ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal11c22 |
|---|---|
| Clone Library Name | barley_pub |
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 108 bits (269), Expect = 1e-23 Identities = 58/136 (42%), Positives = 88/136 (64%), Gaps = 1/136 (0%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P +G E+F+G LPRD E++L LCE +G+I+E+R+M D N+G+AFVTF+ K A+ Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAK 110 Query: 332 HAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFK 508 +AI++L++ + GR L S RLFVG +PK EE+ S +K GVV++ ++ Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170 Query: 509 DLHNPSRNRGFLFVEY 556 + ++NRGF FVEY Sbjct: 171 SAADKTKNRGFAFVEY 186
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 107 bits (267), Expect = 2e-23 Identities = 59/138 (42%), Positives = 89/138 (64%), Gaps = 1/138 (0%) Frame = +2 Query: 146 ALPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDV 325 A P +G E+F+G LPRD E++L LCE +G+I+E+R+M D N+G+AFVTF+ K Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVE 108 Query: 326 AQHAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 502 A++AI++L++ + GR L S RLFVG +PK EE+ S +K GVV++ + Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168 Query: 503 FKDLHNPSRNRGFLFVEY 556 + + ++NRGF FVEY Sbjct: 169 YPSAADKTKNRGFAFVEY 186
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 107 bits (266), Expect = 3e-23 Identities = 59/138 (42%), Positives = 89/138 (64%), Gaps = 1/138 (0%) Frame = +2 Query: 146 ALPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDV 325 A P +G E+F+G LPRD E++L LCE +G+I+E+R+M D N+G+AFVTF+ K Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLE 108 Query: 326 AQHAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 502 A++AI++L++ + GR L S RLFVG +PK EE+ S +K GVV++ + Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168 Query: 503 FKDLHNPSRNRGFLFVEY 556 + + ++NRGF FVEY Sbjct: 169 YPSAADKTKNRGFAFVEY 186
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 105 bits (263), Expect = 7e-23 Identities = 58/136 (42%), Positives = 87/136 (63%), Gaps = 1/136 (0%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P +G E+F+G LPRD E++L LCE +G+I+E+RLM D N+G+AFVTF+ K A+ Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAK 110 Query: 332 HAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFK 508 +AI++L++ + GR L S RLF G +PK EE+ S +K GVV++ ++ Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170 Query: 509 DLHNPSRNRGFLFVEY 556 + ++NRGF FVEY Sbjct: 171 SAADKTKNRGFAFVEY 186
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 98.6 bits (244), Expect = 1e-20 Identities = 49/136 (36%), Positives = 84/136 (61%), Gaps = 1/136 (0%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P G+E+F+G +PRD E++L L E G I+++RLM D T N+G+AFVTF K+ AQ Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127 Query: 332 HAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFK 508 A++ ++ + G+ + +S A +RLFVG++PK ++E++ G+ ++ ++ Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187 Query: 509 DLHNPSRNRGFLFVEY 556 + +NRGF F+EY Sbjct: 188 QPDDKKKNRGFCFLEY 203 Score = 36.2 bits (82), Expect = 0.064 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L TEE L + G++ V+ +KD +AF+ F +D A A+EE+ Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 301 Query: 350 HDKDHKGRTL 379 + KD +G + Sbjct: 302 NGKDLEGENI 311
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 98.6 bits (244), Expect = 1e-20 Identities = 49/136 (36%), Positives = 84/136 (61%), Gaps = 1/136 (0%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P G+E+F+G +PRD E++L L E G I+++RLM D T N+G+AFVTF K+ AQ Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217 Query: 332 HAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFK 508 A++ ++ + G+ + +S A +RLFVG++PK ++E++ G+ ++ ++ Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277 Query: 509 DLHNPSRNRGFLFVEY 556 + +NRGF F+EY Sbjct: 278 QPDDKKKNRGFCFLEY 293 Score = 36.2 bits (82), Expect = 0.064 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L TEE L + G++ V+ +KD +AF+ F +D A A+EE+ Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391 Query: 350 HDKDHKGRTL 379 + KD +G + Sbjct: 392 NGKDLEGENI 401
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 98.6 bits (244), Expect = 1e-20 Identities = 49/136 (36%), Positives = 84/136 (61%), Gaps = 1/136 (0%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P G+E+F+G +PRD E++L L E G I+++RLM D T N+G+AFVTF K+ AQ Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217 Query: 332 HAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFK 508 A++ ++ + G+ + +S A +RLFVG++PK ++E++ G+ ++ ++ Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277 Query: 509 DLHNPSRNRGFLFVEY 556 + +NRGF F+EY Sbjct: 278 QPDDKKKNRGFCFLEY 293 Score = 36.6 bits (83), Expect = 0.049 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L TEE L + G++ V+ +KD +AF+ F +D A A+EE+ Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391 Query: 350 HDKDHKGRTL 379 + KD +G + Sbjct: 392 NGKDLEGENI 401
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 97.8 bits (242), Expect = 2e-20 Identities = 50/136 (36%), Positives = 83/136 (61%), Gaps = 1/136 (0%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P G+EVF+G +PRD E++L L E G I+++RLM D + +N+G+AF+TF K+ AQ Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220 Query: 332 HAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFK 508 A++ + G+ L +S A +RLFVG++PK ++E + G+V++ ++ Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280 Query: 509 DLHNPSRNRGFLFVEY 556 + +NRGF F+EY Sbjct: 281 QPDDKKKNRGFCFLEY 296 Score = 32.3 bits (72), Expect = 0.92 Identities = 20/76 (26%), Positives = 38/76 (50%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L TEE L + G++ V+ +KD +AFV F + A A++E+ Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 394 Query: 350 HDKDHKGRTLRCSLSQ 397 + K+ +G + L++ Sbjct: 395 NGKEIEGEEIEIVLAK 410
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 73.9 bits (180), Expect = 3e-13 Identities = 40/130 (30%), Positives = 72/130 (55%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ GLP +TT++DL +LC+P G+I + + DK T + KG+ FV F + AQ A+ Sbjct: 62 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVS 121 Query: 344 ELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNP 523 L + + + Q L++ N+P + E+EL +++K G V++ + +D Sbjct: 122 ALKANGVQAQMAK-QQEQDPTNLYISNLPLSMDEQELENMLKPFGQ-VISTRVLRDSSGA 179 Query: 524 SRNRGFLFVE 553 SR GF +E Sbjct: 180 SRGVGFARME 189
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 73.2 bits (178), Expect = 5e-13 Identities = 40/130 (30%), Positives = 71/130 (54%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ GLP TT++DL +LC+P G+I + + DK T + KG+ FV F + AQ A+ Sbjct: 62 TNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 121 Query: 344 ELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNP 523 L + + + Q L++ N+P + E+EL +++K G V++ + +D Sbjct: 122 ALKASGVQAQMAK-QQEQDPTNLYISNLPLSMDEQELENMLKPFGQ-VISTRILRDSSGT 179 Query: 524 SRNRGFLFVE 553 SR GF +E Sbjct: 180 SRGVGFARME 189
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 70.5 bits (171), Expect = 3e-12 Identities = 39/130 (30%), Positives = 69/130 (53%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ GL TT++DL +LC+P G+I + + DK T + KG+ FV F + AQ A+ Sbjct: 56 TNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 115 Query: 344 ELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNP 523 L + + + Q L++ N+P + E+EL ++K G V++ + +D Sbjct: 116 ALKASGVQAQMAK-QQEQDPTNLYISNLPLSMDEQELEGMLKPFGQ-VISTRILRDTSGT 173 Query: 524 SRNRGFLFVE 553 SR GF +E Sbjct: 174 SRGVGFARME 183
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 69.7 bits (169), Expect = 5e-12 Identities = 39/130 (30%), Positives = 69/130 (53%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ GL TT++DL +LC+P G+I + + DK T + KG+ FV F + AQ A+ Sbjct: 58 TNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVT 117 Query: 344 ELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNP 523 L + + + Q L++ N+P + E+EL ++K G V++ + +D Sbjct: 118 ALKASGVQAQMAK-QQEQDPTNLYISNLPLSMDEQELEGMLKPFGQ-VISTRILRDTSGA 175 Query: 524 SRNRGFLFVE 553 SR GF +E Sbjct: 176 SRGVGFARME 185
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 69.3 bits (168), Expect = 7e-12 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 14/147 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 PP+ +++F+G LP D E L +L E G + ++ +++T +++GF FVT + + A+ Sbjct: 132 PPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAE 191 Query: 332 HAIEELHDKDHKGRTLRCSLS--------------QAKHRLFVGNVPKGLSEEELTSIIK 469 A+E + D GR L + + + +R++VGN+P G+ + L + Sbjct: 192 KAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFS 251 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFV 550 G VV+ + D R+RGF FV Sbjct: 252 EHGK-VVSARVVYD-RETGRSRGFGFV 276 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/84 (28%), Positives = 45/84 (53%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q +++G +P + L QL G++ R++ D+ET ++GF FVT ++ A Sbjct: 228 QSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDA 287 Query: 338 IEELHDKDHKGRTLRCSLSQAKHR 409 I L + GRT+R ++++ + R Sbjct: 288 IANLDGQSLDGRTIRVNVAEDRSR 311
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 65.1 bits (157), Expect = 1e-10 Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 15/150 (10%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P ++F+GGL TT+E L+Q E GEI +V +MKD +TK ++GF F+T++ Sbjct: 13 PEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYS----RA 68 Query: 332 HAIEELHD-KDHK--GRTL------------RCSLSQAKHRLFVGNVPKGLSEEELTSII 466 H +++ + + HK GR + R +LFVG + + + E +L Sbjct: 69 HMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYF 128 Query: 467 KGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 K G VV+ + D + RGF FVE+ Sbjct: 129 KQYGT-VVSAAIVVD-KETRKKRGFAFVEF 156 Score = 44.3 bits (103), Expect = 2e-04 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD 322 ++F+GG+ + E DLR + G + ++ DKET++ +GFAFV F D Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYD 160
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 63.5 bits (153), Expect = 4e-10 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 14/147 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P + +++F+G LP D E L QL + G + ++ ++ET ++GF FVT + + A Sbjct: 93 PSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAD 152 Query: 332 HAIEELHDKDHKGRTLRCSLS--------------QAKHRLFVGNVPKGLSEEELTSIIK 469 A+E D GR L + + Q +R++VGN+P + + L + Sbjct: 153 KAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFS 212 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFV 550 G VV+ + D R+RGF FV Sbjct: 213 EHGK-VVSARVVFD-RESGRSRGFGFV 237 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/80 (27%), Positives = 45/80 (56%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G +P D + L Q+ G++ R++ D+E+ ++GF FVT +++ AI L Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252 Query: 350 HDKDHKGRTLRCSLSQAKHR 409 + GRT+R + ++ + R Sbjct: 253 DGQTLDGRTIRVNAAEERPR 272
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 63.5 bits (153), Expect = 4e-10 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 11/137 (8%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G +PR TEE++R E G + EV L+KDK T + +G FV + A AI Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180 Query: 347 LHDK-DHKGRT----------LRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVN 493 LH++ G T R + + +LFVG++ K +E+E+ I G V + Sbjct: 181 LHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVED 239 Query: 494 IEMFKDLHNPSRNRGFL 544 + + +D + SR GF+ Sbjct: 240 VYLMRDEYRQSRGCGFV 256
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 62.4 bits (150), Expect = 8e-10 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 9/140 (6%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 S++ + GLP TTE+DL++ GE+ V++ KD +T +KGF FV FT + + Sbjct: 104 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 163 Query: 344 ELHDKDHKGRTLRCSLSQAK---------HRLFVGNVPKGLSEEELTSIIKGKGPGVVNI 496 + H D GR C L +K ++FVG + ++E+EL G Sbjct: 164 QRHMID--GRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGD----- 216 Query: 497 EMFKDLHNPSRNRGFLFVEY 556 D+ P R F FV + Sbjct: 217 --VMDVFIPKPFRAFAFVTF 234 Score = 42.4 bits (98), Expect = 9e-04 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 9/123 (7%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P + +VF+G D TE++LR+ G++ +V + K + FAFVTF +AQ Sbjct: 187 PLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFADDQIAQ 241 Query: 332 HAIEELHDKDHKGRTLRCSLSQAKHR---------LFVGNVPKGLSEEELTSIIKGKGPG 484 E D KG ++ S ++ KH F GN P G + +G G G Sbjct: 242 SLCGE--DLIIKGISVHISNAEPKHNSNRQLERSGRFGGN-PGGFGNQGGFGNSRGGGAG 298 Query: 485 VVN 493 + N Sbjct: 299 LGN 301
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 62.0 bits (149), Expect = 1e-09 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 14/147 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 PP+ +++F+G LP D E L + + G + ++ ++ET ++GF FVT + + A+ Sbjct: 51 PPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAE 110 Query: 332 HAIEELHDKDHKGRTLRCSLS--------------QAKHRLFVGNVPKGLSEEELTSIIK 469 A+E L+ D GR L + + + R++VGN+P + L + Sbjct: 111 KAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFS 170 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFV 550 G VV+ + D R+RGF FV Sbjct: 171 EHGK-VVSARVVSD-RETGRSRGFGFV 195 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/80 (31%), Positives = 44/80 (55%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 V++G LP D L QL G++ R++ D+ET ++GF FVT +++ AI L Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 210 Query: 350 HDKDHKGRTLRCSLSQAKHR 409 + GR +R ++++ + R Sbjct: 211 DGQTLDGRAVRVNVAEERPR 230
>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 353 Score = 61.6 bits (148), Expect = 1e-09 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 1/113 (0%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 PP GSEVF+G LP+D E L L + +G ++E RLM + N+GFA+ ++++ AQ Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQ 112 Query: 332 HAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGV 487 AI LH+ L S K L V +P L+ L ++ GPG+ Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGL 165
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 61.2 bits (147), Expect = 2e-09 Identities = 40/134 (29%), Positives = 75/134 (55%), Gaps = 4/134 (2%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +TTE++LR GEI + + D +T ++GFAF+ FT + AI++ Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTE----AIDK 112 Query: 347 LHDKDH---KGRTLRCSLSQAKH-RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDL 514 + D + + ++A+H ++FVG + +S+EE+ + G+ +V +EM D Sbjct: 113 VSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYF-GQFGNIVEVEMPFD- 170 Query: 515 HNPSRNRGFLFVEY 556 S+ +GF F+ + Sbjct: 171 KQKSQRKGFCFITF 184 Score = 44.7 bits (104), Expect = 2e-04 Identities = 18/53 (33%), Positives = 33/53 (62%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDV 325 ++F+GGL + ++E+++ G I EV + DK+ + KGF F+TF ++ V Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQV 189
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 60.8 bits (146), Expect = 2e-09 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 17/152 (11%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAK---D 322 P Q ++F+GGL TT++ L+ E G I +V +MKD +TK ++GF F+T++ D Sbjct: 20 PEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMID 79 Query: 323 VAQHAIEELHDKDHK--GRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTS 460 AQ+A + HK GRT+ + + +LFVG + EE L Sbjct: 80 NAQNA------RPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLRE 133 Query: 461 IIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 K G +V++ + D + + RGF F+E+ Sbjct: 134 YFKDFGQ-IVSVNIVSD-KDTGKKRGFAFIEF 163 Score = 46.6 bits (109), Expect = 5e-05 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL D EE LR+ + G+I V ++ DK+T + +GFAF+ F D I + Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175 Query: 347 LHDKDH--KGRTLRCSLSQAK 403 K H K +TL + AK Sbjct: 176 ---KTHSIKNKTLDVKKAIAK 193
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/72 (41%), Positives = 47/72 (65%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DT E+ L Q+ G+I EV ++KD+ET+ ++GF FVTF D A+ A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 347 LHDKDHKGRTLR 382 ++ K GR +R Sbjct: 67 MNGKSVDGRQIR 78
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/72 (41%), Positives = 47/72 (65%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DT E+ L Q+ G+I EV ++KD+ET+ ++GF FVTF D A+ A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 347 LHDKDHKGRTLR 382 ++ K GR +R Sbjct: 67 MNGKSVDGRQIR 78
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 60.5 bits (145), Expect = 3e-09 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 14/149 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P Q ++F+GGL +TT++ LR+ E G++ + +M+D +TK ++GF FVT++ + Sbjct: 23 PEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSC---VE 79 Query: 332 HAIEELHDKDHK--GRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIK 469 + + HK GR + + ++ ++FVG + + E L + Sbjct: 80 EVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFE 139 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G G + IE+ +D + RGF FV + Sbjct: 140 GYGK-IETIEVMED-RQSGKKRGFAFVTF 166 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 2/111 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GG+ DT E LR E G+I + +M+D+++ + +GFAFVTF D + + Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178 Query: 347 LHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEEL--TSIIKGKGPGVVN 493 K H C V K LS++E+ S +G+G G N Sbjct: 179 ---KYHTINLHNC------------EVKKALSKQEMQTASAQRGRGGGGSN 214
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 60.5 bits (145), Expect = 3e-09 Identities = 41/138 (29%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G+ + + LP+D T+ +L L G I R+MKD +T + G+AFV F ++ AQ+AI Sbjct: 84 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 143 Query: 341 EELHDKDHKGRTLRCSLSQ------AKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 502 + L+ + + L+ S ++ L+V N+P+ ++++EL I GK +V + Sbjct: 144 KSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIF-GKYGNIVQKNI 202 Query: 503 FKDLHNPSRNRGFLFVEY 556 +D + RG FV + Sbjct: 203 LRD-KLTGKPRGVAFVRF 219 Score = 50.4 bits (119), Expect = 3e-06 Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 2/126 (1%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ LPR T+++L ++ G I + +++DK T + +G AFV F ++ AQ AI Sbjct: 171 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 230 Query: 344 ELHDKDHKG--RTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLH 517 L++ +G + L L++ ++ + L + I GPG N + + H Sbjct: 231 ALNNVIPEGASQPLTVRLAEEHGKMKAHHFMNQLGMGPPAAPIPAAGPG-YNSMVHRGRH 289 Query: 518 NPSRNR 535 N +RN+ Sbjct: 290 NKNRNQ 295
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 60.5 bits (145), Expect = 3e-09 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 S++ + GLP TTE+DL+ GE+ V++ KD +T +KGF FV FT + + Sbjct: 104 SDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 163 Query: 344 ELHDKDHKGRTLRCSLSQAK---------HRLFVGNVPKGLSEEELTSIIKGKGPGVVNI 496 + H D GR C L +K ++FVG + ++ EEL G V Sbjct: 164 QRHMID--GRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVV--- 218 Query: 497 EMFKDLHNPSRNRGFLFVEY 556 D+ P R F FV + Sbjct: 219 ----DVFIPKPFRAFAFVTF 234 Score = 40.0 bits (92), Expect = 0.004 Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 9/123 (7%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P + +VF+G D T E+L+Q GE+ +V + K + FAFVTF VAQ Sbjct: 187 PLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFI-----PKPFRAFAFVTFADDKVAQ 241 Query: 332 HAIEELHDKDHKGRTLRCSLSQAKHR---------LFVGNVPKGLSEEELTSIIKGKGPG 484 E D KG ++ S ++ KH F GN P G + +G G G Sbjct: 242 SLCGE--DLIIKGISVHISNAEPKHNSNRQLERSGRFGGN-PGGFGNQGGFGNSRGGGAG 298 Query: 485 VVN 493 + N Sbjct: 299 LGN 301
