 gagaacatcggcaggaggctggtgaactc 28289912
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 1045 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 1104 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 1105 gaccgtatcggtgtctgcaagggtatcttc 1134
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 1045 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 1104 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 1105 gaccgtatcggtgtctgcaagggtatcttc 1134
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 1074 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 1133 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 1134 gaccgtatcggtgtctgcaagggtatcttc 1163
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 956 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 1015 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 1016 gaccgtatcggtgtctgcaagggtatcttc 1045
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 139 bits (70), Expect = 1e-29 Identities = 145/170 (85%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 995 tacgctccccttatccgtgatggtcgtatggagaagttctactgggctcccacccgtgag 1054 Query: 78 gaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtc 137 |||||||||||||| || ||||||||| |||||||||||| ||| || || Sbjct: 1055 gaccgtatcggtgttgccaccggtatcttcaggaccgacaatgttcctgaggaccacgtt 1114 Query: 138 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgc 187 |||||| |||||||||||||||| || ||||| ||||| || |||||||| Sbjct: 1115 gtcaagctcgtcgacaccttccctggccaatctattgatttcttcggtgc 1164
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 871 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 930 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 931 gaccgtatcggtgtctgcaagggtatcttc 960
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 14243 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 14184 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 14183 gaccgtatcggtgtctgcaagggtatcttc 14154
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 959 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 1018 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 1019 gaccgtatcggtgtctgcaagggtatcttc 1048
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 948 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 1007 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 1008 gaccgtatcggtgtctgcaagggtatcttc 1037
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 956 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 1015 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 1016 gaccgtatcggtgtctgcaagggtatcttc 1045
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 959 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 1018 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 1019 gaccgtatcggtgtctgcaagggtatcttc 1048
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 1074 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 1133 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 1134 gaccgtatcggtgtctgcaagggtatcttc 1163
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct: 3040 tacgctcctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaa 3099 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 |||||||||||||||||||||||||||||| Sbjct: 3100 gaccgtatcggtgtctgcaagggtatcttc 3129
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Plus Query: 15 ctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgt 74 |||||||| || || |||||||| ||||||||||||||||||||||||||||||||| | Sbjct: 862 ctctacgcccccctcatccgtgacggtcgtatggagaagttctactgggctcccaccagg 921 Query: 75 gacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtct 134 || ||||| |||| ||||||| ||||||||| | ||||||| ||| | ||| | Sbjct: 922 gatgaccgggtcggcgtctgcaccggtatcttcaggtccgacaacgtccccaaggaggat 981 Query: 135 gtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgt 194 ||| ||||| |||||||||||||||| || |||||||||||||| |||||||| ||| | Sbjct: 982 gtcatcaagctcgtcgacaccttccccggccaatccattgacttcttcggtgcactgagg 1041 Query: 195 gctcgggtgtacgacgatgaggtgcgcaagtgg 227 || |||| |||||||| |||||| | |||||| Sbjct: 1042 gcgagggtctacgacgacgaggtgaggaagtgg 1074 Score = 103 bits (52), Expect = 6e-19 Identities = 166/204 (81%) Strand = Plus / Plus Query: 258 aagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtc 317 ||||||||||||||||||| ||| ||||| ||| |||| |||||| |||||||| | Sbjct: 1105 aagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctg 1164 Query: 318 gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 377 || |||||||| |||||||| | ||||| || ||||| ||||| || || ||| | ||| Sbjct: 1165 gacaagctgctggagtacggcaatatgctggtgcaggaacaggagaacgtgaagagggtg 1224 Query: 378 cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 437 ||||| || |||| ||| ||||| |||||||||| ||||| || || ||||| ||||| Sbjct: 1225 cagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatc 1284 Query: 438 aagactggttccttctacggttag 461 |||||||| |||||||| |||||| Sbjct: 1285 aagactggatccttctatggttag 1308
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Plus Query: 15 ctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgt 74 |||||||| || || |||||||| ||||||||||||||||||||||||||||||||| | Sbjct: 725 ctctacgcccccctcatccgtgacggtcgtatggagaagttctactgggctcccaccagg 784 Query: 75 gacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtct 134 || ||||| |||| ||||||| ||||||||| | ||||||| ||| | ||| | Sbjct: 785 gatgaccgggtcggcgtctgcaccggtatcttcaggtccgacaacgtccccaaggaggat 844 Query: 135 gtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgt 194 ||| ||||| |||||||||||||||| || |||||||||||||| |||||||| ||| | Sbjct: 845 gtcatcaagctcgtcgacaccttccccggccaatccattgacttcttcggtgcactgagg 904 Query: 195 gctcgggtgtacgacgatgaggtgcgcaagtgg 227 || |||| |||||||| |||||| | |||||| Sbjct: 905 gcgagggtctacgacgacgaggtgaggaagtgg 937 Score = 97.6 bits (49), Expect = 4e-17 Identities = 160/197 (81%) Strand = Plus / Plus Query: 258 aagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtc 317 ||||||||||||||||||| ||| ||||| ||| |||| |||||| |||||||| | Sbjct: 968 aagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctg 1027 Query: 318 gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 377 || |||||||| |||||||| | ||||| || ||||| ||||| || || ||| | ||| Sbjct: 1028 gacaagctgctggagtacggcaatatgctggtgcaggaacaggagaacgtgaagagggtg 1087 Query: 378 cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 437 ||||| || |||| ||| ||||| |||||||||| ||||| || || ||||| ||||| Sbjct: 1088 cagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatc 1147 Query: 438 aagactggttccttcta 454 |||||||| |||||||| Sbjct: 1148 aagactggatccttcta 1164
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Plus Query: 15 ctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgt 74 |||||||| || || |||||||| ||||||||||||||||||||||||||||||||| | Sbjct: 561 ctctacgcccccctcatccgtgacggtcgtatggagaagttctactgggctcccaccagg 620 Query: 75 gacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtct 134 || ||||| |||| ||||||| ||||||||| | ||||||| ||| | ||| | Sbjct: 621 gatgaccgggtcggcgtctgcaccggtatcttcaggtccgacaacgtccccaaggaggat 680 Query: 135 gtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgt 194 ||| ||||| |||||||||||||||| || |||||||||||||| |||||||| ||| | Sbjct: 681 gtcatcaagctcgtcgacaccttccccggccaatccattgacttcttcggtgcactgagg 740 Query: 195 gctcgggtgtacgacgatgaggtgcgcaagtgg 227 || |||| |||||||| |||||| | |||||| Sbjct: 741 gcgagggtctacgacgacgaggtgaggaagtgg 773 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Plus Query: 255 ggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgaca 314 |||||||||||||||||||||| ||| ||||| ||| |||| |||||| |||||||| Sbjct: 801 ggcaagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgacc 860 Query: 315 gtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgt 374 | || |||||||| |||||||| ||||||| || ||||||||||| || || ||| | Sbjct: 861 ctggacaagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagg 920 Query: 375 gtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcg 434 |||||||| || |||| ||| ||||| |||||||||| ||||| || || ||||| ||| Sbjct: 921 gtgcagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcg 980 Query: 435 atgaagactggttccttctacggttag 461 || |||||||| |||||||| |||||| Sbjct: 981 atcaagactggatccttctatggttag 1007
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Plus Query: 15 ctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgt 74 |||||||| || || |||||||| ||||||||||||||||||||||||||||||||| | Sbjct: 755 ctctacgcccccctcatccgtgacggtcgtatggagaagttctactgggctcccaccagg 814 Query: 75 gacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtct 134 || ||||| |||| ||||||| ||||||||| | ||||||| ||| | ||| | Sbjct: 815 gatgaccgggtcggcgtctgcaccggtatcttcaggtccgacaacgtccccaaggaggat 874 Query: 135 gtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgt 194 ||| ||||| |||||||||||||||| || |||||||||||||| |||||||| ||| | Sbjct: 875 gtcatcaagctcgtcgacaccttccccggccaatccattgacttcttcggtgcactgagg 934 Query: 195 gctcgggtgtacgacgatgaggtgcgcaagtgg 227 || |||| |||||||| |||||| | |||||| Sbjct: 935 gcgagggtctacgacgacgaggtgaggaagtgg 967 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Plus Query: 255 ggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgaca 314 |||||||||||||||||||||| ||| ||||| ||| |||| |||||| |||||||| Sbjct: 995 ggcaagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgacc 1054 Query: 315 gtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgt 374 | || |||||||| |||||||| ||||||| || ||||||||||| || || ||| | Sbjct: 1055 ctggacaagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagg 1114 Query: 375 gtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcg 434 |||||||| || |||| ||| ||||| |||||||||| ||||| || || ||||| ||| Sbjct: 1115 gtgcagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcg 1174 Query: 435 atgaagactggttccttcta 454 || |||||||| |||||||| Sbjct: 1175 atcaagactggatccttcta 1194
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2737 tacgctccccttatccgtgatggtcgtatggagaagttctactgggctcccacccgtgag 2796 Query: 78 gaccgtatcggtgtctg 94 |||||||| |||||||| Sbjct: 2797 gaccgtattggtgtctg 2813