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 60.1 bits (144), Expect = 4e-09 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 9/138 (6%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +TT+E+L + G+I + +MK+ E+ ++GF FVTF H ++ Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 347 ---------LHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 + K RTL+ +++F+G +P ++E +L + G + Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVI 127 Query: 500 MFKDLHNPSRNRGFLFVE 553 M+ SR GFL E Sbjct: 128 MYDQEKKKSRGFGFLSFE 145 Score = 57.0 bits (136), Expect = 4e-08 Identities = 26/62 (41%), Positives = 39/62 (62%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G +VFLGGLP + TE DLR G++ EV +M D+E K+++GF F++F + +H Sbjct: 95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVT 154 Query: 341 EE 346 E Sbjct: 155 NE 156
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 60.1 bits (144), Expect = 4e-09 Identities = 29/83 (34%), Positives = 49/83 (59%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +T ED++Q E G++ + LM DK T ++GF FVTF +DV + + E Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE-KVCE 169 Query: 347 LHDKDHKGRTLRCSLSQAKHRLF 415 +H + + + C +Q K +F Sbjct: 170 IHFHEINNKMVECKKAQPKEVMF 192 Score = 50.8 bits (120), Expect = 3e-06 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI-E 343 ++F+GGL T+ + LR GEI E +M+D TK ++GF FVTF + + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 344 ELHDKDHK--------GRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 H+ D K R + + ++FVG + E++ + G + Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141 Query: 500 MFKDLHNPSRNRGFLFVEY 556 MF N R+RGF FV + Sbjct: 142 MFDKTTN--RHRGFGFVTF 158
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 60.1 bits (144), Expect = 4e-09 Identities = 28/79 (35%), Positives = 49/79 (62%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +TT ED++Q E G++ + LM DK T ++GF FVTF ++D+ + + E Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE-KVCE 168 Query: 347 LHDKDHKGRTLRCSLSQAK 403 +H + + + C +Q K Sbjct: 169 IHFHEINNKMVECKKAQPK 187 Score = 55.1 bits (131), Expect = 1e-07 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 9/144 (6%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAK-DVA 328 P ++F+GGL TT+E LR+ GE+ E +M+D TK ++GF FVTF + V Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75 Query: 329 QHAIEELHDKDHK--------GRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPG 484 + + H+ D K R + + ++FVG + + E++ + G Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 135 Query: 485 VVNIEMFKDLHNPSRNRGFLFVEY 556 + MF N R+RGF FV + Sbjct: 136 DDAMLMFDKTTN--RHRGFGFVTF 157
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 60.1 bits (144), Expect = 4e-09 Identities = 29/83 (34%), Positives = 49/83 (59%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +T ED++Q E G++ + LM DK T ++GF FVTF +DV + + E Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE-KVCE 169 Query: 347 LHDKDHKGRTLRCSLSQAKHRLF 415 +H + + + C +Q K +F Sbjct: 170 IHFHEINNKMVECKKAQPKEVMF 192 Score = 50.8 bits (120), Expect = 3e-06 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI-E 343 ++F+GGL T+ + LR GEI E +M+D TK ++GF FVTF + + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 344 ELHDKDHK--------GRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 H+ D K R + + ++FVG + E++ + G + Sbjct: 82 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141 Query: 500 MFKDLHNPSRNRGFLFVEY 556 MF N R+RGF FV + Sbjct: 142 MFDKTTN--RHRGFGFVTF 158
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 60.1 bits (144), Expect = 4e-09 Identities = 30/72 (41%), Positives = 47/72 (65%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DT E+ L Q+ G+I EV ++KD+ET+ ++GF FVTF D A+ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 347 LHDKDHKGRTLR 382 ++ K GR +R Sbjct: 67 MNGKSVDGRQIR 78
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 60.1 bits (144), Expect = 4e-09 Identities = 30/72 (41%), Positives = 47/72 (65%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DT E+ L Q+ G+I EV ++KD+ET+ ++GF FVTF D A+ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 347 LHDKDHKGRTLR 382 ++ K GR +R Sbjct: 67 MNGKSVDGRQIR 78
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 60.1 bits (144), Expect = 4e-09 Identities = 30/72 (41%), Positives = 47/72 (65%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DT E+ L Q+ G+I EV ++KD+ET+ ++GF FVTF D A+ A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 347 LHDKDHKGRTLR 382 ++ K GR +R Sbjct: 67 MNGKSVDGRQIR 78
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 59.7 bits (143), Expect = 5e-09 Identities = 31/87 (35%), Positives = 50/87 (57%) Frame = +2 Query: 146 ALPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDV 325 AL + V++ L + TE++ L GEI + L+KD+ K +GF FV + + Sbjct: 255 ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP-RGFGFVNYANHEC 313 Query: 326 AQHAIEELHDKDHKGRTLRCSLSQAKH 406 AQ A++EL+DK++KG+ L +Q KH Sbjct: 314 AQKAVDELNDKEYKGKKLYVGRAQKKH 340 Score = 46.2 bits (108), Expect = 6e-05 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P + +++G L TE L +L +G + +R+ +D T+ + G+A+V F + + Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136 Query: 335 AIEELHDKDHKGRTLRCSLSQ---AKHRLFVGNV 427 A++EL+ KGR R SQ + ++ GNV Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNV 170 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/82 (30%), Positives = 44/82 (53%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 QG +F+ L + +E L+ G I ++M D++ K +KGF FV +T + A A Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKA 420 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + E++ + G+ L +L+Q K Sbjct: 421 VTEMNQRMLAGKPLYVALAQRK 442 Score = 35.4 bits (80), Expect = 0.11 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 14/143 (9%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE- 346 VF+ L + L G+I ++ D E KG+ FV F + + A AIE Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228 Query: 347 ----LHDK-----DHKGRTLRCSLSQAKH----RLFVGNVPKGLSEEELTSIIKGKGPGV 487 L+DK H R R S +A +++ N+ ++E+E + + G+ + Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLF-GQFGEI 287 Query: 488 VNIEMFKDLHNPSRNRGFLFVEY 556 ++ + KD ++ + RGF FV Y Sbjct: 288 TSLSLVKDQND--KPRGFGFVNY 308
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 59.7 bits (143), Expect = 5e-09 Identities = 41/138 (29%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G+ + + LP+D T+ +L L G I R+MKD +T + G+AFV F ++ AQ+AI Sbjct: 101 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 160 Query: 341 EELHDKDHKGRTLRCSLSQ------AKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 502 + ++ + + L+ S ++ L+V N+P+ ++++EL I GK +V + Sbjct: 161 KTVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIF-GKYGNIVQKNI 219 Query: 503 FKDLHNPSRNRGFLFVEY 556 +D R RG FV + Sbjct: 220 LRD-KLTGRPRGVAFVRF 236 Score = 46.6 bits (109), Expect = 5e-05 Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ LPR T+++L ++ G I + +++DK T +G AFV F ++ AQ AI Sbjct: 188 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAIS 247 Query: 344 ELHDKDHKG--RTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLH 517 L++ +G + L L++ ++ + L + I GPG N+ + + Sbjct: 248 ALNNVIPEGASQPLTVRLAEEHGKMKAHHFMNQLGMGPPAAPIPAAGPGYNNM-VHRGRQ 306 Query: 518 NPSRN 532 N RN Sbjct: 307 NKMRN 311
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 59.7 bits (143), Expect = 5e-09 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 21/151 (13%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G LP L +L E G + V ++ DK T ++GF FVT ++K+ + A ++ Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 347 LHDKDHKGRTLRCSLS---------------------QAKHRLFVGNVPKGLSEEELTSI 463 + + GR LR + + +R++VGN+ G+ ++ L ++ Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETL 207 Query: 464 IKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 +G VV+ ++ D + R+RGF FV Y Sbjct: 208 FSEQGK-VVDAKVVYD-RDSGRSRGFGFVTY 236 Score = 49.7 bits (117), Expect = 6e-06 Identities = 22/80 (27%), Positives = 47/80 (58%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++G L ++ L L G++ + +++ D+++ ++GF FVT+++ + +AIE Sbjct: 188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 L D GR +R S ++A+ Sbjct: 248 SLDGVDLNGRAIRVSPAEAR 267
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 59.3 bits (142), Expect = 7e-09 Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 6/130 (4%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP+D T+ +L L +G I R+M+D +T + G+AFV FT++ +Q AI+ L+ Sbjct: 134 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITV 193 Query: 365 KGRTLRCSLSQ------AKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS 526 + + L+ S ++ L+V N+P+ +++++L +I GK +V + +D Sbjct: 194 RNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF-GKYGSIVQKNILRD-KLTG 251 Query: 527 RNRGFLFVEY 556 R RG FV Y Sbjct: 252 RPRGVAFVRY 261 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/80 (27%), Positives = 43/80 (53%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ LPR T++ L + G I + +++DK T +G AFV + ++ AQ AI Sbjct: 213 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 272 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 L++ +G + S+ A+ Sbjct: 273 ALNNVIPEGGSQPLSVRLAQ 292
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 59.3 bits (142), Expect = 7e-09 Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 6/130 (4%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP+D T+ +L L +G I R+M+D +T + G+AFV FT++ +Q AI+ L+ Sbjct: 132 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITV 191 Query: 365 KGRTLRCSLSQ------AKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS 526 + + L+ S ++ L+V N+P+ +++++L +I GK +V + +D Sbjct: 192 RNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF-GKYGSIVQKNILRD-KLTG 249 Query: 527 RNRGFLFVEY 556 R RG FV Y Sbjct: 250 RPRGVAFVRY 259 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/80 (27%), Positives = 43/80 (53%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ LPR T++ L + G I + +++DK T +G AFV + ++ AQ AI Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 L++ +G + S+ A+ Sbjct: 271 ALNNVIPEGGSQPLSVRLAE 290
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 58.5 bits (140), Expect = 1e-08 Identities = 27/71 (38%), Positives = 47/71 (66%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G L + TE+ LR + EP G+I + LMKD +T +KG+ F+TF+ + A+ A+E+L Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 350 HDKDHKGRTLR 382 + + GR +R Sbjct: 325 NGFELAGRPMR 335
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 58.5 bits (140), Expect = 1e-08 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 14/147 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P + +++F+G L D + L L E G + ++ ++ET +++GF FVT ++ D A+ Sbjct: 146 PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205 Query: 332 HAIEELHDKDHKGRTLRCS--------------LSQAKHRLFVGNVPKGLSEEELTSIIK 469 A+E+ + D GR L + + + R++VGN+P + L + Sbjct: 206 TAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFS 265 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFV 550 G VV + D R+RGF FV Sbjct: 266 EHGK-VVEARVVYD-RETGRSRGFGFV 290 Score = 53.5 bits (127), Expect = 4e-07 Identities = 26/78 (33%), Positives = 45/78 (57%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 V++G LP D L QL G++ E R++ D+ET ++GF FVT + D AI L Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305 Query: 350 HDKDHKGRTLRCSLSQAK 403 ++ +GR +R ++++ + Sbjct: 306 DGQNLEGRAIRVNVAEER 323
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 58.5 bits (140), Expect = 1e-08 Identities = 39/138 (28%), Positives = 74/138 (53%), Gaps = 6/138 (4%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G+ + + LP+D T+ +L L +G I R+M+D +T + G+AFV F A+ +Q AI Sbjct: 109 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAI 168 Query: 341 EELHDKDHKGRTLRCSLSQ------AKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 502 + L+ + + L+ S ++ L+V N+P+ +++++L +I GK +V + Sbjct: 169 KSLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF-GKYGMIVQKNI 227 Query: 503 FKDLHNPSRNRGFLFVEY 556 +D + RG FV + Sbjct: 228 LRD-KLTGKPRGVAFVRF 244 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/64 (31%), Positives = 37/64 (57%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ LPR T++ L + G I + +++DK T + +G AFV F ++ AQ AI Sbjct: 196 TNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 255 Query: 344 ELHD 355 L++ Sbjct: 256 ALNN 259
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 58.5 bits (140), Expect = 1e-08 Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 4/140 (2%) Frame = +2 Query: 149 LPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVA 328 L + ++F+GGL DTTE++LR+ G + ++++MKD T ++GF F++F Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213 Query: 329 QHAIEELHDKDHK----GRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNI 496 ++ H D K R + ++FVG + + +E G +++ Sbjct: 214 DEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT-IIDA 272 Query: 497 EMFKDLHNPSRNRGFLFVEY 556 ++ D + ++RGF FV Y Sbjct: 273 QLMLD-KDTGQSRGFGFVTY 291 Score = 45.8 bits (107), Expect = 8e-05 Identities = 21/80 (26%), Positives = 41/80 (51%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GG+ D ++ + G I + +LM DK+T +++GF FVT+ + D + Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303 Query: 347 LHDKDHKGRTLRCSLSQAKH 406 D K R + ++ +H Sbjct: 304 KF-IDFKDRKIEIKRAEPRH 322
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 58.2 bits (139), Expect = 2e-08 Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL TTEE+L+ G++ +V +M+D TK ++GF F+T+T + A E Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 347 L-HDKDHKGRTLRCSLSQAKH----------RLFVGNVPKGLSEEELTSIIKGKGPGVVN 493 H D K + +L + + +LFVG + EE L G VV+ Sbjct: 93 RPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFG-NVVS 151 Query: 494 IEMFKDLHNPSRNRGFLFVEY 556 +++ D + RGF FVE+ Sbjct: 152 VKLLTD-KTTGKRRGFAFVEF 171 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 7/69 (10%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVA------ 328 ++F+GGL + EE LR+ G + V+L+ DK T + +GFAFV F D Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183 Query: 329 -QHAIEELH 352 QHAI+ +H Sbjct: 184 KQHAIKYVH 192
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 58.2 bits (139), Expect = 2e-08 Identities = 28/72 (38%), Positives = 46/72 (63%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +T E+ L + G I EV LMKD+ET +++GFAFVTF + A+ A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 347 LHDKDHKGRTLR 382 ++ K G+ ++ Sbjct: 69 MNGKSLDGKAIK 80
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/72 (41%), Positives = 45/72 (62%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +T E+ L Q G I EV ++KD+ETK ++GF FVTF D A+ A+ Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 347 LHDKDHKGRTLR 382 ++ K GR +R Sbjct: 66 MNGKSVDGRQIR 77
>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 352 Score = 58.2 bits (139), Expect = 2e-08 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 4/114 (3%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 PP GSEV++G LP+D E L L + +G ++E RLM + N+GFA+ ++++ AQ Sbjct: 54 PPSGSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQ 112 Query: 332 HAIEELHDKDHKGRTLRCSL----SQAKHRLFVGNVPKGLSEEELTSIIKGKGP 481 AI LH +H+ R C L S K L V +P L+ L ++ GP Sbjct: 113 AAIATLH--NHQLRP-SCQLLVCRSTEKCELTVDGLPLSLNRRALLLALQPFGP 163
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 58.2 bits (139), Expect = 2e-08 Identities = 27/79 (34%), Positives = 48/79 (60%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +TT ED++ E G++ + LM DK T ++GF FVTF ++D+ + + E Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE-KVCE 168 Query: 347 LHDKDHKGRTLRCSLSQAK 403 +H + + + C +Q K Sbjct: 169 IHFHEINNKMVECKKAQPK 187 Score = 54.7 bits (130), Expect = 2e-07 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 9/144 (6%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAK-DVA 328 P ++F+GGL TT+E LR+ GE+ E +M+D TK ++GF FVTF + V Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75 Query: 329 QHAIEELHDKDHK--------GRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPG 484 + + H+ D K R + + ++FVG + + E++ + G Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135 Query: 485 VVNIEMFKDLHNPSRNRGFLFVEY 556 + MF N R+RGF FV + Sbjct: 136 DDAMLMFDKTTN--RHRGFGFVTF 157
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 58.2 bits (139), Expect = 2e-08 Identities = 27/79 (34%), Positives = 48/79 (60%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +TT ED++ E G++ + LM DK T ++GF FVTF ++D+ + + E Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE-KVCE 168 Query: 347 LHDKDHKGRTLRCSLSQAK 403 +H + + + C +Q K Sbjct: 169 IHFHEINNKMVECKKAQPK 187 Score = 54.7 bits (130), Expect = 2e-07 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 9/144 (6%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAK-DVA 328 P ++F+GGL TT+E LR+ GE+ E +M+D TK ++GF FVTF + V Sbjct: 16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75 Query: 329 QHAIEELHDKDHK--------GRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPG 484 + + H+ D K R + + ++FVG + + E++ + G Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135 Query: 485 VVNIEMFKDLHNPSRNRGFLFVEY 556 + MF N R+RGF FV + Sbjct: 136 DDAMLMFDKTTN--RHRGFGFVTF 157
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 57.8 bits (138), Expect = 2e-08 Identities = 25/77 (32%), Positives = 49/77 (63%) Frame = +2 Query: 173 FLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELH 352 F+GGL T +EDL++ G++ + +++ D+E+ ++GF FVTF + + AIEE++ Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 353 DKDHKGRTLRCSLSQAK 403 K+ GR + + +Q++ Sbjct: 69 GKELDGRVITVNEAQSR 85
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 57.4 bits (137), Expect = 3e-08 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 11/146 (7%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFT------ 313 P Q ++F+GGL +TT++ LR+ E G + + +M+D +TK ++GF FVT++ Sbjct: 31 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 90 Query: 314 -AKDVAQHAIEELHDKDHKGRTLRCSLSQAKH----RLFVGNVPKGLSEEELTSIIKGKG 478 A H ++ + + + S+ H ++FVG + + E L + G Sbjct: 91 AAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG 150 Query: 479 PGVVNIEMFKDLHNPSRNRGFLFVEY 556 + IE+ +D + RGF FV + Sbjct: 151 K-IETIEVMED-RQSGKKRGFAFVTF 174 Score = 51.6 bits (122), Expect = 1e-06 Identities = 32/106 (30%), Positives = 52/106 (49%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GG+ DT E +LR E G+I + +M+D+++ + +GFAFVTF D + + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 347 LHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPG 484 K H C V K LS++E+ S +G G Sbjct: 187 ---KYHTINGHNC------------EVKKALSKQEMQSAGSQRGRG 217
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 57.4 bits (137), Expect = 3e-08 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 11/146 (7%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFT------ 313 P Q ++F+GGL +TT++ LR+ E G + + +M+D +TK ++GF FVT++ Sbjct: 31 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 90 Query: 314 -AKDVAQHAIEELHDKDHKGRTLRCSLSQAKH----RLFVGNVPKGLSEEELTSIIKGKG 478 A H ++ + + + S+ H ++FVG + + E L + G Sbjct: 91 AAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG 150 Query: 479 PGVVNIEMFKDLHNPSRNRGFLFVEY 556 + IE+ +D + RGF FV + Sbjct: 151 K-IETIEVMED-RQSGKKRGFAFVTF 174 Score = 51.6 bits (122), Expect = 1e-06 Identities = 32/106 (30%), Positives = 52/106 (49%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GG+ DT E +LR E G+I + +M+D+++ + +GFAFVTF D + + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 347 LHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPG 484 K H C V K LS++E+ S +G G Sbjct: 187 ---KYHTINGHNC------------EVKKALSKQEMQSAGSQRGRG 217