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1109 tacgctccccttatccgtgatggtcgtatggagaagttctactgggctcccacccgtgag 1168 Query: 78 gaccgtatcggtgtctg 94 |||||||| |||||||| Sbjct: 1169 gaccgtattggtgtctg 1185 Score = 44.1 bits (22), Expect = 0.50 Identities = 58/70 (82%) Strand = Plus / Plus Query: 145 tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 204 |||| ||| ||||||| |||||||| || ||||||||||| || || | ||||| || | Sbjct: 1236 tcgttgacgccttccctggacaatctatcgactttttcggagcgttgagggctcgtgtat 1295 Query: 205 acgacgatga 214 |||||||||| Sbjct: 1296 acgacgatga 1305
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 111 bits (56), Expect = 3e-21 Identities = 92/104 (88%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| |||||||||||||||||||| || |||||||||||||| ||| | || Sbjct: 940 tacgctcctcttatccgtgatggtcgtatggaaaaattctactgggctcctaccagggaa 999 Query: 78 gaccgtatcggtgtctgcaagggtatcttccagaccgacaatgt 121 |||||||| ||||||||||||||||| ||| ||| |||||||| Sbjct: 1000 gaccgtattggtgtctgcaagggtattttcaggactgacaatgt 1043 Score = 44.1 bits (22), Expect = 0.50 Identities = 43/50 (86%) Strand = Plus / Plus Query: 384 gctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgc 433 ||||||| |||||||| |||| || || |||||||||||||||||||| Sbjct: 1306 gctgacaagtacatgagtgaggctgcccttggtgatgctaaccaggatgc 1355
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 107 bits (54), Expect = 4e-20 Identities = 168/206 (81%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||||||||| || || ||||| || || || |||||||||||||||||||| |||||| Sbjct: 478 acgctctacgcgccgctcatccgcgacggccgcatggagaagttctactgggcgcccacc 537 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || || ||||| ||||| ||||||||||| ||||||| |||||| ||| || ||| Sbjct: 538 cgcgaggaccgcatcggcgtctgcaagggcatcttccgcaccgacggcgtcgacgaggag 597 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||| || | |||||||||||||| || || ||||| ||||| ||||| || ||| Sbjct: 598 cacgtcgtccagctggtcgacaccttccctggccagtccatcgacttcttcggcgcgctg 657 Query: 192 cgtgctcgggtgtacgacgatgaggt 217 ||||| ||||| |||||||| ||||| Sbjct: 658 cgtgcccgggtctacgacgacgaggt 683 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Plus Query: 294 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 353 ||||||||||| ||||| || |||||||||| | |||||||| |||||||| || | Sbjct: 760 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 819 Query: 354 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 413 |||||||| || ||||||||||||||||||||||||| ||| | | | |||| ||||| Sbjct: 820 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 879 Query: 414 ggtgatgctaaccaggatgcgatgaagactggttccttct 453 ||||| || ||| |||| || ||||||||||| ||||||| Sbjct: 880 ggtgaagccaacgaggacgccatgaagactggctccttct 919
>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase activase (Rca) gene, partial sequence Length = 648 Score = 107 bits (54), Expect = 4e-20 Identities = 90/102 (88%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgac 80 |||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||| Sbjct: 147 gctcctctcatccgtgatggtcgtatggagaaattctactgggcacccactcgtgaggac 206 Query: 81 cgtatcggtgtctgcaagggtatcttccagaccgacaatgtc 122 ||||| ||||| |||| ||||||||| ||| ||||||||| Sbjct: 207 cgtattggtgtttgcactggtatcttcaggactgacaatgtc 248
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 101 bits (51), Expect = 2e-18 Identities = 72/79 (91%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 956 tacgctcctctcatccgtgacggtcgtatggagaagttctactgggctcccacccgcgaa 1015 Query: 78 gaccgtatcggtgtctgca 96 || ||||| || ||||||| Sbjct: 1016 gatcgtattggagtctgca 1034 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Plus Query: 294 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 353 ||||||||||| |||||||| |||| ||||| || |||||||| ||||||| ||||| Sbjct: 1232 ttcgagcagccgaagatgactatcgaaaagctcctcgagtacggaaacatgcttgtccaa 1291 Query: 354 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 413 ||||| || ||||| ||| | || || | ||||| | ||| ||||| |||| ||||| Sbjct: 1292 gagcaagagaatgtgaagagagttcaattggctgataagtacttgagcgaggctgctctt 1351 Query: 414 ggtgatgctaac 425 |||||||||||| Sbjct: 1352 ggtgatgctaac 1363 Score = 44.1 bits (22), Expect = 0.50 Identities = 64/78 (82%) Strand = Plus / Plus Query: 150 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 209 |||||||||||||| ||||| ||||| || || ||||| || | ||| |||| |||||| Sbjct: 1088 gacaccttcccaggccaatctattgatttctttggtgccttgagggctagggtttacgac 1147 Query: 210 gatgaggtgcgcaagtgg 227 ||||| ||| | |||||| Sbjct: 1148 gatgaagtgaggaagtgg 1165
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 99.6 bits (50), Expect = 1e-17 Identities = 167/206 (81%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||||||||| || || ||||| || || || |||||||||||||||||||| |||||| Sbjct: 873 acgctctacgcgccgctcatccgcgacggccgcatggagaagttctactgggcgcccacc 932 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || || ||||| ||||| ||||||||||| ||||||| |||||| ||| || ||| Sbjct: 933 cgcgaggaccgcatcggcgtctgcaagggcatcttccgcaccgacggcgtcgacgaggag 992 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||| || | |||||||||||||| || || ||||| || || ||||| || ||| Sbjct: 993 cacgtcgtccagctggtcgacaccttccctggccagtccatcgatttcttcggcgcgctg 1052 Query: 192 cgtgctcgggtgtacgacgatgaggt 217 ||||| ||||| |||||||| ||||| Sbjct: 1053 cgtgcccgggtctacgacgacgaggt 1078 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Plus Query: 294 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 353 ||||||||||| ||||| || |||||||||| | |||||||| |||||||| || | Sbjct: 1155 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 1214 Query: 354 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 413 |||||||| || ||||||||||||||||||||||||| ||| | | | |||| ||||| Sbjct: 1215 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 1274 Query: 414 ggtgatgctaaccaggatgcgatgaagactggttccttct 453 ||||| || ||| |||| || ||||||||||| ||||||| Sbjct: 1275 ggtgaagccaacgaggacgccatgaagactggctccttct 1314
>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase (pTA1.1) Length = 1011 Score = 99.6 bits (50), Expect = 1e-17 Identities = 161/198 (81%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgac 80 |||||||| ||||||||||||||||||||||||||||| ||||| || || | || || Sbjct: 265 gctcctcttatccgtgatggtcgtatggagaagttctattgggcaccaactagggaagat 324 Query: 81 cgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtc 140 | || ||||| ||||||||||| ||| ||||||||| || ||| || |||| || Sbjct: 325 agaattggtgtttgcaagggtattttcaggaccgacaacgtgcctgaggaagctgttgta 384 Query: 141 aagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgg 200 ||||| ||||| |||||||| |||||||| |||||||| || ||||||||| | || || Sbjct: 385 aagattgtcgataccttccctggacaatctattgacttctttggtgctctgagggcacga 444 Query: 201 gtgtacgacgatgaggtg 218 || ||||| ||||||||| Sbjct: 445 gtatacgatgatgaggtg 462
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Plus Query: 294 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 353 ||||||||||| ||||| || |||||||||| | |||||||| |||||||| || | Sbjct: 1155 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 1214 Query: 354 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 413 |||||||| || ||||||||||||||||||||||||| ||| | | | |||| ||||| Sbjct: 1215 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 1274 Query: 414 ggtgatgctaaccaggatgcgatgaagactggttccttct 453 ||||| || ||| |||| || ||||||||||| ||||||| Sbjct: 1275 ggtgaagccaacgaggacgccatgaagactggctccttct 1314 Score = 89.7 bits (45), Expect = 9e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||||||||| || || ||||| || || || |||||||||||||||||||| |||||| Sbjct: 873 acgctctacgcgccgctcatccgcgacggccgcatggagaagttctactgggcgcccacc 932 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || || ||||| ||||| ||||||||||| ||||||| Sbjct: 933 cgcgaggaccgcatcggcgtctgcaagggcatcttcc 969
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| || |||||||||||||||||||| ||||||||||| |||||| | || Sbjct: 783 tacgctcctctcattcgtgatggtcgtatggagaaattctactgggcgcccaccagagaa 842 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 ||||| || |||||||||| ||||||||| Sbjct: 843 gaccgaattggtgtctgcactggtatcttc 872
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgac 77 ||||||||||| || |||||||||||||||||||| ||||||||||| |||||| | || Sbjct: 956 tacgctcctctcattcgtgatggtcgtatggagaaattctactgggcgcccaccagagaa 1015 Query: 78 gaccgtatcggtgtctgcaagggtatcttc 107 ||||| || |||||||||| ||||||||| Sbjct: 1016 gaccgaattggtgtctgcactggtatcttc 1045
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgac 80 |||||||| |||||||||||||||||||||||||||||||||||||| || | || || Sbjct: 381 gctcctctcatccgtgatggtcgtatggagaagttctactgggctcctactagagaagat 440 Query: 81 cgtatcggtgtctgca 96 ||||| |||||||||| Sbjct: 441 cgtattggtgtctgca 456 Score = 48.1 bits (24), Expect = 0.032 Identities = 75/92 (81%) Strand = Plus / Plus Query: 138 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgct 197 |||||||| || ||||||||||| || |||||||| || || |||||||| || | ||| Sbjct: 498 gtcaagattgttgacaccttccctggccaatccatcgatttcttcggtgcattgagggct 557 Query: 198 cgggtgtacgacgatgaggtgcgcaagtgggt 229 | |||||||| ||||| ||| | |||||||| Sbjct: 558 agagtgtacgatgatgaagtgaggaagtgggt 589
>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence Length = 253 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgac 80 ||||| || ||||||||||||||||||||||| ||||||||||| || ||||| ||||| Sbjct: 68 gctccccttatccgtgatggtcgtatggagaaattctactgggcaccaacccgcgacgat 127 Query: 81 cgtatcggtgtctgca 96 ||||| |||||||||| Sbjct: 128 cgtattggtgtctgca 143
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 85.7 bits (43), Expect = 1e-13 Identities = 136/167 (81%) Strand = Plus / Plus Query: 45 atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 104 ||||| |||||||||||||| |||||||| |||||||| ||||| || |||||||| ||| Sbjct: 452 atggacaagttctactgggcgcccacccgcgacgaccgcatcggcgtgtgcaagggcatc 511 Query: 105 ttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccagga 164 |||| |||||| ||| |||||| |||||| || |||||||| ||||||| || Sbjct: 512 ttccgcaccgacggcgtccccgacgagcacgtcgtccagctcgtcgacgccttcccgggc 571 Query: 165 caatccattgactttttcggtgctctgcgtgctcgggtgtacgacga 211 || ||||| ||||| ||||| || || || || |||||||||||||| Sbjct: 572 cagtccatcgacttcttcggcgccctccgcgcccgggtgtacgacga 618
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgac 80 |||||||| ||||||||||||||||||||||||||||||||||| || || | || ||| Sbjct: 948 gctcctctcatccgtgatggtcgtatggagaagttctactgggcaccaacaagggaagac 1007 Query: 81 cgtatcggtgtctgcaagggtatcttccagaccga 115 || || ||||| |||||||| || |||| |||||| Sbjct: 1008 cgcattggtgtttgcaagggaattttccggaccga 1042