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 57.4 bits (137), Expect = 3e-08 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 11/146 (7%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFT------ 313 P Q ++F+GGL +TT++ LR+ E G + + +M+D +TK ++GF FVT++ Sbjct: 31 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 90 Query: 314 -AKDVAQHAIEELHDKDHKGRTLRCSLSQAKH----RLFVGNVPKGLSEEELTSIIKGKG 478 A H ++ + + + S+ H ++FVG + + E L + G Sbjct: 91 AAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG 150 Query: 479 PGVVNIEMFKDLHNPSRNRGFLFVEY 556 + IE+ +D + RGF FV + Sbjct: 151 K-IETIEVMED-RQSGKKRGFAFVTF 174 Score = 51.6 bits (122), Expect = 1e-06 Identities = 32/106 (30%), Positives = 52/106 (49%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GG+ DT E +LR E G+I + +M+D+++ + +GFAFVTF D + + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 347 LHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPG 484 K H C V K LS++E+ S +G G Sbjct: 187 ---KYHTINGHNC------------EVKKALSKQEMQSAGSQRGRG 217
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 57.4 bits (137), Expect = 3e-08 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 14/149 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P Q ++F+GGL +TT++ LR+ E G++ + +M+D +TK ++GF FVT++ + Sbjct: 23 PEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSC---VE 79 Query: 332 HAIEELHDKDHK--GRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIK 469 + + HK GR + + ++ ++FVG + + E L + Sbjct: 80 EVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSE 139 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G + IE+ +D + RGF FV + Sbjct: 140 SYGK-IETIEVMED-RQSGKKRGFAFVTF 166 Score = 51.2 bits (121), Expect = 2e-06 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 2/111 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GG+ DT E LR E G+I + +M+D+++ + +GFAFVTF D + + Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178 Query: 347 LHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEEL--TSIIKGKGPGVVN 493 K H C V K LS++E+ S +G+G G N Sbjct: 179 ---KYHTINGHNC------------EVKKALSKQEMQTASAQRGRGGGGSN 214
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 57.4 bits (137), Expect = 3e-08 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 14/149 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P Q ++F+GGL +TT+E LR+ E G + + +M+D +K ++GF FVT+ + D Sbjct: 10 PEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVD 69 Query: 332 HAIEELHDKDHK--GRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIK 469 A+ + HK GR + + ++ ++FVG + + E+ L + Sbjct: 70 AAMTA---RPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFE 126 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G + IE+ D + RGF FV + Sbjct: 127 QYGK-IEVIEIMTD-RGSGKKRGFAFVTF 153 Score = 52.4 bits (124), Expect = 9e-07 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD-VAQHAIE 343 ++F+GG+ DT E+ LR+ E G+I + +M D+ + + +GFAFVTF D V + I+ Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQ 165 Query: 344 ELHDKDHKGRTLRCSLSQ 397 + H ++ +R +LS+ Sbjct: 166 KYHTVNNHNSQVRKALSK 183
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 57.4 bits (137), Expect = 3e-08 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 8/138 (5%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DTT++DL+ GE+ + L D T ++GF FV F + +++ Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 347 LHDKDHK--GRTL---RCSLSQAKH---RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 502 K+HK G+ + R + K ++FVG + EE++ G G V +IE+ Sbjct: 158 ---KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIEL 213 Query: 503 FKDLHNPSRNRGFLFVEY 556 D + ++ RGF F+ + Sbjct: 214 PMD-NKTNKRRGFCFITF 230 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DT EE +R+ GE+ + L D +T + +GF F+TF ++ + +E+ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242 Query: 347 LHDKDHKGRTLRCSLSQA 400 K H +C + A Sbjct: 243 ---KYHNVGLSKCEIKVA 257
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 57.4 bits (137), Expect = 3e-08 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 8/138 (5%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DTT++DL+ GE+ + L D T ++GF FV F + +++ Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 347 LHDKDHK--GRTL---RCSLSQAKH---RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 502 K+HK G+ + R + K ++FVG + EE++ G G V +IE+ Sbjct: 158 ---KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIEL 213 Query: 503 FKDLHNPSRNRGFLFVEY 556 D + ++ RGF F+ + Sbjct: 214 PMD-NKTNKRRGFCFITF 230 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DT EE +R+ GE+ + L D +T + +GF F+TF ++ + +E+ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242 Query: 347 LHDKDHKGRTLRCSLSQA 400 K H +C + A Sbjct: 243 ---KYHNVGLSKCEIKVA 257
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 57.0 bits (136), Expect = 4e-08 Identities = 36/99 (36%), Positives = 54/99 (54%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q S +F+G LP D TEE++R+L E G+ EV + KD KGF F+ + +A+ A Sbjct: 72 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIA 125 Query: 338 IEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEEL 454 EL + +G+ LR + L V N+P+ +S E L Sbjct: 126 KVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELL 164
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 57.0 bits (136), Expect = 4e-08 Identities = 36/99 (36%), Positives = 54/99 (54%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q S +F+G LP D TEE++R+L E G+ EV + KD KGF F+ + +A+ A Sbjct: 72 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIA 125 Query: 338 IEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEEL 454 EL + +G+ LR + L V N+P+ +S E L Sbjct: 126 KVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELL 164
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 57.0 bits (136), Expect = 4e-08 Identities = 36/99 (36%), Positives = 54/99 (54%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q S +F+G LP D TEE++R+L E G+ EV + KD KGF F+ + +A+ A Sbjct: 74 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIA 127 Query: 338 IEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEEL 454 EL + +G+ LR + L V N+P+ +S E L Sbjct: 128 KVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELL 166
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 57.0 bits (136), Expect = 4e-08 Identities = 36/99 (36%), Positives = 54/99 (54%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q S +F+G LP D TEE++R+L E G+ EV + KD KGF F+ + +A+ A Sbjct: 77 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIA 130 Query: 338 IEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEEL 454 EL + +G+ LR + L V N+P+ +S E L Sbjct: 131 KVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELL 169
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 57.0 bits (136), Expect = 4e-08 Identities = 26/80 (32%), Positives = 43/80 (53%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P V+LG +P D TEE + LC +G + +++M D +T +KG+AF+ F + + Sbjct: 15 PPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSAS 74 Query: 335 AIEELHDKDHKGRTLRCSLS 394 A+ L+ R L+C S Sbjct: 75 AVRNLNGYQLGSRFLKCGYS 94
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 57.0 bits (136), Expect = 4e-08 Identities = 26/71 (36%), Positives = 46/71 (64%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G L + TE+ LR + EP G I ++LM D ET +KG+ F+TF+ + A+ A+E+L Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 350 HDKDHKGRTLR 382 + + GR ++ Sbjct: 312 NGFELAGRPMK 322
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 57.0 bits (136), Expect = 4e-08 Identities = 26/71 (36%), Positives = 46/71 (64%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G L + TE+ LR + EP G I ++LM D ET +KG+ F+TF+ + A+ A+E+L Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 350 HDKDHKGRTLR 382 + + GR ++ Sbjct: 312 NGFELAGRPMK 322
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 56.6 bits (135), Expect = 5e-08 Identities = 33/107 (30%), Positives = 55/107 (51%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G +P + TEE L+ + +G + RL+ D+ET + KG+ F + ++ A A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 350 HDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVV 490 + ++ GR LR V N ++EEL S+ G G V+ Sbjct: 78 NGREFSGRALR-----------VDNAASEKNKEELKSL--GTGAPVI 111 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +2 Query: 386 SLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 ++ ++ +FVGN+P +EE+L I GP VV+ + D + +G+ F EY Sbjct: 10 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGP-VVSFRLVYD-RETGKPKGYGFCEY 64
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 56.6 bits (135), Expect = 5e-08 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +FL + D TEED +QL P GE+ EV + D T ++KGFA+V F + A +A EL Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362 Query: 350 HDKDHKGRTLRCSLSQAK--HRL 412 + +GR L + AK HRL Sbjct: 363 DKQIFQGRLLHILPADAKKTHRL 385 Score = 39.7 bits (91), Expect = 0.006 Identities = 23/71 (32%), Positives = 39/71 (54%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++ + LP + T +D+ +L G++ VR+ K K K +GFAFV F A++A+++ Sbjct: 713 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPK-KFDKSARGFAFVEFLLPSEAENAMDQ 771 Query: 347 LHDKDHKGRTL 379 L GR L Sbjct: 772 LQGVHLLGRRL 782
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 56.6 bits (135), Expect = 5e-08 Identities = 33/107 (30%), Positives = 55/107 (51%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G +P + TEE L+ + +G + RL+ D+ET + KG+ F + ++ A A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 350 HDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVV 490 + ++ GR LR V N ++EEL S+ G G V+ Sbjct: 78 NGREFSGRALR-----------VDNAASEKNKEELKSL--GTGAPVI 111 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +2 Query: 386 SLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 ++ ++ +FVGN+P +EE+L I GP VV+ + D + +G+ F EY Sbjct: 10 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGP-VVSFRLVYD-RETGKPKGYGFCEY 64
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 56.6 bits (135), Expect = 5e-08 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 14/149 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P ++F+GGL +TT++ +R+ GEI ++ +M+D TK ++GF FVTF+ K Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVD 78 Query: 332 HAIEELHDKDH--KGRTL------------RCSLSQAKHRLFVGNVPKGLSEEELTSIIK 469 A+++ + H G+T+ R + + RL+V V + +E+ LT Sbjct: 79 AAMKQ---RPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFT 135 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G V E+ D + RGF FV + Sbjct: 136 KYGT-VTKSEIILD-KATQKPRGFGFVTF 162 Score = 40.8 bits (94), Expect = 0.003 Identities = 26/96 (27%), Positives = 46/96 (47%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++ G+ D TE+ L + G + + ++ DK T++ +GF FVTF D + + Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ- 174 Query: 350 HDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELT 457 K H RC +V KGLS++E++ Sbjct: 175 --KSHMVNGHRC------------DVRKGLSKDEMS 196
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 56.6 bits (135), Expect = 5e-08 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 13/146 (8%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q ++F+GGL +TTEE LR E G + + +M+D +K ++GF FVTF+ + A Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAA 66 Query: 338 I-EELHDKDHKGRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIKGKG 478 + H D GR + + A+ +LFVG + + E L + G Sbjct: 67 MATRPHTID--GRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYG 124 Query: 479 PGVVNIEMFKDLHNPSRNRGFLFVEY 556 + +IE+ D + + RGF FV + Sbjct: 125 K-IDSIEIITDKQS-GKKRGFAFVTF 148 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD-VAQHAIE 343 ++F+GG+ DT E LR+ E G+I + ++ DK++ + +GFAFVTF D V + ++ Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQ 160 Query: 344 ELHDKDHKGRTLRCSLSQ 397 + H + +R +LS+ Sbjct: 161 KYHTINGHNAEVRKALSK 178
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 56.6 bits (135), Expect = 5e-08 Identities = 33/107 (30%), Positives = 55/107 (51%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G +P + TEE L+ + +G + RL+ D+ET + KG+ F + ++ A A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 350 HDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVV 490 + ++ GR LR V N ++EEL S+ G G V+ Sbjct: 78 NGREFSGRALR-----------VDNAASEKNKEELKSL--GTGAPVI 111 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +2 Query: 386 SLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 ++ ++ +FVGN+P +EE+L I GP VV+ + D + +G+ F EY Sbjct: 10 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGP-VVSFRLVYD-RETGKPKGYGFCEY 64
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 56.6 bits (135), Expect = 5e-08 Identities = 33/107 (30%), Positives = 55/107 (51%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G +P + TEE L+ + +G + RL+ D+ET + KG+ F + ++ A A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 350 HDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVV 490 + ++ GR LR V N ++EEL S+ G G V+ Sbjct: 78 NGREFSGRALR-----------VDNAASEKNKEELKSL--GTGAPVI 111 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +2 Query: 386 SLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 ++ ++ +FVGN+P +EE+L I GP VV+ + D + +G+ F EY Sbjct: 10 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGP-VVSFRLVYD-RETGKPKGYGFCEY 64
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 56.2 bits (134), Expect = 6e-08 Identities = 26/72 (36%), Positives = 45/72 (62%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +T E+ L + G I E+ LMKD+ET +++GFAFVTF + A+ + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 347 LHDKDHKGRTLR 382 ++ K G+ ++ Sbjct: 69 MNGKSLDGKAIK 80
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 56.2 bits (134), Expect = 6e-08 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 14/149 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P Q ++F+GGL +TT+E LR E G + + +M+D TK ++GF FVT+ + Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 68 Query: 332 HAIEELHDKDHK--GRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIK 469 A ++ + HK GR + + ++ ++FVG + + E L + Sbjct: 69 AA---MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 125 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G + IE+ D + RGF FV + Sbjct: 126 QYGK-IEVIEIMTD-RGSGKKRGFAFVTF 152 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD-VAQHAIE 343 ++F+GG+ DT E LR E G+I + +M D+ + + +GFAFVTF D V + I+ Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 344 ELH 352 + H Sbjct: 165 KYH 167
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 56.2 bits (134), Expect = 6e-08 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 14/149 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P Q ++F+GGL +TT+E LR E G + + +M+D TK ++GF FVT+ + Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 68 Query: 332 HAIEELHDKDHK--GRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIK 469 A ++ + HK GR + + ++ ++FVG + + E L + Sbjct: 69 AA---MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 125 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G + IE+ D + RGF FV + Sbjct: 126 QYGK-IEVIEIMTD-RGSGKKRGFAFVTF 152 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD-VAQHAIE 343 ++F+GG+ DT E LR E G+I + +M D+ + + +GFAFVTF D V + I+ Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 344 ELHDKDHKGRTLRCSLSQ 397 + H + +R +LS+ Sbjct: 165 KYHTVNGHNCEVRKALSK 182
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 56.2 bits (134), Expect = 6e-08 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 14/149 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P Q ++F+GGL +TT+E LR E G + + +M+D TK ++GF FVT+ + Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVD 68 Query: 332 HAIEELHDKDHK--GRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIK 469 A ++ + HK GR + + ++ ++FVG + + E L + Sbjct: 69 AA---MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 125 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G + IE+ D + RGF FV + Sbjct: 126 QYGK-IEVIEIMTD-RGSGKKRGFAFVTF 152
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 56.2 bits (134), Expect = 6e-08 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 14/149 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P Q ++F+GGL +TT+E LR E G + + +M+D TK ++GF FVT+ + Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 68 Query: 332 HAIEELHDKDHK--GRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIK 469 A ++ + HK GR + + ++ ++FVG + + E L + Sbjct: 69 AA---MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 125 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G + IE+ D + RGF FV + Sbjct: 126 QYGK-IEVIEIMTD-RGSGKKRGFAFVTF 152 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD-VAQHAIE 343 ++F+GG+ DT E LR E G+I + +M D+ + + +GFAFVTF D V + I+ Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 344 ELHDKDHKGRTLRCSLSQ 397 + H + +R +LS+ Sbjct: 165 KYHTVNGHNCEVRKALSK 182
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 56.2 bits (134), Expect = 6e-08 Identities = 30/98 (30%), Positives = 51/98 (52%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G +P + TEE L+ + +G + RL+ D+ET + KG+ F + ++ A A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 350 HDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSI 463 + ++ GR LR V N ++EEL S+ Sbjct: 78 NGREFSGRALR-----------VDNAASEKNKEELKSL 104 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +2 Query: 386 SLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 ++ ++ +FVGN+P +EE+L I G VV+ + D + +G+ F EY Sbjct: 10 AMDRSLRSVFVGNIPYEATEEQLKDIFSEVG-SVVSFRLVYD-RETGKPKGYGFCEY 64
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 56.2 bits (134), Expect = 6e-08 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 14/149 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P ++F+GGL TT+E+L+ E G I +V +MKD TK ++GF F+T++ + Sbjct: 27 PEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMID 86 Query: 332 HAIEELHDKDHK--GRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIK 469 A + + HK GR + + + +LFVG + E+ + + Sbjct: 87 EAQK---SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQ 143 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G +V+I + D + RGF FVE+ Sbjct: 144 HFG-NIVDINIVID-KETGKKRGFAFVEF 170 Score = 42.7 bits (99), Expect = 7e-04 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD-VAQHAIE 343 ++F+G L D E+ +R + G I ++ ++ DKET + +GFAFV F D V + ++ Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182 Query: 344 ELHDKDHK 367 + H + K Sbjct: 183 KQHQLNGK 190
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 56.2 bits (134), Expect = 6e-08 Identities = 30/98 (30%), Positives = 51/98 (52%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G +P + TEE L+ + +G + RL+ D+ET + KG+ F + ++ A A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 350 HDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSI 463 + ++ GR LR V N ++EEL S+ Sbjct: 78 NGREFSGRALR-----------VDNAASEKNKEELKSL 104 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +2 Query: 386 SLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 ++ ++ +FVGN+P +EE+L I G VV+ + D + +G+ F EY Sbjct: 10 AMDRSLRSVFVGNIPYEATEEQLKDIFSEVG-SVVSFRLVYD-RETGKPKGYGFCEY 64