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 24 cctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgt 83 ||||| ||||||||||| ||||||||||| ||||||||||| |||||| | || |||||| Sbjct: 946 cctcttatccgtgatggccgtatggagaaattctactgggcacccaccagggaggaccgt 1005 Query: 84 atcggtgtctgcaa 97 || ||||||||||| Sbjct: 1006 attggtgtctgcaa 1019 Score = 40.1 bits (20), Expect = 7.8 Identities = 68/84 (80%) Strand = Plus / Plus Query: 341 catgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgag 400 |||||| |||||||||||||| || |||||| | || || | ||||||| |||||| Sbjct: 1263 catgcttgtccaggagcaggagaacgtcaagagagttcaattagctgacaaatacatgtc 1322 Query: 401 ccaggcagctctgggtgatgctaa 424 | |||| ||||| ||||||||||| Sbjct: 1323 cgaggctgctcttggtgatgctaa 1346
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 83.8 bits (42), Expect = 6e-13 Identities = 159/198 (80%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgac 80 |||||||| ||||||||||||||||||||||||||||| ||||| || || | || || Sbjct: 909 gctcctcttatccgtgatggtcgtatggagaagttctattgggcaccaactagggaagat 968 Query: 81 cgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtc 140 | || ||||| ||||||||||| ||| ||||||||| || ||| || | || | Sbjct: 969 agaattggtgtttgcaagggtattttcaggaccgacaacgtgcctgaggaagccgttata 1028 Query: 141 aagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgg 200 ||||| ||||| |||||||| |||||||| |||||||| || ||||||||| | || || Sbjct: 1029 aagattgtcgataccttccctggacaatctattgacttctttggtgctctgagggcacga 1088 Query: 201 gtgtacgacgatgaggtg 218 || ||||| ||||||||| Sbjct: 1089 gtatacgatgatgaggtg 1106
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || || ||||| |||||||||||||| |||||| Sbjct: 433 acgctgtacgcgccgctcatccgtgacgggcgcatggacaagttctactgggcgcccacc 492 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 493 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 529
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || || ||||| |||||||||||||| |||||| Sbjct: 435 acgctgtacgcgccgctcatccgtgacgggcgcatggacaagttctactgggcgcccacc 494 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 495 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 531
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || || ||||| |||||||||||||| |||||| Sbjct: 439 acgctgtacgcgccgctcatccgtgacgggcgcatggacaagttctactgggcgcccacc 498 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 499 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 535
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || || ||||| |||||||||||||| |||||| Sbjct: 435 acgctgtacgcgccgctcatccgtgacgggcgcatggacaagttctactgggcgcccacc 494 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 495 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 531
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || || ||||| |||||||||||||| |||||| Sbjct: 435 acgctgtacgcgccgctcatccgtgacgggcgcatggacaagttctactgggcgcccacc 494 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 495 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 531
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || || ||||| |||||||||||||| |||||| Sbjct: 435 acgctgtacgcgccgctcatccgtgacgggcgcatggacaagttctactgggcgcccacc 494 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 495 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 531
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || || ||||| |||||||||||||| |||||| Sbjct: 435 acgctgtacgcgccgctcatccgtgacgggcgcatggacaagttctactgggcgcccacc 494 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 495 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 531
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || |||||||| || || ||||| |||||||||||||| |||||| Sbjct: 437 acgctgtacgcgccgctcatccgtgacgggcgcatggacaagttctactgggcgcccacc 496 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 497 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 533
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 79.8 bits (40), Expect = 9e-12 Identities = 160/200 (80%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || ||||| || || || ||||| |||||||||||||| |||||| Sbjct: 427 acgctgtacgcgccgctcatccgcgacgggcgcatggacaagttctactgggcgcccacc 486 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgag 131 || || ||||| ||||| || |||||||| ||||||| |||||| ||| |||||| Sbjct: 487 cgggaggaccgcatcggcgtgtgcaagggcatcttccgcaccgacggcgtccccgacgag 546 Query: 132 tctgtcgtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||| || |||||||| ||||||| || || ||||| ||||| ||||| || || Sbjct: 547 cacgtcgtccagctcgtcgacgccttcccgggccagtccatcgacttcttcggcgccctc 606 Query: 192 cgtgctcgggtgtacgacga 211 || || |||||||||||||| Sbjct: 607 cgcgcccgggtgtacgacga 626
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 79.8 bits (40), Expect = 9e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgac 80 |||||||| |||||||| |||||||||||||| || |||||||| || || | |||||| Sbjct: 758 gctcctctcatccgtgacggtcgtatggagaaattttactgggcaccaactagggacgac 817 Query: 81 cgtatcggtgtctgcaagggtatcttccagaccgac 116 ||||||||||| ||||| ||||| ||| ||||||| Sbjct: 818 cgtatcggtgtttgcaaaggtattttcaggaccgac 853 Score = 48.1 bits (24), Expect = 0.032 Identities = 54/64 (84%) Strand = Plus / Plus Query: 145 tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 204 |||||||||||||||| || |||||||| || || |||||||| || | |||||||| | Sbjct: 882 tcgtcgacaccttccccggccaatccatcgatttcttcggtgccttgagggctcgggttt 941 Query: 205 acga 208 |||| Sbjct: 942 acga 945