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 56.2 bits (134), Expect = 6e-08 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 11/144 (7%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFT-------A 316 Q ++F+GGL +TTEE LR E G++ + +M+D +K ++GF FVTF+ A Sbjct: 7 QFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAA 66 Query: 317 KDVAQHAIEELHDKDHKGRTLRCSLSQAKH----RLFVGNVPKGLSEEELTSIIKGKGPG 484 H I+ + + S H +LFVG + + E L + G Sbjct: 67 MSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGK- 125 Query: 485 VVNIEMFKDLHNPSRNRGFLFVEY 556 + + E+ D + + RGF FV + Sbjct: 126 IESTEIITDKQS-GKKRGFGFVTF 148 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD-VAQHAIE 343 ++F+GG+ DT E LR+ E G+I ++ DK++ + +GF FVTF D V + ++ Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160 Query: 344 ELHDKDHKGRTLRCSLSQ 397 + H + +R +LS+ Sbjct: 161 KYHTINGHNAEVRKALSK 178
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 56.2 bits (134), Expect = 6e-08 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 8/138 (5%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DTT++DL+ G++ + L D T ++GF FV F + +++ Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155 Query: 347 LHDKDHK--GRTL---RCSLSQAKH---RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 502 K+HK G+ + R + K ++FVG + EE++ G G V +IE+ Sbjct: 156 ---KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIEL 211 Query: 503 FKDLHNPSRNRGFLFVEY 556 D + ++ RGF F+ + Sbjct: 212 PMD-NKTNKRRGFCFITF 228 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DT EE +R+ GE+ + L D +T + +GF F+TF ++ + +E+ Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240 Query: 347 LHDKDHKGRTLRCSLSQA 400 K H +C + A Sbjct: 241 ---KYHNVGLSKCEIKVA 255
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 56.2 bits (134), Expect = 6e-08 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 14/149 (9%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P Q ++F+GGL +TT+E LR E G + + +M+D TK ++GF FVT+ + Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 68 Query: 332 HAIEELHDKDHK--GRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIK 469 A ++ + HK GR + + ++ ++FVG + + E L + Sbjct: 69 AA---MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 125 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G + IE+ D + RGF FV + Sbjct: 126 QYGK-IEVIEIMTD-RGSGKKRGFAFVTF 152 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD-VAQHAIE 343 ++F+GG+ DT E LR E G+I + +M D+ + + +GFAFVTF D V + I+ Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 344 ELHDKDHKGRTLRCSLSQ 397 + H + +R +LS+ Sbjct: 165 KYHTVNGHNCEVRKALSK 182
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 55.8 bits (133), Expect = 8e-08 Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 18/147 (12%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 V++G + + E+ +R P G I + + D T+++KGFAFV + + AQ A+E++ Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 350 HDKDHKGRTLR----CSLSQAK-------------HRLFVGNVPKGLSEEELTSIIKGKG 478 + GR ++ ++ QA+ +R++V ++ LSEE++ S+ + G Sbjct: 192 NGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFG 251 Query: 479 PGV-VNIEMFKDLHNPSRNRGFLFVEY 556 P + + LH ++G+ F+EY Sbjct: 252 PILYCKLAQGTSLHT---HKGYGFIEY 275 Score = 39.3 bits (90), Expect = 0.008 Identities = 19/77 (24%), Positives = 37/77 (48%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ + D +EED++ + E G I +L + +KG+ F+ + K AI Sbjct: 227 NRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIA 286 Query: 344 ELHDKDHKGRTLRCSLS 394 ++ D G+ LR S Sbjct: 287 SMNLFDLGGQLLRVGRS 303
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 55.5 bits (132), Expect = 1e-07 Identities = 25/77 (32%), Positives = 48/77 (62%) Frame = +2 Query: 173 FLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELH 352 F+GGL T + +L + GE+ + +++ D+ET ++GF FVTF + + AI+E++ Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 353 DKDHKGRTLRCSLSQAK 403 K+ GRT+ + +Q++ Sbjct: 69 GKELDGRTITVNEAQSR 85
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 55.5 bits (132), Expect = 1e-07 Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 18/152 (11%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P S +FL + + T+E LR+ P G+I ++ +++DK TKE+KG AFV F A Sbjct: 23 PPNSRIFLV-ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACR 81 Query: 335 AIEELHDK---DHKGRTLRCSLSQAKH-------------RLFVGNVPKGLSEEELTSII 466 A+EE+H + + + ++ ++Q++ R+FV +PK +EE+L Sbjct: 82 AMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKF 140 Query: 467 KGKGPGVVNIEMFKDLHN--PSRNRGFLFVEY 556 K G +IE + N ++G +V Y Sbjct: 141 KVYG----DIEYCSVIKNKVTGESKGLGYVRY 168 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 +P+ TEEDLR+ + G+I ++K+K T E+KG +V + A AIE Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIENC----- 181 Query: 365 KGRTLRCSLSQAKHRL 412 R+ R L++ K+++ Sbjct: 182 -DRSFRALLAEPKNKV 196
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 55.5 bits (132), Expect = 1e-07 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 13/146 (8%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTA-KDVAQH 334 Q ++F+GGL +TTEE LR E G++ + +M+D +K ++GF FVTF++ +V Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 66 Query: 335 AIEELHDKDHKGRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIKGKG 478 H D GR + + A+ +LFVG + + E L + G Sbjct: 67 MAARPHSID--GRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 124 Query: 479 PGVVNIEMFKDLHNPSRNRGFLFVEY 556 + IE+ D + RGF FV + Sbjct: 125 K-IDTIEIITD-RQSGKKRGFGFVTF 148 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD-VAQHAIE 343 ++F+GG+ DT E LR E G+I + ++ D+++ + +GF FVTF D V + ++ Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160 Query: 344 ELHDKDHKGRTLRCSLSQ 397 + H + +R +LS+ Sbjct: 161 KYHTINGHNAEVRKALSR 178
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 55.5 bits (132), Expect = 1e-07 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 13/146 (8%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTA-KDVAQH 334 Q ++F+GGL +TTEE LR E G++ + +M+D +K ++GF FVTF++ +V Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78 Query: 335 AIEELHDKDHKGRTLRCSLSQAKH------------RLFVGNVPKGLSEEELTSIIKGKG 478 H D GR + + A+ +LFVG + + E L + G Sbjct: 79 MAARPHSID--GRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 136 Query: 479 PGVVNIEMFKDLHNPSRNRGFLFVEY 556 + IE+ D + RGF FV + Sbjct: 137 K-IDTIEIITD-RQSGKKRGFGFVTF 160 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD-VAQHAIE 343 ++F+GG+ DT E LR E G+I + ++ D+++ + +GF FVTF D V + ++ Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172 Query: 344 ELHDKDHKGRTLRCSLSQ 397 + H + +R +LS+ Sbjct: 173 KYHTINGHNAEVRKALSR 190
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 55.1 bits (131), Expect = 1e-07 Identities = 26/72 (36%), Positives = 45/72 (62%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +T E+ L + G I E+ LMKD+ET +++GFAFVT + A+ A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 347 LHDKDHKGRTLR 382 ++ K G+ ++ Sbjct: 69 MNGKSLDGKAIK 80
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 6/126 (4%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP++ T+E+ R L +GEI +L++DK T ++ G+ FV + A+ AI L+ Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 112 Query: 365 KGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS 526 + +T++ S ++ L+V +PK ++++EL + G + + + + S Sbjct: 113 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 172 Query: 527 RNRGFL 544 R GF+ Sbjct: 173 RGVGFI 178 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/78 (35%), Positives = 39/78 (50%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L D+ E L QL P G + V++++D T + KGF FVT T D A AI L Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 350 HDKDHKGRTLRCSLSQAK 403 + R L+ S K Sbjct: 359 NGYRLGDRVLQVSFKTNK 376
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 55.1 bits (131), Expect = 1e-07 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G LPR+ TE+++R L E G++ E ++K+ + FV K A+ AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 347 LHDKDHKGRTLRC----SLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKD 511 LH G + + S+A +L VGN+ + +EL + + GP V+ ++ KD Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGP-VIECDIVKD 112
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 55.1 bits (131), Expect = 1e-07 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G LPR+ TE+++R L E G++ E ++K+ + FV K A+ AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 347 LHDKDHKGRTLRC----SLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKD 511 LH G + + S+A +L VGN+ + +EL + + GP V+ ++ KD Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGP-VIECDIVKD 112
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 6/126 (4%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP++ T+E+ R L +GEI +L++DK T ++ G+ FV + A+ AI L+ Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 117 Query: 365 KGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS 526 + +T++ S ++ L+V +PK ++++EL + G + + + + S Sbjct: 118 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 177 Query: 527 RNRGFL 544 R GF+ Sbjct: 178 RGVGFI 183 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/78 (35%), Positives = 39/78 (50%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L D+ E L QL P G + V++++D T + KGF FVT T D A AI L Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 350 HDKDHKGRTLRCSLSQAK 403 + R L+ S K Sbjct: 364 NGYRLGDRVLQVSFKTNK 381
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 55.1 bits (131), Expect = 1e-07 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G LPR+ TE+++R L E G++ E ++K+ + FV K A+ AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 347 LHDKDHKGRTLRC----SLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKD 511 LH G + + S+A +L VGN+ + +EL + + GP V+ ++ KD Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGP-VIECDIVKD 112
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 55.1 bits (131), Expect = 1e-07 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G LPR+ TE+++R L E G++ E ++K+ + FV K A+ AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 347 LHDKDHKGRTLRC----SLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKD 511 LH G + + S+A +L VGN+ + +EL + + GP V+ ++ KD Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGP-VIECDIVKD 112
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 55.1 bits (131), Expect = 1e-07 Identities = 24/76 (31%), Positives = 48/76 (63%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++GGL + TE L P G+I ++++ D E++ ++GFAF+ + + A AI+ + Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 350 HDKDHKGRTLRCSLSQ 397 +D + GRT+R +L++ Sbjct: 68 NDSELCGRTIRVNLAK 83
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 6/126 (4%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP++ T+E+L+ L +GEI +L++DK T ++ G+ FV + A+ AI L+ Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 365 KGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS 526 + +T++ S ++ L+V +PK ++++EL + G + + + + S Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGIS 165 Query: 527 RNRGFL 544 R GF+ Sbjct: 166 RGVGFI 171 Score = 45.1 bits (105), Expect = 1e-04 Identities = 29/84 (34%), Positives = 40/84 (47%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P G +F+ L D E L Q+ P G + V++++D T + KGF FVT T D A Sbjct: 272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331 Query: 332 HAIEELHDKDHKGRTLRCSLSQAK 403 AI L+ R L+ S K Sbjct: 332 MAIASLNGYRLGDRVLQVSFKTNK 355
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 6/126 (4%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP++ T+E+L+ L +GEI +L++DK T ++ G+ FV + A+ AI L+ Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 365 KGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS 526 + +T++ S ++ L+V +PK ++++EL + G + + + + S Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGIS 165 Query: 527 RNRGFL 544 R GF+ Sbjct: 166 RGVGFI 171 Score = 45.1 bits (105), Expect = 1e-04 Identities = 29/84 (34%), Positives = 40/84 (47%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P G +F+ L D E L Q+ P G + V++++D T + KGF FVT T D A Sbjct: 272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331 Query: 332 HAIEELHDKDHKGRTLRCSLSQAK 403 AI L+ R L+ S K Sbjct: 332 MAIASLNGYRLGDRVLQVSFKTNK 355
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 6/126 (4%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP++ T+E+L+ L +GEI +L++DK T ++ G+ FV + A+ AI L+ Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 365 KGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS 526 + +T++ S ++ L+V +PK ++++EL + G + + + + S Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGIS 165 Query: 527 RNRGFL 544 R GF+ Sbjct: 166 RGVGFI 171 Score = 45.1 bits (105), Expect = 1e-04 Identities = 29/84 (34%), Positives = 40/84 (47%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P G +F+ L D E L Q+ P G + V++++D T + KGF FVT T D A Sbjct: 272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331 Query: 332 HAIEELHDKDHKGRTLRCSLSQAK 403 AI L+ R L+ S K Sbjct: 332 MAIASLNGYRLGDRVLQVSFKTNK 355
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 55.1 bits (131), Expect = 1e-07 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 18/152 (11%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P S +FL + + T E LR+ P G+I ++ +++DK TKE+KG AFV F A Sbjct: 23 PPNSRIFLV-ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACR 81 Query: 335 AIEELHDK---DHKGRTLRCSLSQAKH-------------RLFVGNVPKGLSEEELTSII 466 A+EE+H + + + ++ ++Q++ R+FV +PK +EE+L Sbjct: 82 AMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKF 140 Query: 467 KGKGPGVVNIEMFKDLHN--PSRNRGFLFVEY 556 K G +IE + N ++G +V Y Sbjct: 141 KVYG----DIEYCSIIKNKVTGESKGLGYVRY 168 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 +P+ TEEDLR+ + G+I ++K+K T E+KG +V + A AIE Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENC----- 181 Query: 365 KGRTLRCSLSQAKHR 409 R+ R L++ K++ Sbjct: 182 -DRSFRAILAEPKNK 195
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 6/126 (4%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP++ T+E+ R L +GEI +L++DK T ++ G+ FV + A+ AI L+ Sbjct: 46 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 365 KGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS 526 + +T++ S ++ L+V +PK ++++EL + G + + + + S Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 165 Query: 527 RNRGFL 544 R GF+ Sbjct: 166 RGVGFI 171 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/78 (35%), Positives = 39/78 (50%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L D+ E L QL P G + V++++D T + KGF FVT T D A AI L Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 350 HDKDHKGRTLRCSLSQAK 403 + R L+ S K Sbjct: 352 NGYRLGDRVLQVSFKTNK 369
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 55.1 bits (131), Expect = 1e-07 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G LPR+ TE+++R L E G++ E ++K+ + FV K A+ AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 347 LHDKDHKGRTLRC----SLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKD 511 LH G + + S+A +L VGN+ + +EL + + GP V+ ++ KD Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGP-VIECDIVKD 112
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 6/126 (4%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP++ T+E+L+ L +GEI +L++DK T ++ G+ FV + A+ AI L+ Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 365 KGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS 526 + +T++ S ++ L+V +PK ++++EL + G + + + + S Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGIS 165 Query: 527 RNRGFL 544 R GF+ Sbjct: 166 RGVGFI 171 Score = 45.1 bits (105), Expect = 1e-04 Identities = 29/84 (34%), Positives = 40/84 (47%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P G +F+ L D E L Q+ P G + V++++D T + KGF FVT T D A Sbjct: 273 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 332 Query: 332 HAIEELHDKDHKGRTLRCSLSQAK 403 AI L+ R L+ S K Sbjct: 333 MAIASLNGYRLGDRVLQVSFKTNK 356
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 55.1 bits (131), Expect = 1e-07 Identities = 26/77 (33%), Positives = 47/77 (61%) Frame = +2 Query: 173 FLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELH 352 F+GGL T+ E L GEI + +++ D+ET ++GF FVTF++++ AIE ++ Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 353 DKDHKGRTLRCSLSQAK 403 K+ GR + + +Q++ Sbjct: 71 GKELDGRNITVNQAQSR 87
>DND1_BRARE (Q7T1H5) Dead end protein 1| Length = 411 Score = 54.7 bits (130), Expect = 2e-07 Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P G EVF+ +P D E+ L L + +G I+E RLM + + + +GFA+ + A Sbjct: 56 PGSGCEVFISQIPNDVYEDRLIPLFQSIGTIYEFRLMMN-FSGQTRGFAYAKYGDPLTAS 114 Query: 332 HAIEELHD-KDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNI 496 A+ LH + +G L S K +L +G++P ++E +L +++ GV ++ Sbjct: 115 AAVTTLHQYRLPEGGCLTVRRSTEKRQLRLGDLPVSMNESKLLMVLQMLSDGVEDV 170
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 54.7 bits (130), Expect = 2e-07 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G LPR+ TE+++R L E G++ E ++K+ + FV K A+ AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 347 LHDKDHKGRTLRCSLSQAKH----RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKD 511 LH G + S+ K +L VGN+ + +EL + + GP V+ ++ KD Sbjct: 55 LHHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGP-VIECDIVKD 112
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 54.7 bits (130), Expect = 2e-07 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G LPR+ TE+++R L E G++ E ++K+ + FV K A+ AI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRN 54 Query: 347 LHDKDHKGRTLRCSLSQAKH----RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKD 511 LH G + S+ K +L VGN+ + +EL + + GP V+ ++ KD Sbjct: 55 LHHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGP-VIECDIVKD 112
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 54.7 bits (130), Expect = 2e-07 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 13/143 (9%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETK--ENKGFAFVTFTAKDVAQHAI 340 ++F+G +PR +E+DLR+L E G ++E+ +++D+ ++KG FVTF + A A Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 341 EELHDKD-----HKGRTLRCSLSQAKH-----RLFVGNVPKGLSEEELTSIIKGKGPGVV 490 LH+ H ++ + S+ + +LF+G + K +E ++ + G Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG---- 132 Query: 491 NIEMFKDLHNP-SRNRGFLFVEY 556 IE + L P +RG FV + Sbjct: 133 QIEECRILRGPDGLSRGCAFVTF 155 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/84 (28%), Positives = 48/84 (57%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P+G+ +F+ LP++ ++DL Q+ P G + ++ DK+T +K F FV++ AQ Sbjct: 398 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 457 Query: 335 AIEELHDKDHKGRTLRCSLSQAKH 406 AI+ ++ + L+ L ++K+ Sbjct: 458 AIQSMNGFQIGMKRLKVQLKRSKN 481 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/62 (35%), Positives = 40/62 (64%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G + + TE D+R + G+I E R+++ + ++G AFVTFT + +AQ AI+ Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGL-SRGCAFVTFTTRTMAQTAIKA 167 Query: 347 LH 352 +H Sbjct: 168 MH 169
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 54.3 bits (129), Expect = 2e-07 Identities = 25/77 (32%), Positives = 46/77 (59%) Frame = +2 Query: 173 FLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELH 352 F+GGL T E L Q G++ + +++ D+ET ++GF FVTF+++ AIE ++ Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 353 DKDHKGRTLRCSLSQAK 403 K+ GR + + +Q++ Sbjct: 71 GKELDGRNITVNQAQSR 87
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 54.3 bits (129), Expect = 2e-07 Identities = 23/73 (31%), Positives = 46/73 (63%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G+++F+ G+ E++L+Q+ G + VR+M++ TK ++GF F++F+ + A AI Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159 Query: 341 EELHDKDHKGRTL 379 + L+ ++ GR L Sbjct: 160 DNLNSQEFYGRVL 172
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 54.3 bits (129), Expect = 2e-07 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 18/152 (11%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P S +FL + + T+E LR+ P G+I ++ +++DK TKE+KG AFV F A Sbjct: 23 PPNSRIFLV-ISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACR 81 Query: 335 AIEELHDK---DHKGRTLRCSLSQAKH-------------RLFVGNVPKGLSEEELTSII 466 A+EE+H + + ++ ++Q++ R+FV +PK +EE+L Sbjct: 82 AMEEMHGQCLGPSDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKF 140 Query: 467 KGKGPGVVNIEMFKDLHN--PSRNRGFLFVEY 556 K G +IE + N ++G +V Y Sbjct: 141 KVYG----DIEYCSIIKNKVTGESKGLGYVRY 168 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 +P+ TEEDLR+ + G+I ++K+K T E+KG +V + A AIE Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENC----- 181 Query: 365 KGRTLRCSLSQAKHRL 412 R+ R L++ K+++ Sbjct: 182 -DRSFRALLAEPKNKV 196
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 54.3 bits (129), Expect = 2e-07 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 23/156 (14%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 +G +++G LP T L ++ G + V ++ D+ T ++GFAFVT + + A+ A Sbjct: 112 EGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEA 171 Query: 338 IEELHDKDHKGRTLRCSLSQ-----------------------AKHRLFVGNVPKGLSEE 448 I GRT++ + + + H+L+V N+ L+ + Sbjct: 172 IRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQ 231 Query: 449 ELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 L + PG ++ ++ D + R+RGF F+ + Sbjct: 232 GLRDAFADQ-PGFMSAKVIYD-RSSGRSRGFGFITF 265 Score = 37.4 bits (85), Expect = 0.029 Identities = 16/79 (20%), Positives = 42/79 (53%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++++ L T + LR +++ D+ + ++GF F+TF++ + A++ Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 347 LHDKDHKGRTLRCSLSQAK 403 +++ + +GR LR +++ K Sbjct: 278 MNEVELEGRPLRLNVAGQK 296
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 54.3 bits (129), Expect = 2e-07 Identities = 46/154 (29%), Positives = 66/154 (42%), Gaps = 24/154 (15%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTF-------TAKDV 325 ++F+GGL TT+E LR GE+ + +MKDK T +++GF FV F T Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 326 AQHAIEELHDKDHKGRTLR-----------------CSLSQAKHRLFVGNVPKGLSEEEL 454 H ++ + D K T R S S +++FVG +P E EL Sbjct: 71 RPHTLDG-RNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129 Query: 455 TSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 K G V + M D R RGF F+ + Sbjct: 130 REYFKKFGV-VTEVVMIYDAEK-QRPRGFGFITF 161 Score = 46.2 bits (108), Expect = 6e-05 Identities = 21/82 (25%), Positives = 45/82 (54%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + +++F+GG+P + E +LR+ + G + EV ++ D E + +GF F+TF + A Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + +H D G+ + ++ + Sbjct: 171 V-NMHFHDIMGKKVEVKRAEPR 191
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 54.3 bits (129), Expect = 2e-07 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 13/143 (9%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETK--ENKGFAFVTFTAKDVAQHAI 340 ++F+G +PR +E+DLR+L E G ++E+ +++D+ ++KG FVTF + A A Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 341 EELHDKD-----HKGRTLRCSLSQAKH-----RLFVGNVPKGLSEEELTSIIKGKGPGVV 490 LH+ H ++ + S+ + +LF+G + K +E ++ + G Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG---- 132 Query: 491 NIEMFKDLHNP-SRNRGFLFVEY 556 IE + L P +RG FV + Sbjct: 133 QIEECRILRGPDGLSRGCAFVTF 155 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/84 (28%), Positives = 48/84 (57%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P+G+ +F+ LP++ ++DL Q+ P G + ++ DK+T +K F FV++ AQ Sbjct: 398 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 457 Query: 335 AIEELHDKDHKGRTLRCSLSQAKH 406 AI+ ++ + L+ L ++K+ Sbjct: 458 AIQSMNGFQIGMKRLKVQLKRSKN 481 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/62 (35%), Positives = 40/62 (64%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G + + TE D+R + G+I E R+++ + ++G AFVTFT + +AQ AI+ Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGL-SRGCAFVTFTTRAMAQTAIKA 167 Query: 347 LH 352 +H Sbjct: 168 MH 169
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 54.3 bits (129), Expect = 2e-07 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 23/153 (15%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTF-------TAKDV 325 ++F+GGL TT+E LR GE+ + +MKDK T +++GF FV F T Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 326 AQHAIE--ELHDKDHKGRTLRCSLSQAK--------------HRLFVGNVPKGLSEEELT 457 H ++ + K R ++ ++ K +++FVG +P E EL Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130 Query: 458 SIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 K G V + M D R RGF F+ + Sbjct: 131 EYFKKFGV-VTEVVMIYDAEK-QRPRGFGFITF 161 Score = 46.2 bits (108), Expect = 6e-05 Identities = 21/82 (25%), Positives = 45/82 (54%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + +++F+GG+P + E +LR+ + G + EV ++ D E + +GF F+TF + A Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + +H D G+ + ++ + Sbjct: 171 V-NMHFHDIMGKKVEVKRAEPR 191
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 53.5 bits (127), Expect = 4e-07 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G L +TT E++R L G+I E ++K+ F FV +K A AI+ Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKN--------FGFVHMDSKSEADEAIQN 54 Query: 347 LHDKDHKGRTLRCSLSQAK----HRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKD 511 LH G + +S+ K +L VGN+ + +EL + + GP VV ++ KD Sbjct: 55 LHHYMLNGMAMNVEMSKGKPKTSTKLHVGNISSSCTNQELRAKFEEYGP-VVECDIVKD 112
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 53.5 bits (127), Expect = 4e-07 Identities = 26/71 (36%), Positives = 43/71 (60%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +FLGGLP + TE D+ + GEI + L++DK+T ++KGF F+ + + A++ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 350 HDKDHKGRTLR 382 + KGRT+R Sbjct: 98 NGIKIKGRTIR 108
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 53.5 bits (127), Expect = 4e-07 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 27/157 (17%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G L L +L E G + V ++ DK T ++GF FVT ++K+ + A ++ Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 347 LHDKDHKGRTLRCSLS---------------------------QAKHRLFVGNVPKGLSE 445 + + GR LR + + +R++VGN+ G+ + Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQ 207 Query: 446 EELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 + L ++ +G VV+ ++ D + R+RGF FV Y Sbjct: 208 DALETLFSEQGK-VVDAKVVYD-RDSGRSRGFGFVTY 242 Score = 49.7 bits (117), Expect = 6e-06 Identities = 22/80 (27%), Positives = 47/80 (58%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++G L ++ L L G++ + +++ D+++ ++GF FVT+++ + +AIE Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 253 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 L D GR +R S ++A+ Sbjct: 254 SLDGVDLNGRAIRVSPAEAR 273
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 53.1 bits (126), Expect = 5e-07 Identities = 34/140 (24%), Positives = 70/140 (50%), Gaps = 7/140 (5%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q + +++GGL +E L +L G + V + KD+ T ++GF FV F ++ A +A Sbjct: 11 QDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYA 70 Query: 338 IEELHDKDHKGRTLRCSLSQAKHR-------LFVGNVPKGLSEEELTSIIKGKGPGVVNI 496 I+ L+ G+ ++ + + A + +FVGN+ + E+ L G + Sbjct: 71 IKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVP 130 Query: 497 EMFKDLHNPSRNRGFLFVEY 556 ++ +D+ + ++GF F+ + Sbjct: 131 KIMRDV-DSGTSKGFAFINF 149 Score = 39.7 bits (91), Expect = 0.006 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEV-RLMKDKETKENKGFAFVTFTAKDVAQHA 337 G+ +F+G L + E+ L G I +V ++M+D ++ +KGFAF+ F + + + A Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158 Query: 338 IEELH 352 +E ++ Sbjct: 159 LEAMN 163
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 53.1 bits (126), Expect = 5e-07 Identities = 26/72 (36%), Positives = 44/72 (61%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +T E+ L G I EV ++KD+ET+ ++GF F+TFT + A A+ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 347 LHDKDHKGRTLR 382 ++ + GR +R Sbjct: 67 MNGESLDGRQIR 78
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 53.1 bits (126), Expect = 5e-07 Identities = 27/87 (31%), Positives = 48/87 (55%) Frame = +2 Query: 143 LALPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD 322 +A P F+GGL T E L GE+ + +++ D+ET ++GF FVTF + Sbjct: 1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60 Query: 323 VAQHAIEELHDKDHKGRTLRCSLSQAK 403 + AIE ++ +D GR++ + +Q++ Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQSR 87
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 53.1 bits (126), Expect = 5e-07 Identities = 30/126 (23%), Positives = 66/126 (52%), Gaps = 6/126 (4%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP++ T+++ + L +G+I +L++DK T ++ G+ FV ++ + A AI L+ Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105 Query: 365 KGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS 526 + +T++ S ++ L+V +PK +S++E+ + G + + + + S Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVS 165 Query: 527 RNRGFL 544 R GF+ Sbjct: 166 RGVGFI 171 Score = 43.5 bits (101), Expect = 4e-04 Identities = 27/78 (34%), Positives = 39/78 (50%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L + E L QL P G + V++++D T + KGF FVT T D A AI L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 350 HDKDHKGRTLRCSLSQAK 403 + R L+ S +K Sbjct: 346 NGYRLGERVLQVSFKTSK 363
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 53.1 bits (126), Expect = 5e-07 Identities = 24/76 (31%), Positives = 49/76 (64%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++GGL + ++ L P G+I ++++ D ET++++GFAFV F + A AI+ + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 350 HDKDHKGRTLRCSLSQ 397 ++ + GRT+R +L++ Sbjct: 68 NESELFGRTIRVNLAK 83
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 53.1 bits (126), Expect = 5e-07 Identities = 24/76 (31%), Positives = 49/76 (64%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++GGL + ++ L P G+I ++++ D ET++++GFAFV F + A AI+ + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 350 HDKDHKGRTLRCSLSQ 397 ++ + GRT+R +L++ Sbjct: 68 NESELFGRTIRVNLAK 83
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 53.1 bits (126), Expect = 5e-07 Identities = 26/81 (32%), Positives = 46/81 (56%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G+ V++G L + L L G++ E R++ D+++ +KGF FVT+ + Q+AI Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262 Query: 341 EELHDKDHKGRTLRCSLSQAK 403 + L D GR +R S ++A+ Sbjct: 263 KSLDGADLDGRQIRVSEAEAR 283 Score = 50.4 bits (119), Expect = 3e-06 Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 33/163 (20%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G LP + L QL E G + V ++ DK T ++GF FVT ++ + A ++ Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151 Query: 347 LHDKDHKGRTLRC---------------------------------SLSQAKHRLFVGNV 427 + + GR LR S + + +R++VGN+ Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211 Query: 428 PKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G+ + L S+ +G VV + D + R++GF FV Y Sbjct: 212 SWGVDDMALESLFSEQGK-VVEARVIYD-RDSGRSKGFGFVTY 252
>DND1_XENLA (Q6DCB7) Dead end protein homolog 1| Length = 371 Score = 52.8 bits (125), Expect = 7e-07 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Frame = +2 Query: 152 PPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQ 331 P GSEVF+G +P+D E+ L L + +G+++E RLM + N+GFA+ + ++ A Sbjct: 73 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMM-TFSGLNRGFAYARYISRRQAI 131 Query: 332 HAIEELHDKD-HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 502 AI L+ + KG + S K L + +P E L +++ GV +I + Sbjct: 132 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISL 189
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 52.8 bits (125), Expect = 7e-07 Identities = 35/149 (23%), Positives = 73/149 (48%), Gaps = 20/149 (13%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G +PR+ ++LR + E G I +M DK + ++ F FVT + A IE+L Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKL 145 Query: 350 HDKDHKGRTLRCSLS--------------------QAKHRLFVGNVPKGLSEEELTSIIK 469 +D + GR ++ +++ ++ +++++GN+ K ++ E L Sbjct: 146 NDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFS 205 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 KG V+ ++ + S++ GF FV + Sbjct: 206 EKGK-VLGAKV-QRTPGTSKSNGFGFVSF 232 Score = 34.7 bits (78), Expect = 0.19 Identities = 16/50 (32%), Positives = 28/50 (56%) Frame = +2 Query: 395 QAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFL 544 + RL+VGN+P+ L+ +EL +I++ G + M+ SR GF+ Sbjct: 81 EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFV 130
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 52.8 bits (125), Expect = 7e-07 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +FL + TE+D R+L P GE+ EV + D T ++KGFA+V F D A A EL Sbjct: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391 Query: 350 HDKDHKGRTLRCSLSQAK--HRL 412 + +GR L + AK H+L Sbjct: 392 DKQIFQGRLLHILPADAKKSHKL 414 Score = 39.3 bits (90), Expect = 0.008 Identities = 23/71 (32%), Positives = 39/71 (54%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++ + LP + T +D+ +L G++ VR+ K K K +GFAFV F A++A+++ Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPK-KFDKSARGFAFVEFLLPKEAENAMDQ 811 Query: 347 LHDKDHKGRTL 379 L GR L Sbjct: 812 LQGVHLLGRRL 822
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 52.8 bits (125), Expect = 7e-07 Identities = 35/138 (25%), Positives = 69/138 (50%), Gaps = 6/138 (4%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G+ + + LP+D + +L L +G I R+M+D +T + G+ FV F ++ A AI Sbjct: 77 GTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAI 136 Query: 341 EELHDKDHKGRTLRCSLSQ------AKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 502 L+ + + ++ S ++ L+V N+ + +++E+L +I GK +V + Sbjct: 137 NNLNGITVRNKRIKVSFARPGGEQLRDTNLYVTNLSRSITDEQLETIF-GKYGQIVQKNI 195 Query: 503 FKDLHNPSRNRGFLFVEY 556 +D H RG F+ + Sbjct: 196 LRDKHT-GTPRGVAFIRF 212 Score = 43.5 bits (101), Expect = 4e-04 Identities = 21/71 (29%), Positives = 39/71 (54%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ L R T+E L + G+I + +++DK T +G AF+ F ++ AQ AI Sbjct: 164 TNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 223 Query: 344 ELHDKDHKGRT 376 L++ +G T Sbjct: 224 ALNNVIPEGGT 234
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 52.8 bits (125), Expect = 7e-07 Identities = 30/126 (23%), Positives = 65/126 (51%), Gaps = 6/126 (4%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP++ T+++ + L +G+I +L++DK T ++ G+ FV ++ + A AI L+ Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105 Query: 365 KGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS 526 + +T++ S ++ L+V +PK +S++E+ + G + + + S Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVS 165 Query: 527 RNRGFL 544 R GF+ Sbjct: 166 RGVGFI 171 Score = 43.5 bits (101), Expect = 4e-04 Identities = 27/78 (34%), Positives = 39/78 (50%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L + E L QL P G + V++++D T + KGF FVT T D A AI L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 350 HDKDHKGRTLRCSLSQAK 403 + R L+ S +K Sbjct: 346 NGYRLGERVLQVSFKTSK 363
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 52.8 bits (125), Expect = 7e-07 Identities = 27/74 (36%), Positives = 44/74 (59%) Frame = +2 Query: 176 LGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHD 355 + L TT DLR+ E G+I +V + +DK ++++KGF FV F + A+HA++ Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82 Query: 356 KDHKGRTLRCSLSQ 397 K GR LR +L++ Sbjct: 83 KLVDGRELRVTLAK 96
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 52.8 bits (125), Expect = 7e-07 Identities = 25/77 (32%), Positives = 46/77 (59%) Frame = +2 Query: 173 FLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELH 352 F+GGL T +E L Q G+I + +++ D+ET ++GF FVTF + + AIE ++ Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 353 DKDHKGRTLRCSLSQAK 403 ++ GR + + +Q++ Sbjct: 69 GQELDGRNITVNEAQSR 85
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 52.8 bits (125), Expect = 7e-07 Identities = 25/71 (35%), Positives = 43/71 (60%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+GGLP + TE D+ + GEI + L++DK+T ++KGF F+ + + A++ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 350 HDKDHKGRTLR 382 + KGRT+R Sbjct: 98 NGIKIKGRTIR 108
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 52.8 bits (125), Expect = 7e-07 Identities = 33/131 (25%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTF-TAKDVAQHAIEELHDKD 361 LP++ T+E+LR L +GE+ +L++DK + G+ FV + TAKD A+ AI L+ Sbjct: 27 LPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD-AERAISTLNGLR 85 Query: 362 HKGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNP 523 + +T++ S ++ L++ +P+ ++++++ + G ++N + D Sbjct: 86 LQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFG-RIINSRVLVD-QTT 143 Query: 524 SRNRGFLFVEY 556 +RG F+ + Sbjct: 144 GLSRGVAFIRF 154 Score = 43.5 bits (101), Expect = 4e-04 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 1/126 (0%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ GLPR T++D+ + G I R++ D+ T ++G AF+ F + A+ AI Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165 Query: 344 ELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDL-HN 520 F+G+ P G S E +T N+ + L H+ Sbjct: 166 S----------------------FIGHKPPG-SSEPITVKFAANPNQNKNMALLSQLYHS 202 Query: 521 PSRNRG 538 P+R G Sbjct: 203 PARRFG 208 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/61 (34%), Positives = 34/61 (55%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L +D E L Q+ P G + V++++D T + KGF FVT T + + AI L Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305 Query: 350 H 352 + Sbjct: 306 N 306
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 52.4 bits (124), Expect = 9e-07 Identities = 25/57 (43%), Positives = 37/57 (64%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHD 355 LP++ E++LR L +G + + + +DK T KGFAFVTF ++D A AI EL+D Sbjct: 183 LPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 52.4 bits (124), Expect = 9e-07 Identities = 27/78 (34%), Positives = 47/78 (60%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G L + T ED++ P G I + R++KD T ++KG+ FV+F K A++AI+++ Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 350 HDKDHKGRTLRCSLSQAK 403 + GR +R + + K Sbjct: 168 GGQWLGGRQIRTNWATRK 185 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/77 (32%), Positives = 42/77 (54%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P V+ GG+ TE+ +RQ P G+I E+R+ D KG++FV F++ + A H Sbjct: 211 PNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAH 264 Query: 335 AIEELHDKDHKGRTLRC 385 AI ++ +G ++C Sbjct: 265 AIVSVNGTTIEGHVVKC 281
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 52.4 bits (124), Expect = 9e-07 Identities = 26/72 (36%), Positives = 44/72 (61%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL +T E+ L G I EV ++KD+ET+ ++GF F+TFT + A A+ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 347 LHDKDHKGRTLR 382 ++ + GR +R Sbjct: 67 MNGESLDGRQIR 78
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 52.0 bits (123), Expect = 1e-06 Identities = 30/83 (36%), Positives = 53/83 (63%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL R+T E+ L+ + G I EV L+KD+ T +++GFAF+TF A++A ++ Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 347 LHDKDHKGRTLRCSLSQAKHRLF 415 ++ K G+ ++ + QAK F Sbjct: 68 MNGKSLHGKAIK--VEQAKKPSF 88
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/73 (42%), Positives = 38/73 (52%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 L DT EE+LR L G I V L KDKET KGFAFV++ +D A A + L Sbjct: 209 LSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGW 268 Query: 365 KGRTLRCSLSQAK 403 LRC S+ + Sbjct: 269 NNLILRCEFSKPR 281
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 52.0 bits (123), Expect = 1e-06 Identities = 24/73 (32%), Positives = 42/73 (57%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 +++F+GGL T + LR G++ + +++ D+ET ++GF FV F + A AI Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94 Query: 344 ELHDKDHKGRTLR 382 E+ K+ GR +R Sbjct: 95 EMDGKELNGRHIR 107