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Plus Query: 321 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 380 |||||||||||||| || ||||||| |||||||||||||||||||| ||| | || || Sbjct: 3 aagctgctagagtatggaaacatgcttgtccaggagcaggacaatgtgaagagagttcaa 62 Query: 381 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgat 436 || || ||||| ||| ||||||| |||||||| || ||||| ||| ||||| |||| Sbjct: 63 ctggcagacacgtacttgagccaagcagctcttggagatgcaaacgaggattcgat 118
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 79.8 bits (40), Expect = 9e-12 Identities = 43/44 (97%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggc 64 |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 920 gctcctcttatccgtgatggtcgtatggagaagttctactgggc 963
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || ||||| || || || ||||| |||||||||||||| |||||| Sbjct: 437 acgctgtacgcgccgctcatccgcgacgggcgcatggacaagttctactgggcgcccacc 496 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 497 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 533
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || ||||| || || || ||||| |||||||||||||| |||||| Sbjct: 435 acgctgtacgcgccgctcatccgcgacgggcgcatggacaagttctactgggcgcccacc 494 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 495 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 531
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || ||||| || || || ||||| |||||||||||||| |||||| Sbjct: 433 acgctgtacgcgccgctcatccgcgacgggcgcatggacaagttctactgggcgcccacc 492 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 493 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 529
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || ||||| || || || ||||| |||||||||||||| |||||| Sbjct: 433 acgctgtacgcgccgctcatccgcgacgggcgcatggacaagttctactgggcgcccacc 492 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 493 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 529
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || ||||| || || || ||||| |||||||||||||| |||||| Sbjct: 435 acgctgtacgcgccgctcatccgcgacgggcgcatggacaagttctactgggcgcccacc 494 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 495 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 531
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 73.8 bits (37), Expect = 6e-10 Identities = 82/97 (84%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 71 ||||| ||||| || || ||||| || || || ||||| |||||||||||||| |||||| Sbjct: 439 acgctgtacgcgccgctcatccgcgacgggcgcatggacaagttctactgggcgcccacc 498 Query: 72 cgtgacgaccgtatcggtgtctgcaagggtatcttcc 108 || |||||||| ||||| || |||||||| ||||||| Sbjct: 499 cgcgacgaccgcatcggcgtgtgcaagggcatcttcc 535
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgac 80 |||||||| |||||||| |||||||||||||| || |||||||| || || | |||||| Sbjct: 757 gctcctctcatccgtgacggtcgtatggagaaattttactgggcaccaactagggacgac 816 Query: 81 cgtatcggtgtctgcaagggtatcttccagaccgac 116 ||| ||||||| ||||| ||||| ||| ||||||| Sbjct: 817 cgtgtcggtgtttgcaaaggtattttcaggaccgac 852 Score = 48.1 bits (24), Expect = 0.032 Identities = 54/64 (84%) Strand = Plus / Plus Query: 145 tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 204 |||||||||||||||| || |||||||| || || |||||||| || | |||||||| | Sbjct: 881 tcgtcgacaccttccccggccaatccatcgatttcttcggtgccttgagggctcgggttt 940 Query: 205 acga 208 |||| Sbjct: 941 acga 944
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggc 64 ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 179 gctccacttatccgtgatggtcgtatggagaagttctactgggc 222 Score = 44.1 bits (22), Expect = 0.50 Identities = 43/50 (86%) Strand = Plus / Plus Query: 138 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgc 187 |||||||| || || | |||||| |||||||| || |||||||||||||| Sbjct: 296 gtcaagattgttgataacttccctggacaatctatcgactttttcggtgc 345
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 71.9 bits (36), Expect = 2e-09 Identities = 93/112 (83%) Strand = Plus / Plus Query: 10 cgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctccca 69 ||||||| ||||| || || |||||||| ||||||||||||||||| |||||||| |||| Sbjct: 932 cgacgctgtacgcgccgctcatccgtgacggtcgtatggagaagttttactgggcaccca 991 Query: 70 cccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaatgt 121 || | || || | |||||||| |||| ||||| ||| |||||||||||| Sbjct: 992 ccagggaagataggatcggtgtttgcacaggtattttcaggaccgacaatgt 1043 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 150 gacaccttcccaggacaatccattgactttttcggtgctctg 191 ||||||||||| || ||||||||||||||||||||||||||| Sbjct: 1072 gacaccttcccgggccaatccattgactttttcggtgctctg 1113
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggc 64 ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 939 gctccacttatccgtgatggtcgtatggagaagttctactgggc 982
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 24 cctctgatccgtgatggtcgtatggagaagttctactgggc 64 ||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 959 cctcttatccgtgatggtcgtatggagaaattctactgggc 999 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 138 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 191 |||||||||||||| | |||||| |||||||| ||||| || |||||||||||| Sbjct: 1073 gtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctg 1126