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 52.0 bits (123), Expect = 1e-06 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 24/154 (15%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTF-------TAKDV 325 ++F+GGL TT+E LR GE+ + +MKDK T +++GF FV F T Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 326 AQHAIE--ELHDKDHKGRTLRCSLSQAK---------------HRLFVGNVPKGLSEEEL 454 H ++ + K R ++ S+ + +++FVG +P E EL Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETEL 130 Query: 455 TSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G V + M D R RGF F+ + Sbjct: 131 KEYFNRFGV-VTEVVMIYDAEK-QRPRGFGFITF 162 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/82 (24%), Positives = 44/82 (53%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + +++F+GG+P + E +L++ G + EV ++ D E + +GF F+TF + A Sbjct: 112 RSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 171 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + +H D G+ + ++ + Sbjct: 172 V-NMHFHDIMGKKVEVKRAEPR 192
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/87 (29%), Positives = 48/87 (55%) Frame = +2 Query: 143 LALPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD 322 +A P F+GGL T + L GE+ + +++ D+ET ++GF FVTF + Sbjct: 1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60 Query: 323 VAQHAIEELHDKDHKGRTLRCSLSQAK 403 + AIE ++ +D GR++ + +Q++ Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQSR 87
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 51.6 bits (122), Expect = 1e-06 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 8/139 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L +D TE L + P G I +R+ +D T+ + G+A+V F A+ A++ Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 ++ KGR +R SQ L F+ N+ K + + L G NI Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG----NIL 126 Query: 500 MFKDLHNPSRNRGFLFVEY 556 K + + + ++G+ FV + Sbjct: 127 SCKVVCDENGSKGYGFVHF 145 Score = 46.6 bits (109), Expect = 5e-05 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 24/153 (15%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++ D +E L+++ G V++M D K +KGF FV+F + AQ A++ Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGK-SKGFGFVSFERHEDAQKAVD 249 Query: 344 ELHDKDHKGRTLRCSLSQAK------------------------HRLFVGNVPKGLSEEE 451 E++ KD G+++ +Q K L+V N+ G+ +E Sbjct: 250 EMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309 Query: 452 LTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFV 550 L G I K + R++GF FV Sbjct: 310 LRKEFLPFG----TITSAKVMMEGGRSKGFGFV 338 Score = 37.4 bits (85), Expect = 0.029 Identities = 24/82 (29%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 QG +++ L +E LR+ P G I ++M E +KGF FV F++ + A A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + E++ + + L +L+Q K Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 51.6 bits (122), Expect = 1e-06 Identities = 27/78 (34%), Positives = 46/78 (58%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G L T ED++ P G I + R++KD T ++KG+ FV+F K A++AI+++ Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 350 HDKDHKGRTLRCSLSQAK 403 + GR +R + + K Sbjct: 168 GGQWLGGRQIRTNWATRK 185 Score = 50.8 bits (120), Expect = 3e-06 Identities = 25/77 (32%), Positives = 41/77 (53%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P V+ GG+ TE+ +RQ P G+I E+R+ D KG++FV F + + A H Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAH 264 Query: 335 AIEELHDKDHKGRTLRC 385 AI ++ +G ++C Sbjct: 265 AIVSVNGTTIEGHVVKC 281
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 51.6 bits (122), Expect = 1e-06 Identities = 32/143 (22%), Positives = 70/143 (48%), Gaps = 19/143 (13%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDK-------------ETKENKGFAFVTFTAKDV 325 LP+ TE+++R L +GEI V+L++DK ++ G+ FV + Sbjct: 156 LPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQD 215 Query: 326 AQHAIEELHDKDHKGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGV 487 A+ A+ L+ + +T++ S ++ L+V +PK ++++EL +I G + Sbjct: 216 AEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFG-AI 274 Query: 488 VNIEMFKDLHNPSRNRGFLFVEY 556 + + ++ N ++ +G F+ + Sbjct: 275 ITSRILQNAGNDTQTKGVGFIRF 297 Score = 47.0 bits (110), Expect = 4e-05 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = +2 Query: 143 LALPPQGS-EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAK 319 LA P G+ +F+ L +T E L QL P G + V+++KD T + KG+ FV+ T Sbjct: 394 LASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNY 453 Query: 320 DVAQHAIEELHDKDHKGRTLRCSLSQAK 403 D A AI L+ R L+ S K Sbjct: 454 DEAAMAIRALNGYTMGNRVLQVSFKTNK 481 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDK-ETKENKGFAFVTFTAKDVAQH 334 +G+ +++ GLP+ T+++L + P G I R++++ + KG F+ F ++ A Sbjct: 246 KGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATR 305 Query: 335 AIEELH 352 AI L+ Sbjct: 306 AIIALN 311
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 51.6 bits (122), Expect = 1e-06 Identities = 32/143 (22%), Positives = 70/143 (48%), Gaps = 19/143 (13%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDK-------------ETKENKGFAFVTFTAKDV 325 LP+ TE+++R L +GEI V+L++DK ++ G+ FV + Sbjct: 192 LPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQD 251 Query: 326 AQHAIEELHDKDHKGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGV 487 A+ A+ L+ + +T++ S ++ L+V +PK ++++EL +I G + Sbjct: 252 AEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFG-AI 310 Query: 488 VNIEMFKDLHNPSRNRGFLFVEY 556 + + ++ N ++ +G F+ + Sbjct: 311 ITSRILQNAGNDTQTKGVGFIRF 333 Score = 47.0 bits (110), Expect = 4e-05 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = +2 Query: 143 LALPPQGS-EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAK 319 LA P G+ +F+ L +T E L QL P G + V+++KD T + KG+ FV+ T Sbjct: 430 LASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNY 489 Query: 320 DVAQHAIEELHDKDHKGRTLRCSLSQAK 403 D A AI L+ R L+ S K Sbjct: 490 DEAAMAIRALNGYTMGNRVLQVSFKTNK 517 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDK-ETKENKGFAFVTFTAKDVAQH 334 +G+ +++ GLP+ T+++L + P G I R++++ + KG F+ F ++ A Sbjct: 282 KGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATR 341 Query: 335 AIEELH 352 AI L+ Sbjct: 342 AIIALN 347
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 51.6 bits (122), Expect = 1e-06 Identities = 32/131 (24%), Positives = 70/131 (53%), Gaps = 7/131 (5%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTF-TAKDVAQHAIEELHDKD 361 LP++ T+++LR L +GE+ +L++DK + G+ FV + TAKD A+ AI L+ Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD-AERAINTLNGLR 85 Query: 362 HKGRTLRCSLSQAKH------RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNP 523 + +T++ S ++ L++ +P+ ++++++ + G ++N + D Sbjct: 86 LQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFG-RIINSRVLVD-QTT 143 Query: 524 SRNRGFLFVEY 556 +RG F+ + Sbjct: 144 GLSRGVAFIRF 154 Score = 42.4 bits (98), Expect = 9e-04 Identities = 18/59 (30%), Positives = 34/59 (57%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 + +++ GLPR T++D+ + G I R++ D+ T ++G AF+ F + A+ AI Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/61 (36%), Positives = 34/61 (55%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L +D E L Q+ P G + V++++D T + KGF FVT T + A AI L Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 350 H 352 + Sbjct: 306 N 306
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/81 (30%), Positives = 45/81 (55%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G+ +++G L + L L G++ E R++ D+++ +KGF FVT ++ Q AI Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315 Query: 341 EELHDKDHKGRTLRCSLSQAK 403 L+ D GR +R S ++A+ Sbjct: 316 NSLNGADLDGRQIRVSEAEAR 336 Score = 42.7 bits (99), Expect = 7e-04 Identities = 22/72 (30%), Positives = 38/72 (52%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G L + L QL E G + V ++ DK T ++GF FVT + + A ++ Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 347 LHDKDHKGRTLR 382 + + +GR LR Sbjct: 160 FNGYEFEGRPLR 171
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 51.2 bits (121), Expect = 2e-06 Identities = 35/108 (32%), Positives = 51/108 (47%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q +F+G LP D TE++ ++L GE EV + K KGF F+ ++ +A+ A Sbjct: 295 QRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINK------GKGFGFIKLESRALAEIA 348 Query: 338 IEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGP 481 EL D +GR LR + L V N+ +S E L GP Sbjct: 349 KAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGP 396
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 51.2 bits (121), Expect = 2e-06 Identities = 35/108 (32%), Positives = 51/108 (47%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q +F+G LP D TE++ ++L GE EV + K KGF F+ ++ +A+ A Sbjct: 287 QRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINK------GKGFGFIKLESRALAEIA 340 Query: 338 IEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGP 481 EL D +GR LR + L V N+ +S E L GP Sbjct: 341 KAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGP 388
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/80 (33%), Positives = 42/80 (52%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 S +F+ LP D +E DL + G+I E+ + D + +KGFA+V + D A A + Sbjct: 301 SRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYK 360 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 EL K +GR + + AK Sbjct: 361 ELDGKHFQGRLMHILPATAK 380
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/78 (34%), Positives = 39/78 (50%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 V+LG LP +E + C G+I RL + K T +KG+AFV F ++DVA+ E + Sbjct: 49 VYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 108 Query: 350 HDKDHKGRTLRCSLSQAK 403 + R L C K Sbjct: 109 DNYLFGERLLSCKFMPRK 126
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 50.8 bits (120), Expect = 3e-06 Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 8/138 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L +E L + P+G + +R+ +D TK + G+A+V F + + AIE Sbjct: 37 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 96 Query: 344 ELHDKDHKGRTLRCSLSQ--------AKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 +L+ KGR R SQ +F+ N+ + + L G +++ + Sbjct: 97 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG-DILSSK 155 Query: 500 MFKDLHNPSRNRGFLFVE 553 + D + S+ GF+ E Sbjct: 156 IATDENGKSKGFGFVHFE 173 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/81 (29%), Positives = 41/81 (50%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++ + +TT+E ++L G I L KD + K KGF FV + + A A+E Sbjct: 218 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVE 276 Query: 344 ELHDKDHKGRTLRCSLSQAKH 406 L+D + G L +Q K+ Sbjct: 277 ALNDSELNGEKLYVGRAQKKN 297 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/82 (30%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 QG +F+ L +E L + P G I ++M+ + K +KGF FV F+ + A A Sbjct: 319 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK-SKGFGFVCFSTPEEATKA 377 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 I E + + G+ L +++Q K Sbjct: 378 ITEKNQQIVAGKPLYVAIAQRK 399 Score = 39.7 bits (91), Expect = 0.006 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 15/152 (9%) Frame = +2 Query: 146 ALPPQGS-EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD 322 +L +GS +F+ L D + L G+I ++ D+ K +KGF FV F + Sbjct: 118 SLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVHFEEEG 176 Query: 323 VAQHAI----------EELHDKDHKGRTLRCS-LSQAK---HRLFVGNVPKGLSEEELTS 460 A+ AI +E++ H R R S L + K L+V N+ ++E+ Sbjct: 177 AAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQE 236 Query: 461 IIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 + GP +V+ + KD + +GF FV Y Sbjct: 237 LFAKFGP-IVSASLEKDA--DGKLKGFGFVNY 265
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 8/139 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L D TE L + P G + +R+ +D T+ + G+A+V F A+ A++ Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 ++ KG+ +R SQ L F+ N+ K + + L G NI Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG----NIL 126 Query: 500 MFKDLHNPSRNRGFLFVEY 556 K + + + ++G+ FV + Sbjct: 127 SCKVVCDENGSKGYAFVHF 145 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/80 (27%), Positives = 44/80 (55%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++ + +E L++L G+ V++M+D K +KGF FV++ + A A+E Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKAVE 249 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 E++ K+ G+ + +Q K Sbjct: 250 EMNGKEISGKIIFVGRAQKK 269 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/82 (29%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 QG +++ L +E LR+ P G I ++M E +KGF FV F++ + A A Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + E++ + + L +L+Q K Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371 Score = 33.9 bits (76), Expect = 0.32 Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 15/143 (10%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+ L + + L G I +++ D+ +KG+AFV F ++ A AIE++ Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158 Query: 350 HD-------------KDHKGRTLRCSLSQAKH--RLFVGNVPKGLSEEELTSIIKGKGPG 484 + K K R ++AK +++ N + + +E L + G Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELG-AKAKEFTNVYIKNFGEEVDDESLKELFSQFGK- 216 Query: 485 VVNIEMFKDLHNPSRNRGFLFVE 553 +++++ +D + S+ GF+ E Sbjct: 217 TLSVKVMRDPNGKSKGFGFVSYE 239
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/78 (34%), Positives = 46/78 (58%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G L + T ED++ P G+I + R++KD T ++KG+ FV+F K A++AI + Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175 Query: 350 HDKDHKGRTLRCSLSQAK 403 + GR +R + + K Sbjct: 176 GGQWLGGRQIRTNWATRK 193 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/77 (29%), Positives = 42/77 (54%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P+ V+ GG+ T++ +RQ P G+I E+R+ + KG++FV F+ + A H Sbjct: 219 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAH 272 Query: 335 AIEELHDKDHKGRTLRC 385 AI ++ +G ++C Sbjct: 273 AIVSVNGTTIEGHVVKC 289
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 50.8 bits (120), Expect = 3e-06 Identities = 29/92 (31%), Positives = 47/92 (51%) Frame = +2 Query: 143 LALPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD 322 + L + +FL L E+DL+ L P G++ +V + DK+T KGFA++ F D Sbjct: 316 IQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDAD 375 Query: 323 VAQHAIEELHDKDHKGRTLRCSLSQAKHRLFV 418 A A EL K +GR L ++A+ + + Sbjct: 376 DAVRAYLELDAKPFQGRLLHVLPAKARSSILL 407
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +F+ P D E +L ++ P G + EV+++ GFAFV F + A AIE Sbjct: 125 TRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN--------GFAFVEFEEAESAAKAIE 176 Query: 344 ELHDKDHKGRTLR---CSLSQAKHRLFVGNVPKGLSEEELTSIIK 469 E+H K + L L ++R+ + N+P+G S ++L + + Sbjct: 177 EVHGKSFANQPLEVVYSKLPAKRYRITMKNLPEGCSWQDLKDLAR 221
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/78 (34%), Positives = 46/78 (58%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G L + T ED++ P G+I + R++KD T ++KG+ FV+F K A++AI + Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158 Query: 350 HDKDHKGRTLRCSLSQAK 403 + GR +R + + K Sbjct: 159 GGQWLGGRQIRTNWATRK 176 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/77 (29%), Positives = 42/77 (54%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P+ V+ GG+ T++ +RQ P G+I E+R+ + KG++FV F+ + A H Sbjct: 202 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAH 255 Query: 335 AIEELHDKDHKGRTLRC 385 AI ++ +G ++C Sbjct: 256 AIVSVNGTTIEGHVVKC 272
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 50.8 bits (120), Expect = 3e-06 Identities = 40/139 (28%), Positives = 76/139 (54%), Gaps = 9/139 (6%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DT+++DL+ GE+ + + D T ++GF F+ F KD A ++E+ Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF--KDAA--SVEK 124 Query: 347 LHD-KDHK--GRTLRCSLSQAK-----HRLFVGNV-PKGLSEEELTSIIKGKGPGVVNIE 499 + D K+H+ GR + + A ++FVG + P+ +EE++ G+ + IE Sbjct: 125 VLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYF-GEFGEIEAIE 183 Query: 500 MFKDLHNPSRNRGFLFVEY 556 + D ++ RGF+F+ + Sbjct: 184 LPMD-PKLNKRRGFVFITF 201 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Frame = +2 Query: 167 EVFLGGL-PRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 ++F+GGL P TEE +R+ GEI + L D + + +GF F+TF ++ + +E Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 + K H +C + A+ Sbjct: 213 K---KFHTVSGSKCEIKVAQ 229
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 50.8 bits (120), Expect = 3e-06 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q +FL + + EED R+L P GE+ EV + D T ++KGFA+V F A +A Sbjct: 343 QTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNA 402 Query: 338 IEELHDKDHKGRTLRCSLSQAK--HRL 412 EL + +GR L + K HRL Sbjct: 403 YVELDKQIFQGRLLHILPGEEKKSHRL 429 Score = 42.7 bits (99), Expect = 7e-04 Identities = 24/74 (32%), Positives = 41/74 (55%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + ++ + LP + T +D+ +L G++ VR+ K K K +GFAFV F A++A Sbjct: 761 KSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPK-KFDKSARGFAFVEFLLPKEAENA 819 Query: 338 IEELHDKDHKGRTL 379 +++LH GR L Sbjct: 820 MDQLHGVHLLGRRL 833
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 50.4 bits (119), Expect = 3e-06 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 8/138 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L D TE L + P G I +R+ +D T + +A+V F A+HA++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 ++ KG+ +R SQ L FV N+ K ++ + L + G +++ Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129 Query: 500 MFKDLHNPSRNRGFLFVE 553 + D N S+ GF+ E Sbjct: 130 VVCD-ENGSKGYGFVHFE 146 Score = 47.4 bits (111), Expect = 3e-05 Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 24/151 (15%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 V++ D +E L+ L G V++M D E+ ++KGF FV+F + AQ A++E+ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 350 HDKDHKGRTLRCSLSQAK------------------------HRLFVGNVPKGLSEEELT 457 + K+ G+ + +Q K L+V N+ G+ +E L Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311 Query: 458 SIIKGKGPGVVNIEMFKDLHNPSRNRGFLFV 550 G I K + R++GF FV Sbjct: 312 KAFSPFG----TITSAKVMMEGGRSKGFGFV 338 Score = 35.8 bits (81), Expect = 0.084 Identities = 22/78 (28%), Positives = 40/78 (51%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++ L +E LR+ P G I ++M E +KGF FV F++ + A A+ E+ Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 350 HDKDHKGRTLRCSLSQAK 403 + + + L +L+Q K Sbjct: 354 NGRIVATKPLYVALAQRK 371
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 50.4 bits (119), Expect = 3e-06 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 24/151 (15%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++ L TT++DL+ G+I +MKD E K +KGF FV F D A A+E Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVE 273 Query: 344 ELH-----DKD-HKGRTLRCSLSQAKHR------------------LFVGNVPKGLSEEE 451 L+ DK+ + GR + S + + R L+V N+ +S+E+ Sbjct: 274 SLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEK 333 Query: 452 LTSIIKGKGPGVVNIEMFKDLHNPSRNRGFL 544 L I G V + ++ +D + S+ GF+ Sbjct: 334 LKEIFSPFGT-VTSSKVMRDPNGTSKGSGFV 363 Score = 39.3 bits (90), Expect = 0.008 Identities = 21/82 (25%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q S +++ L ++E L+++ P G + ++M+D +KG FV F + A A Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEA 374 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + +L K + + L +++Q K Sbjct: 375 MSQLSGKMIESKPLYVAIAQRK 396 Score = 32.0 bits (71), Expect = 1.2 Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 12/140 (8%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE- 346 +F+ L + L G I ++ D + ++KG+ FV + ++ AQ AIE+ Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184 Query: 347 ----LHDKD-HKGRTLR-----CSLSQAKH-RLFVGNVPKGLSEEELTSIIKGKGPGVVN 493 L+DK + G LR + ++ K ++V N+ + ++++L + G+ + + Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF-GEYGKITS 243 Query: 494 IEMFKDLHNPSRNRGFLFVE 553 + KD S+ GF+ E Sbjct: 244 AVVMKDGEGKSKGFGFVNFE 263