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 12 acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggc 64 ||||| || |||||||| || |||||||| ||||||||||||||||||||||| Sbjct: 943 acgctgtatgctcctctcattcgtgatgggcgtatggagaagttctactgggc 995
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 30 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 89 |||||||| || || |||||||||| ||||||| ||||||||||| ||||| ||||| Sbjct: 1781 atccgtgacggccgcatggagaagtactactggaaccccacccgtgaggaccgcatcggc 1840 Query: 90 gtctgcaagggtatcttccag 110 ||||||| ||| ||||||||| Sbjct: 1841 gtctgcatgggaatcttccag 1861 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 354 gagcaggacaatgtcaagcgtgtgcagct 382 |||||||| ||||||||||| |||||||| Sbjct: 2105 gagcaggagaatgtcaagcgcgtgcagct 2133
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggctcc 67 ||||| || ||||| |||||||||||||| ||||||||||||||||| Sbjct: 373 gctccccttatccgcgatggtcgtatggaaaagttctactgggctcc 419
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 150 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 209 ||||||||||| || || ||||||||||| ||||| || |||||||| || ||||||||| Sbjct: 2662 gacaccttccccggccagtccattgacttcttcggcgccctgcgtgcccgcgtgtacgac 2721 Query: 210 ga 211 || Sbjct: 2722 ga 2723
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 150 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 209 ||||||||||| || || ||||||||||| ||||| || |||||||| || ||||||||| Sbjct: 972 gacaccttccccggccagtccattgacttcttcggcgccctgcgtgcccgcgtgtacgac 1031 Query: 210 ga 211 || Sbjct: 1032 ga 1033
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/79 (86%), Gaps = 4/79 (5%) Strand = Plus / Plus Query: 18 tacgctcctctgatccgtgatggtcgtatggagaagttct--actgggctcccacccgtg 75 |||| |||||| |||| |||||| |||||||||||||||| ||||| || ||||||| Sbjct: 940 tacggtcctctcatccttgatggacgtatggagaagttcttgactgg--cccgacccgtg 997 Query: 76 acgaccgtatcggtgtctg 94 | ||||||||||||||||| Sbjct: 998 aagaccgtatcggtgtctg 1016
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 28 tgatccgtgatggtcgtatggagaagttctactgg 62 |||| |||||||| ||||||||||||||||||||| Sbjct: 644 tgattcgtgatgggcgtatggagaagttctactgg 678
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Plus Query: 147 gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 206 |||||||||||||||||||| || || ||||| || |||||| || | ||||| || || Sbjct: 1080 gtcgacaccttcccaggacagtcaatagacttctttggtgctttgagagctcgagtttat 1139 Query: 207 gacgatgaggtgcgcaagtggg 228 |||||||| ||| | ||||||| Sbjct: 1140 gacgatgaagtgagaaagtggg 1161 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 24 cctctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgt 83 ||||| || ||||||||||| ||||| || |||||||||||||| || ||||| || ||| Sbjct: 957 cctctcattcgtgatggtcggatggataaattctactgggctccaactcgtgaagatcgt 1016 Query: 84 at 85 || Sbjct: 1017 at 1018
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Minus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggc 64 |||||||| || ||||| |||||||||||||| ||||| ||||| Sbjct: 103868 gctcctcttattcgtgacggtcgtatggagaaattctattgggc 103825
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 48.1 bits (24), Expect = 0.032 Identities = 39/44 (88%) Strand = Plus / Minus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgggc 64 |||||||| || ||||| |||||||||||||| ||||| ||||| Sbjct: 82893 gctcctcttattcgtgacggtcgtatggagaaattctattgggc 82850
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 33 cgtgatggtcgtatggagaagttctactgggctcccacccgtgacga 79 |||||||| |||||||| || ||||||||||| || || |||||||| Sbjct: 6938 cgtgatggacgtatggaaaaattctactgggcacctactcgtgacga 6892
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 531 tgcccgtgccggaaggttgcaccgacc 557 |||| |||||||||||||||||||||| Sbjct: 5 tgcctgtgccggaaggttgcaccgacc 31
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 531 tgcccgtgccggaaggttgcaccgacc 557 |||| |||||||||||||||||||||| Sbjct: 4541319 tgcctgtgccggaaggttgcaccgacc 4541345
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 531 tgcccgtgccggaaggttgcaccgacc 557 |||| |||||||||||||||||||||| Sbjct: 84693 tgcctgtgccggaaggttgcaccgacc 84719
>ref|NM_105969.1| Arabidopsis thaliana ATP binding / ATPase AT1G73110 mRNA, complete cds Length = 1437 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgg 62 ||||| ||||||||||| || | |||||||||||||||||| Sbjct: 929 gctccactgatccgtgaaggaagaatggagaagttctactgg 970
>gb|AY078044.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds Length = 1299 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgg 62 ||||| ||||||||||| || | |||||||||||||||||| Sbjct: 895 gctccactgatccgtgaaggaagaatggagaagttctactgg 936
>gb|AF361834.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds Length = 1437 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgg 62 ||||| ||||||||||| || | |||||||||||||||||| Sbjct: 929 gctccactgatccgtgaaggaagaatggagaagttctactgg 970
>emb|BX813694.1|CNS0ADV2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB33ZF10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1426 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgg 62 ||||| ||||||||||| || | |||||||||||||||||| Sbjct: 957 gctccactgatccgtgaaggaagaatggagaagttctactgg 998