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 50.4 bits (119), Expect = 3e-06 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 8/138 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L D TE L + P G I +R+ +D T+ + G+A++ F A+ A++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 ++ + KGR +R SQ L F+ N+ + + + L G +++ + Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFG-NILSCK 129 Query: 500 MFKDLHNPSRNRGFLFVE 553 + D H SR GF+ E Sbjct: 130 VVCDEHG-SRGYGFVHFE 146 Score = 37.4 bits (85), Expect = 0.029 Identities = 23/82 (28%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 QG +++ L ++ LR+ P G I ++M E +KGF FV F++ + A A Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + E++ + + L +L+Q K Sbjct: 350 VTEMNGRIVSTKPLYVALAQRK 371
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 50.1 bits (118), Expect = 4e-06 Identities = 31/140 (22%), Positives = 71/140 (50%), Gaps = 7/140 (5%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q + V++GGL +E L +L G + + KD+ T +++G+ FV F +++ A +A Sbjct: 11 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70 Query: 338 IEELHDKDHKGRTLRCSLSQAKHR-------LFVGNVPKGLSEEELTSIIKGKGPGVVNI 496 I+ ++ G+ +R + + A ++ +F+GN+ + E+ L G + Sbjct: 71 IKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130 Query: 497 EMFKDLHNPSRNRGFLFVEY 556 ++ +D + ++G+ F+ + Sbjct: 131 KIMRD-PDTGNSKGYAFINF 149 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEV-RLMKDKETKENKGFAFVTFTAKDVAQHA 337 G+ +F+G L + E+ L G I + ++M+D +T +KG+AF+ F + D + A Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158 Query: 338 IEELH 352 IE ++ Sbjct: 159 IEAMN 163
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/52 (46%), Positives = 33/52 (63%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 L DT E DL++L P G I + L KDK T ++KGFAF++F ++ A AI Sbjct: 246 LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/52 (46%), Positives = 33/52 (63%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 L DT E DL++L P G I + L KDK T ++KGFAF++F ++ A AI Sbjct: 246 LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/74 (36%), Positives = 42/74 (56%) Frame = +2 Query: 182 GLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKD 361 GL TTE DLR++ G I +V ++ D++++ ++GFAFV F D A+ A E + + Sbjct: 124 GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 183 Query: 362 HKGRTLRCSLSQAK 403 GR +R S K Sbjct: 184 LDGRRIRVDFSITK 197
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/74 (36%), Positives = 42/74 (56%) Frame = +2 Query: 182 GLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKD 361 GL TTE DLR++ G I +V ++ D++++ ++GFAFV F D A+ A E + + Sbjct: 124 GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 183 Query: 362 HKGRTLRCSLSQAK 403 GR +R S K Sbjct: 184 LDGRRIRVDFSITK 197
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/74 (36%), Positives = 42/74 (56%) Frame = +2 Query: 182 GLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKD 361 GL TTE DLR++ G I +V ++ D++++ ++GFAFV F D A+ A E + + Sbjct: 124 GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 183 Query: 362 HKGRTLRCSLSQAK 403 GR +R S K Sbjct: 184 LDGRRIRVDFSITK 197
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 49.7 bits (117), Expect = 6e-06 Identities = 29/82 (35%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + +F+ LP +TEEDL +L G + E+ D TK+ KGFAF+TF + A A Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 E+ + +GR L S K Sbjct: 460 YSEVDGQVFQGRMLHVLPSTIK 481 Score = 35.8 bits (81), Expect = 0.084 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKE-TKENKGFAFVTFTAKDVAQHAI 340 S++ + +P ++R+L GE+ VRL K T ++GF FV F K A+ A Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891 Query: 341 EELHDKDH 364 L H Sbjct: 892 NALCHSTH 899
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 49.7 bits (117), Expect = 6e-06 Identities = 23/77 (29%), Positives = 45/77 (58%) Frame = +2 Query: 173 FLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELH 352 F+GGL T + L G++ + +++ D+ET ++GF FVTF + + AIE ++ Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 353 DKDHKGRTLRCSLSQAK 403 +D GR++ + +Q++ Sbjct: 71 GQDLDGRSITVNEAQSR 87
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 49.7 bits (117), Expect = 6e-06 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G LPR E L+ E G++ +R+ + K+T +KG+ FV F +VA+ E + Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 350 HDKDHKGRTLRCSL---SQAKHRLFVGNV 427 ++ R ++C + + +LFVG++ Sbjct: 107 NNYLMGERIIKCHVIPPEKVHEKLFVGSI 135
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 49.3 bits (116), Expect = 7e-06 Identities = 29/82 (35%), Positives = 46/82 (56%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q +F+ GL DTTEE LR+ E G I R++ D++T +KGF FV F++ + A+ A Sbjct: 551 QSKTLFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 E + D + G + ++ K Sbjct: 608 KEAMEDGEIDGNKVTLDFAKPK 629 Score = 45.8 bits (107), Expect = 8e-05 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 14/143 (9%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ LP TE++++ + E EVRL+ +KE +KG A++ F + A+ A+EE Sbjct: 373 LFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGS-SKGMAYIEFKTEAEAEKALEEK 428 Query: 350 HDKDHKGRTLRCSLSQAKHR--------------LFVGNVPKGLSEEELTSIIKGKGPGV 487 + GR + + K + L V N+ SEE L + K Sbjct: 429 QGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFK----KA 484 Query: 488 VNIEMFKDLHNPSRNRGFLFVEY 556 +I+M +N R +G+ FVE+ Sbjct: 485 TSIKM--PQNNQGRPKGYAFVEF 505 Score = 36.2 bits (82), Expect = 0.064 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 16/149 (10%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + + + L +EE L++L + I M KG+AFV F + A+ A Sbjct: 459 ESKTLIVNNLSYAASEETLQELFKKATSI----KMPQNNQGRPKGYAFVEFPTAEDAKEA 514 Query: 338 IEELHDKDHKGRTLRCSLS----------------QAKHRLFVGNVPKGLSEEELTSIIK 469 + ++ + +GR +R S Q LFV +GLSE+ ++ Sbjct: 515 LNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFV----RGLSEDTTEETLR 570 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G ++ + D + ++GF FV++ Sbjct: 571 ESFEGSISARIVTD-RDTGSSKGFGFVDF 598
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 49.3 bits (116), Expect = 7e-06 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L D TE L + P G I +R+ +D T+ + G+A+V F A+ A++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 ++ KG+ +R SQ L F+ N+ K + + L G NI Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG----NIL 126 Query: 500 MFKDLHNPSRNRGFLFVEY 556 K + + + ++G+ FV + Sbjct: 127 SCKVVCDENGSKGYGFVHF 145 Score = 38.5 bits (88), Expect = 0.013 Identities = 24/82 (29%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 QG +++ L +E LR+ P G I ++M E +KGF FV F++ + A A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + E++ + + L +L+Q K Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 49.3 bits (116), Expect = 7e-06 Identities = 21/61 (34%), Positives = 40/61 (65%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 +++F+GGLP TT+ LR+ E G+I E ++ D++T +++G+ FVT + A+ A + Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70 Query: 344 E 346 + Sbjct: 71 D 71
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 49.3 bits (116), Expect = 7e-06 Identities = 34/137 (24%), Positives = 69/137 (50%), Gaps = 7/137 (5%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DT+++DL+ GE+ + + D T ++GF F+ F + +++ Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 347 LHDKDHK--GRTLRCSLSQAK-----HRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMF 505 K+H+ GR + + A ++FVG + +EE++ G+ + IE+ Sbjct: 136 ---KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYF-GQFGEIEAIELP 191 Query: 506 KDLHNPSRNRGFLFVEY 556 D ++ RGF+F+ + Sbjct: 192 ID-PKLNKRRGFVFITF 207 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/79 (30%), Positives = 42/79 (53%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL + TEE +R+ GEI + L D + + +GF F+TF +D + +E+ Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219 Query: 347 LHDKDHKGRTLRCSLSQAK 403 K H +C + A+ Sbjct: 220 ---KFHTVSGSKCEIKVAQ 235
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 49.3 bits (116), Expect = 7e-06 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L D TE L + P G I +R+ +D T+ + G+A+V F A+ A++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 ++ KG+ +R SQ L F+ N+ K + + L G NI Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG----NIL 126 Query: 500 MFKDLHNPSRNRGFLFVEY 556 K + + + ++G+ FV + Sbjct: 127 SCKVVCDENGSKGYGFVHF 145 Score = 47.8 bits (112), Expect = 2e-05 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 24/153 (15%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++ D +E L++L G V++M D E+ ++KGF FV+F + AQ A++ Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 344 ELHDKDHKGRTLRCSLSQAK------------------------HRLFVGNVPKGLSEEE 451 E++ K+ G+ + +Q K L+V N+ G+ +E Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309 Query: 452 LTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFV 550 L G I K + R++GF FV Sbjct: 310 LRKEFSPFG----TITSAKVMMEGGRSKGFGFV 338 Score = 38.5 bits (88), Expect = 0.013 Identities = 24/82 (29%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 QG +++ L +E LR+ P G I ++M E +KGF FV F++ + A A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + E++ + + L +L+Q K Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371 Score = 34.3 bits (77), Expect = 0.24 Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 15/143 (10%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L + + L G I +++ D+ +KG+ FV F ++ A+ AIE++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 350 HD-------------KDHKGRTLRCSLSQAKH--RLFVGNVPKGLSEEELTSIIKGKGPG 484 + K K R ++AK +++ N + + +E L + GP Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELG-ARAKEFTNVYIKNFGEDMDDERLKELFGKFGP- 216 Query: 485 VVNIEMFKDLHNPSRNRGFLFVE 553 +++++ D S+ GF+ E Sbjct: 217 ALSVKVMTDESGKSKGFGFVSFE 239
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 49.3 bits (116), Expect = 7e-06 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L D TE L + P G I +R+ +D T+ + G+A+V F A+ A++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 ++ KG+ +R SQ L F+ N+ K + + L G NI Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG----NIL 126 Query: 500 MFKDLHNPSRNRGFLFVEY 556 K + + + ++G+ FV + Sbjct: 127 SCKVVCDENGSKGYGFVHF 145 Score = 47.8 bits (112), Expect = 2e-05 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 24/153 (15%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++ D +E L++L G V++M D E+ ++KGF FV+F + AQ A++ Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 344 ELHDKDHKGRTLRCSLSQAK------------------------HRLFVGNVPKGLSEEE 451 E++ K+ G+ + +Q K L+V N+ G+ +E Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309 Query: 452 LTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFV 550 L G I K + R++GF FV Sbjct: 310 LRKEFSPFG----TITSAKVMMEGGRSKGFGFV 338 Score = 38.5 bits (88), Expect = 0.013 Identities = 24/82 (29%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 QG +++ L +E LR+ P G I ++M E +KGF FV F++ + A A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + E++ + + L +L+Q K Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371 Score = 34.3 bits (77), Expect = 0.24 Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 15/143 (10%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L + + L G I +++ D+ +KG+ FV F ++ A+ AIE++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 350 HD-------------KDHKGRTLRCSLSQAKH--RLFVGNVPKGLSEEELTSIIKGKGPG 484 + K K R ++AK +++ N + + +E L + GP Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELG-ARAKEFTNVYIKNFGEDMDDERLKELFGKFGP- 216 Query: 485 VVNIEMFKDLHNPSRNRGFLFVE 553 +++++ D S+ GF+ E Sbjct: 217 ALSVKVMTDESGKSKGFGFVSFE 239
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 49.3 bits (116), Expect = 7e-06 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L D TE L + P G I +R+ +D T+ + G+A+V F A+ A++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 ++ KG+ +R SQ L F+ N+ K + + L G NI Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG----NIL 126 Query: 500 MFKDLHNPSRNRGFLFVEY 556 K + + + ++G+ FV + Sbjct: 127 SCKVVCDENGSKGYGFVHF 145 Score = 47.0 bits (110), Expect = 4e-05 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 24/153 (15%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++ D +E L+ L G V++M D E+ ++KGF FV+F + AQ A++ Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 344 ELHDKDHKGRTLRCSLSQAK------------------------HRLFVGNVPKGLSEEE 451 E++ K+ G+ + +Q K L+V N+ G+ +E Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309 Query: 452 LTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFV 550 L G I K + R++GF FV Sbjct: 310 LRKEFSPFG----TITSAKVMMEGGRSKGFGFV 338 Score = 38.5 bits (88), Expect = 0.013 Identities = 24/82 (29%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 QG +++ L +E LR+ P G I ++M E +KGF FV F++ + A A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + E++ + + L +L+Q K Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371 Score = 34.3 bits (77), Expect = 0.24 Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 15/143 (10%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L + + L G I +++ D+ +KG+ FV F ++ A+ AIE++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 350 HD-------------KDHKGRTLRCSLSQAKH--RLFVGNVPKGLSEEELTSIIKGKGPG 484 + K K R ++AK +++ N + + +E L + GP Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELG-ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGP- 216 Query: 485 VVNIEMFKDLHNPSRNRGFLFVE 553 +++++ D S+ GF+ E Sbjct: 217 ALSVKVMTDESGKSKGFGFVSFE 239
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 49.3 bits (116), Expect = 7e-06 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L D TE L + P G I +R+ +D T+ + G+A+V F A+ A++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 ++ KG+ +R SQ L F+ N+ K + + L G NI Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG----NIL 126 Query: 500 MFKDLHNPSRNRGFLFVEY 556 K + + + ++G+ FV + Sbjct: 127 SCKVVCDENGSKGYGFVHF 145 Score = 47.0 bits (110), Expect = 4e-05 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 24/153 (15%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++ D +E L+ L G V++M D E+ ++KGF FV+F + AQ A++ Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVD 249 Query: 344 ELHDKDHKGRTLRCSLSQAK------------------------HRLFVGNVPKGLSEEE 451 E++ K+ G+ + +Q K L+V N+ G+ +E Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309 Query: 452 LTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFV 550 L G I K + R++GF FV Sbjct: 310 LRKEFSPFG----TITSAKVMMEGGRSKGFGFV 338 Score = 38.5 bits (88), Expect = 0.013 Identities = 24/82 (29%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 QG +++ L +E LR+ P G I ++M E +KGF FV F++ + A A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + E++ + + L +L+Q K Sbjct: 350 VTEMNGRIVATKPLYVALAQRK 371 Score = 34.3 bits (77), Expect = 0.24 Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 15/143 (10%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L + + L G I +++ D+ +KG+ FV F ++ A+ AIE++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 350 HD-------------KDHKGRTLRCSLSQAKH--RLFVGNVPKGLSEEELTSIIKGKGPG 484 + K K R ++AK +++ N + + +E L + GP Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELG-ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGP- 216 Query: 485 VVNIEMFKDLHNPSRNRGFLFVE 553 +++++ D S+ GF+ E Sbjct: 217 ALSVKVMTDESGKSKGFGFVSFE 239
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G +PR E LR+ G + +RL + K+T +KG+A+V F +VA+ + + Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADTM 102 Query: 350 HDKDHKGRTLRCSL---SQAKHRLFVGNVPK 433 ++ R L+C + RLF+G K Sbjct: 103 NNYLFCERLLKCEFVPPEKVHPRLFIGCTAK 133
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/89 (31%), Positives = 52/89 (58%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+G LP D E +L++ GEI ++R++KDK T+++KG+AF+ F ++ A +E+ Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEI 168 Query: 350 HDKDHKGRTLRCSLSQAKHRLFVGNVPKG 436 H+G Q K R+ + ++ +G Sbjct: 169 --GVHRG-------IQIKDRICIVDIERG 188
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 48.9 bits (115), Expect = 1e-05 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Frame = +2 Query: 167 EVFLGGLP-RDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 ++F+G + DTT E+L L P G + +MK FAFV A AIE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGALRAIE 53 Query: 344 ELHDKDHK-GRTLRCSLSQAKH----RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFK 508 LH + + GR L +S+ + ++FVGNV + +EL S+ + +G V+ ++ K Sbjct: 54 ALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRG-RVIECDVVK 112 Query: 509 D 511 D Sbjct: 113 D 113 Score = 38.9 bits (89), Expect = 0.010 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G + T ++LR L E G + E ++KD +AFV + A+ AI + Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQ 131 Query: 347 LHDKDHKGRTLRCSLS 394 L+ K+ KG+ + LS Sbjct: 132 LNGKEVKGKRINVELS 147
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 48.9 bits (115), Expect = 1e-05 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Frame = +2 Query: 167 EVFLGGLP-RDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 ++F+G + DTT E+L L P G + +MK FAFV A AIE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGAVRAIE 53 Query: 344 ELHDKDHK-GRTLRCSLSQAKH----RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFK 508 LH + + GR L +S+ + ++FVGNV + +EL S+ + +G V+ ++ K Sbjct: 54 ALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRG-RVIECDVVK 112 Query: 509 D 511 D Sbjct: 113 D 113 Score = 38.9 bits (89), Expect = 0.010 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G + T ++LR L E G + E ++KD +AFV + A+ AI + Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQ 131 Query: 347 LHDKDHKGRTLRCSLS 394 L+ K+ KG+ + LS Sbjct: 132 LNGKEVKGKRINVELS 147
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 48.9 bits (115), Expect = 1e-05 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Frame = +2 Query: 167 EVFLGGLP-RDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 ++F+G + DTT E+L L P G + +MK FAFV A AIE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGALRAIE 53 Query: 344 ELHDKDHK-GRTLRCSLSQAKH----RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFK 508 LH + + GR L +S+ + ++FVGNV + +EL S+ + +G V+ ++ K Sbjct: 54 ALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRG-RVIECDVVK 112 Query: 509 D 511 D Sbjct: 113 D 113 Score = 38.9 bits (89), Expect = 0.010 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G + T ++LR L E G + E ++KD +AFV + A+ AI + Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQ 131 Query: 347 LHDKDHKGRTLRCSLS 394 L+ K+ KG+ + LS Sbjct: 132 LNGKEVKGKRINVELS 147
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 48.9 bits (115), Expect = 1e-05 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Frame = +2 Query: 167 EVFLGGLP-RDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 ++F+G + DTT E+L L P G + +MK FAFV A AIE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGAVRAIE 53 Query: 344 ELHDKDHK-GRTLRCSLSQAKH----RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFK 508 LH + + GR L +S+ + ++FVGNV + +EL S+ + +G V+ ++ K Sbjct: 54 ALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRG-RVIECDVVK 112 Query: 509 D 511 D Sbjct: 113 D 113 Score = 38.9 bits (89), Expect = 0.010 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G + T ++LR L E G + E ++KD +AFV + A+ AI + Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQ 131 Query: 347 LHDKDHKGRTLRCSLS 394 L+ K+ KG+ + LS Sbjct: 132 LNGKEVKGKRINVELS 147