>emb|BX815704.1|CNS0AARM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS85ZG11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1496 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgg 62 ||||| ||||||||||| || | |||||||||||||||||| Sbjct: 903 gctccactgatccgtgaaggaagaatggagaagttctactgg 944
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 399 agccaggcagctctgggtgatg 420 |||||||||||||||||||||| Sbjct: 51254 agccaggcagctctgggtgatg 51275
>dbj|AK118942.1| Arabidopsis thaliana At1g73110 mRNA for unknown protein, complete cds, clone: RAFL21-28-D21 Length = 1447 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgg 62 ||||| ||||||||||| || | |||||||||||||||||| Sbjct: 916 gctccactgatccgtgaaggaagaatggagaagttctactgg 957
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Minus Query: 21 gctcctctgatccgtgatggtcgtatggagaagttctactgg 62 ||||| ||||||||||| || | |||||||||||||||||| Sbjct: 97656 gctccactgatccgtgaaggaagaatggagaagttctactgg 97615
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 caagatcgtcgacaccttccc 160 ||||||||||||||||||||| Sbjct: 3673 caagatcgtcgacaccttccc 3653
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 478 acccaccatctcttgctgcat 498 ||||||||||||||||||||| Sbjct: 63550 acccaccatctcttgctgcat 63530
>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence Length = 98713 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 ggtgtctgcaagggtatcttccag 110 |||||||||||||||||| ||||| Sbjct: 67265 ggtgtctgcaagggtatcatccag 67288
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 tgcataggaggaggtaaagg 513 |||||||||||||||||||| Sbjct: 46378 tgcataggaggaggtaaagg 46359
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 tgagccaggcagctctgggtgatg 420 ||||||||||||||||||| |||| Sbjct: 1565 tgagccaggcagctctgggcgatg 1542
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 tgcataggaggaggtaaagg 513 |||||||||||||||||||| Sbjct: 1656 tgcataggaggaggtaaagg 1637
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 tgcataggaggaggtaaagg 513 |||||||||||||||||||| Sbjct: 32964 tgcataggaggaggtaaagg 32945
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 agcgtgtgcagcttgctgac 389 |||||||||||||||||||| Sbjct: 223 agcgtgtgcagcttgctgac 242
>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B Length = 1010 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 agtgacgagtctgtcgtcaa 142 |||||||||||||||||||| Sbjct: 308 agtgacgagtctgtcgtcaa 289
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 tgagccaggcagctctgggtgatg 420 ||||||||||||||||||| |||| Sbjct: 1619 tgagccaggcagctctgggcgatg 1596
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 caggagcaggacaatgtcaa 370 |||||||||||||||||||| Sbjct: 126419 caggagcaggacaatgtcaa 126438
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 tgagccaggcagctctgggtgatg 420 ||||||||||||||||||| |||| Sbjct: 1935 tgagccaggcagctctgggcgatg 1912
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 tgcataggaggaggtaaagg 513 |||||||||||||||||||| Sbjct: 34681 tgcataggaggaggtaaagg 34662
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 tgagccaggcagctctgggtgatg 420 ||||||||||||||||||| |||| Sbjct: 1659 tgagccaggcagctctgggcgatg 1636
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 tgagccaggcagctctgggtgatg 420 ||||||||||||||||||| |||| Sbjct: 2026 tgagccaggcagctctgggcgatg 2003
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 tgagccaggcagctctgggtgatg 420 ||||||||||||||||||| |||| Sbjct: 1935 tgagccaggcagctctgggcgatg 1912
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 cgtgacgaccgtatcggtgt 91 |||||||||||||||||||| Sbjct: 3056327 cgtgacgaccgtatcggtgt 3056308
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 caggagcaggacaatgtcaa 370 |||||||||||||||||||| Sbjct: 106979 caggagcaggacaatgtcaa 106960
>emb|BX818441.1|CNS0ACQX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL79ZC02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 593 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 27 ctgatccgtgatggtcgtatggagaagttctactgg 62 ||||||||||| || | |||||||||||||||||| Sbjct: 173 ctgatccgtgaaggaagaatggagaagttctactgg 208
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 tgagccaggcagctctgggtgatg 420 ||||||||||||||||||| |||| Sbjct: 1619 tgagccaggcagctctgggcgatg 1596
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 501 gaggaggtaaaggagcacagcaag 524 |||||||||||||||| ||||||| Sbjct: 625 gaggaggtaaaggagcccagcaag 648
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tgcataggaggaggtaaagg 513 |||||||||||||||||||| Sbjct: 27736 tgcataggaggaggtaaagg 27755 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,428,812 Number of Sequences: 3902068 Number of extensions: 3428812 Number of successful extensions: 60507 Number of sequences better than 10.0: 125 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60131 Number of HSP's gapped (non-prelim): 330 length of query: 571 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 548 effective length of database: 17,143,297,704 effective search space: 9394527141792 effective search space used: 9394527141792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