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+GGL DT EE +R+ GE+ + L D +T + +GF F+TF ++ + +E+ Sbjct: 35 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 94 Query: 347 LHDKDHKGRTLRCSLSQA 400 K H +C + A Sbjct: 95 ---KYHNVGLSKCEIKVA 109
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 48.5 bits (114), Expect = 1e-05 Identities = 21/61 (34%), Positives = 39/61 (63%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 +++F+GGLP TT+ LR+ E G+I E ++ D++T +++G+ FVT + A A + Sbjct: 32 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACK 91 Query: 344 E 346 + Sbjct: 92 D 92
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 48.5 bits (114), Expect = 1e-05 Identities = 26/70 (37%), Positives = 39/70 (55%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +FL + +TE+D ++L P GE+ EV + D T +KGFA+V F + A A EL Sbjct: 327 LFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIEL 386 Query: 350 HDKDHKGRTL 379 + +GR L Sbjct: 387 DKQIFQGRLL 396 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + ++ + LP + T +D+ +L G++ VR+ K K K +GFAFV F A++A Sbjct: 736 KNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPK-KFDKSARGFAFVEFVLPKEAENA 794 Query: 338 IEELHDKDHKGRTL 379 +++L GR L Sbjct: 795 MDQLQGVHLLGRRL 808
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/72 (31%), Positives = 42/72 (58%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +F+GG+ T E DLR+ G + EV+++ D+ +KG+ FVTF ++ AQ ++ Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91 Query: 344 ELHDKDHKGRTL 379 E ++K + L Sbjct: 92 EAEKLNYKDKKL 103
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/72 (31%), Positives = 42/72 (58%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +F+GG+ T E DLR+ G + EV+++ D+ +KG+ FVTF ++ AQ ++ Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91 Query: 344 ELHDKDHKGRTL 379 E ++K + L Sbjct: 92 EAEKLNYKDKKL 103
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 47.8 bits (112), Expect = 2e-05 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q + ++LG L T+ L +LC G + + + +D+ + GF F F + ++A Sbjct: 9 QDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYA 68 Query: 338 IEELHDKDHKGRTLRCSLSQAKH--------RLFVGNVPKGLSEEELTSIIKGKGPGVVN 493 + L+ G+ +R + + LFVGN+ + E L G V Sbjct: 69 CQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKA 128 Query: 494 IEMFKDLHNPSRNRGFLFVEY 556 ++ +D R++G+ FV Y Sbjct: 129 PQVARD--ENGRSKGYGFVSY 147 Score = 33.1 bits (74), Expect = 0.54 Identities = 17/66 (25%), Positives = 34/66 (51%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G+ +F+G L E L LG++ + + E +KG+ FV++ + + A AI Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157 Query: 341 EELHDK 358 E ++++ Sbjct: 158 EAMNNQ 163
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 47.8 bits (112), Expect = 2e-05 Identities = 19/56 (33%), Positives = 39/56 (69%) Frame = +2 Query: 236 GEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTLRCSLSQAK 403 GE+ E +++ D+ET+ ++GF FVTF+ ++ + AIE ++ K+ GR + + +Q++ Sbjct: 11 GEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 47.8 bits (112), Expect = 2e-05 Identities = 22/72 (30%), Positives = 42/72 (58%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +F+GG+ T E DLR+ G + EV+++ D+ +KG+ F+TF ++ AQ ++ Sbjct: 33 NRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQ 91 Query: 344 ELHDKDHKGRTL 379 E ++K + L Sbjct: 92 EAEKLNYKDKKL 103
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 47.4 bits (111), Expect = 3e-05 Identities = 21/82 (25%), Positives = 47/82 (57%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++G L + L++L G + + +++ D+++ ++GF FVT+++ AI+ Sbjct: 207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAID 266 Query: 344 ELHDKDHKGRTLRCSLSQAKHR 409 L+ D GR++R S ++ + R Sbjct: 267 SLNGVDLDGRSIRVSAAEERPR 288 Score = 47.4 bits (111), Expect = 3e-05 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 40/170 (23%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G LP L L E G + V ++ DK T ++GF FVT + K+ + A ++ Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 347 LHDKDHKGRTLRCSLSQA----------------------------------------KH 406 + + GR +R + A + Sbjct: 148 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 207 Query: 407 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 R++VGN+ G+ + L + +G VV+ ++ D + R+RGF FV Y Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQG-NVVDAKVVYD-RDSGRSRGFGFVTY 255
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 47.4 bits (111), Expect = 3e-05 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 8/138 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L D TE L + P G I +R+ +D T+ + G+A++ F A+ A++ Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 ++ + KGR +R SQ L F+ N+ + + L G +++ + Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-DILSCK 129 Query: 500 MFKDLHNPSRNRGFLFVE 553 + D + SR GF+ E Sbjct: 130 VVCDEYG-SRGYGFVHFE 146 Score = 37.4 bits (85), Expect = 0.029 Identities = 23/82 (28%), Positives = 42/82 (51%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 QG +++ L ++ LR+ P G I ++M E +KGF FV F++ + A A Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT--EGGHSKGFGFVCFSSPEEATKA 349 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 + E++ + + L +L+Q K Sbjct: 350 VTEMNGRIVSTKPLYVALAQRK 371
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 47.4 bits (111), Expect = 3e-05 Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++ D +E L++ EP G+I ++M KE ++KGF FV F + A+ A++ Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMS-KEDGKSKGFGFVAFETTEAAEAAVQ 241 Query: 344 ELHDKD-HKGRTLRCSLSQAK 403 L+ KD +G++L + +Q K Sbjct: 242 ALNGKDMGEGKSLYVARAQKK 262 Score = 43.5 bits (101), Expect = 4e-04 Identities = 28/138 (20%), Positives = 62/138 (44%), Gaps = 8/138 (5%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G LP+D E L G + +R+ +D T+ + G+A+V F A+ A++ Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIE 499 ++ + + +R SQ L F+ N+ + + + + G +++ + Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFG-NILSCK 120 Query: 500 MFKDLHNPSRNRGFLFVE 553 + D S+ GF+ E Sbjct: 121 VATDEKGNSKGYGFVHFE 138 Score = 40.0 bits (92), Expect = 0.004 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +2 Query: 194 DTTEED-LRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKG 370 DT ++D LR P G I ++M D+E + +KGF FV F A A A+ EL+ + Sbjct: 296 DTIDDDRLRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTELNGRVVGS 354 Query: 371 RTLRCSLSQAK 403 + L +L+Q K Sbjct: 355 KPLYVALAQRK 365
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/78 (34%), Positives = 45/78 (57%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ GL DTTEE L++ E G + R++ D+ET +KGF FV F +++ A+ A E + Sbjct: 570 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 626 Query: 350 HDKDHKGRTLRCSLSQAK 403 D + G + ++ K Sbjct: 627 EDGEIDGNKVTLDWAKPK 644 Score = 45.4 bits (106), Expect = 1e-04 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%) Frame = +2 Query: 227 EPLGEIFE----VRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTLRCSL- 391 E L E+FE +++ ++ K KG+AF+ F + + A+ A+ + + +GRT+R L Sbjct: 500 ETLEEVFEKATFIKVPQNPHGKP-KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQ 558 Query: 392 -----SQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 SQ LFV KGLSE+ +K G V + D S ++GF FV++ Sbjct: 559 GSNSRSQPSKTLFV----KGLSEDTTEETLKESFEGSVRARIVTDRETGS-SKGFGFVDF 613
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/78 (34%), Positives = 45/78 (57%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ GL DTTEE L++ E G + R++ D+ET +KGF FV F +++ A+ A E + Sbjct: 576 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632 Query: 350 HDKDHKGRTLRCSLSQAK 403 D + G + ++ K Sbjct: 633 EDGEIDGNKVTLDWAKPK 650 Score = 45.4 bits (106), Expect = 1e-04 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 10/143 (6%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + + L L TEE L+++ E + +++ ++ K +KG+AF+ F + + A+ A Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPHGK-SKGYAFIEFASFEDAKEA 541 Query: 338 IEELHDKDHKGRTLRCSL----------SQAKHRLFVGNVPKGLSEEELTSIIKGKGPGV 487 + + + +GRT+R L SQ LFV KGLSE+ +K G Sbjct: 542 LNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFV----KGLSEDTTEETLKESFEGS 597 Query: 488 VNIEMFKDLHNPSRNRGFLFVEY 556 V + D S ++GF FV++ Sbjct: 598 VRARIVTDRETGS-SKGFGFVDF 619 Score = 29.3 bits (64), Expect = 7.8 Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 18/137 (13%) Frame = +2 Query: 200 TEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTL 379 TE++L+++ E + E+RL+ + +KG A++ F ++ A+ +EE + GR++ Sbjct: 408 TEDELKEVFE---DAVEIRLVS--QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 462 Query: 380 -----------------RCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFK 508 + S L + N+ +EE L + + K Sbjct: 463 SLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFE-------KATFIK 515 Query: 509 DLHNP-SRNRGFLFVEY 556 NP +++G+ F+E+ Sbjct: 516 VPQNPHGKSKGYAFIEF 532
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 47.0 bits (110), Expect = 4e-05 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 23/152 (15%) Frame = +2 Query: 170 VFLGGLPRDTTEED--LRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 VF+ LP E D LR L E GE+ ++R + + +G+ +V F + A A+E Sbjct: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRG-DFRGYCYVEFKEEKSALQALE 764 Query: 344 ELHDKDHKGRTL-----------------RCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 472 + K +GR + R S S KH+LF+ +P ++EEL I K Sbjct: 765 -MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKA 823 Query: 473 KGPGVVNIEMFKDL----HNPSRNRGFLFVEY 556 G KDL + + +G +VEY Sbjct: 824 HG-------TVKDLRLVTNRAGKPKGLAYVEY 848 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/81 (25%), Positives = 45/81 (55%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+ GLP T+E+L ++C+ G + ++RL+ ++ K KG A+V + + A A+ + Sbjct: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP-KGLAYVEYENESQASQAVMK 860 Query: 347 LHDKDHKGRTLRCSLSQAKHR 409 + K ++ ++S R Sbjct: 861 MDGMTIKENIIKVAISNPPQR 881
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/78 (34%), Positives = 45/78 (57%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ GL DTTEE L++ E G + R++ D+ET +KGF FV F +++ A+ A E + Sbjct: 573 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 350 HDKDHKGRTLRCSLSQAK 403 D + G + ++ K Sbjct: 630 EDGEIDGNKVTLDWAKPK 647 Score = 47.0 bits (110), Expect = 4e-05 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 10/143 (6%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + + L L TEE L+++ E + +++ ++++ K +KG+AF+ F + + A+ A Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQGK-SKGYAFIEFASFEDAKEA 538 Query: 338 IEELHDKDHKGRTLRCSL----------SQAKHRLFVGNVPKGLSEEELTSIIKGKGPGV 487 + + + +GRT+R L SQ LFV KGLSE+ +K G Sbjct: 539 LNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFV----KGLSEDTTEETLKESFEGS 594 Query: 488 VNIEMFKDLHNPSRNRGFLFVEY 556 V + D S ++GF FV++ Sbjct: 595 VRARIVTDRETGS-SKGFGFVDF 616
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 46.6 bits (109), Expect = 5e-05 Identities = 19/52 (36%), Positives = 32/52 (61%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKD 322 ++F+GGL DT EE +R+ GE+ + L D +T + +GF F+TF ++ Sbjct: 173 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFNQEE 224
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/71 (36%), Positives = 38/71 (53%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G L + EE L + EP G+I VR+++D +T KGFA+V F A+ Sbjct: 361 VFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALLLH 420 Query: 350 HDKDHKGRTLR 382 K H+G+ R Sbjct: 421 EKKIHEGKKAR 431
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/74 (35%), Positives = 40/74 (54%) Frame = +2 Query: 182 GLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKD 361 GL TTE DLR++ G + V ++ D+ T ++GFAFV F D ++ A+E + + Sbjct: 125 GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGME 184 Query: 362 HKGRTLRCSLSQAK 403 GR +R S K Sbjct: 185 LDGRRIRVDYSITK 198
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 46.6 bits (109), Expect = 5e-05 Identities = 21/82 (25%), Positives = 47/82 (57%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + V++G L + L++L G + + +++ D+++ ++GF FVT+++ AI+ Sbjct: 208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAID 267 Query: 344 ELHDKDHKGRTLRCSLSQAKHR 409 L+ D GR++R S ++ + R Sbjct: 268 SLNGIDLDGRSIRVSAAEERPR 289 Score = 45.4 bits (106), Expect = 1e-04 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 40/170 (23%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+G LP L L E G + V ++ DK + ++GF FVT + K+ + A ++ Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 347 LHDKDHKGRTLRCSLSQA----------------------------------------KH 406 + + GR +R + A + Sbjct: 149 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 208 Query: 407 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 R++VGN+ G+ + L + +G VV+ ++ D + R+RGF FV Y Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQG-NVVDAKVVYD-RDSGRSRGFGFVTY 256
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 46.6 bits (109), Expect = 5e-05 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 23/152 (15%) Frame = +2 Query: 170 VFLGGLPRDTTEED--LRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 VF+ LP E D LR L E GE+ ++R + + +G+ +V F + A A+E Sbjct: 724 VFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNRG-DFRGYRYVEFKEEKSALQALE 782 Query: 344 ELHDKDHKGRTL-----------------RCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 472 + K +GR + R S S KH+LF+ +P ++EEL I K Sbjct: 783 -MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKA 841 Query: 473 KGPGVVNIEMFKDL----HNPSRNRGFLFVEY 556 G KDL + + +G +VEY Sbjct: 842 HG-------TVKDLRLVTNRAGKPKGLAYVEY 866 Score = 43.1 bits (100), Expect = 5e-04 Identities = 21/81 (25%), Positives = 45/81 (55%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+ GLP T+E+L ++C+ G + ++RL+ ++ K KG A+V + + A A+ + Sbjct: 820 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP-KGLAYVEYENESQASQAVMK 878 Query: 347 LHDKDHKGRTLRCSLSQAKHR 409 + K ++ ++S R Sbjct: 879 MDGMTIKENVIKVAISNPPQR 899
>CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associated RNA-binding| fly homolog) (P19) Length = 399 Score = 46.6 bits (109), Expect = 5e-05 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 8/91 (8%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFE--------VRLMKDKETKENKGFAFVTFT 313 Q +F+ G+ TTE+D+ +G I + + L K+KET +KG A VT+ Sbjct: 118 QEDTIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYD 177 Query: 314 AKDVAQHAIEELHDKDHKGRTLRCSLSQAKH 406 + AQ AIE +D G ++ SL+Q ++ Sbjct: 178 DTNAAQSAIEWFDGRDFNGNAIKVSLAQRQN 208
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/74 (35%), Positives = 40/74 (54%) Frame = +2 Query: 182 GLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKD 361 GL TTE DLR++ G + V ++ D+ T ++GFAFV F D ++ A+E + + Sbjct: 123 GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGME 182 Query: 362 HKGRTLRCSLSQAK 403 GR +R S K Sbjct: 183 LDGRRIRVDYSITK 196
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 46.2 bits (108), Expect = 6e-05 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 10/143 (6%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + + L L TEE L+++ E I + + ++KG+AF+ F + + A+ A Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFI----KVPQNQNGKSKGYAFIEFASFEDAKEA 539 Query: 338 IEELHDKDHKGRTLRCSL----------SQAKHRLFVGNVPKGLSEEELTSIIKGKGPGV 487 + + ++ +GR +R L SQ LFV KGLSE+ +K G Sbjct: 540 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFV----KGLSEDTTEETLKESFDGS 595 Query: 488 VNIEMFKDLHNPSRNRGFLFVEY 556 V + D S ++GF FV++ Sbjct: 596 VRARIVTDRETGS-SKGFGFVDF 617 Score = 45.8 bits (107), Expect = 8e-05 Identities = 26/78 (33%), Positives = 45/78 (57%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ GL DTTEE L++ + G + R++ D+ET +KGF FV F +++ A+ A E + Sbjct: 574 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630 Query: 350 HDKDHKGRTLRCSLSQAK 403 D + G + ++ K Sbjct: 631 EDGEIDGNKVTLDWAKPK 648 Score = 29.6 bits (65), Expect = 6.0 Identities = 18/65 (27%), Positives = 35/65 (53%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP T+++L+++ E EI RL+ + ++KG A++ F + A+ EE + Sbjct: 400 LPYKVTQDELKEVFEDAAEI---RLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 454 Query: 365 KGRTL 379 GR++ Sbjct: 455 DGRSI 459
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 46.2 bits (108), Expect = 6e-05 Identities = 25/83 (30%), Positives = 49/83 (59%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +F+GG P TTE +LR+ E + +V+++K + ++KG+ F+TF +D A+ I Sbjct: 67 NRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD-GQSKGYGFITFETEDQAEE-IR 124 Query: 344 ELHDKDHKGRTLRCSLSQAKHRL 412 +L K + R+ + +L A ++ Sbjct: 125 KLTPKQLEFRSRKLNLGPAIRKI 147
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 46.2 bits (108), Expect = 6e-05 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 2/132 (1%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++ + LP+D++ +++ +L + +K NK AFVT + AQ AI+ Sbjct: 59 KILVKNLPQDSSSQEVHELLQDYE-------LKYCYVDRNKRTAFVTLLNGEQAQSAIQR 111 Query: 347 LHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHN-- 520 H +GR L L L + N+P + EE +++ G NIE +++ Sbjct: 112 FHQFSFRGRELTVQLQPTDALLCITNLPISFTLEEFEELVRAYG----NIERCFLVYSEV 167 Query: 521 PSRNRGFLFVEY 556 ++G+ FVEY Sbjct: 168 TGHSKGYGFVEY 179
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 46.2 bits (108), Expect = 6e-05 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 10/143 (6%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + + L L TEE L+++ E I + + ++KG+AF+ F + + A+ A Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFEKATFI----KVPQNQNGKSKGYAFIEFASFEDAKEA 540 Query: 338 IEELHDKDHKGRTLRCSL----------SQAKHRLFVGNVPKGLSEEELTSIIKGKGPGV 487 + + ++ +GR +R L SQ LFV KGLSE+ +K G Sbjct: 541 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFV----KGLSEDTTEETLKESFDGS 596 Query: 488 VNIEMFKDLHNPSRNRGFLFVEY 556 V + D S ++GF FV++ Sbjct: 597 VRARIVTDRETGS-SKGFGFVDF 618 Score = 45.8 bits (107), Expect = 8e-05 Identities = 26/78 (33%), Positives = 45/78 (57%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ GL DTTEE L++ + G + R++ D+ET +KGF FV F +++ A+ A E + Sbjct: 575 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631 Query: 350 HDKDHKGRTLRCSLSQAK 403 D + G + ++ K Sbjct: 632 EDGEIDGNKVTLDWAKPK 649 Score = 29.6 bits (65), Expect = 6.0 Identities = 18/65 (27%), Positives = 35/65 (53%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP T+++L+++ E EI RL+ + ++KG A++ F + A+ EE + Sbjct: 401 LPYKVTQDELKEVFEDAAEI---RLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 455 Query: 365 KGRTL 379 GR++ Sbjct: 456 DGRSI 460
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 46.2 bits (108), Expect = 6e-05 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 10/143 (6%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + + L L TEE L+++ E I + + ++KG+AF+ F + + A+ A Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFI----KVPQNQNGKSKGYAFIEFASFEDAKEA 538 Query: 338 IEELHDKDHKGRTLRCSL----------SQAKHRLFVGNVPKGLSEEELTSIIKGKGPGV 487 + + ++ +GR +R L SQ LFV KGLSE+ +K G Sbjct: 539 LNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFV----KGLSEDTTEETLKESFDGS 594 Query: 488 VNIEMFKDLHNPSRNRGFLFVEY 556 V + D S ++GF FV++ Sbjct: 595 VRARIVTDRETGS-SKGFGFVDF 616 Score = 45.8 bits (107), Expect = 8e-05 Identities = 26/78 (33%), Positives = 45/78 (57%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ GL DTTEE L++ + G + R++ D+ET +KGF FV F +++ A+ A E + Sbjct: 573 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 350 HDKDHKGRTLRCSLSQAK 403 D + G + ++ K Sbjct: 630 EDGEIDGNKVTLDWAKPK 647 Score = 29.6 bits (65), Expect = 6.0 Identities = 18/65 (27%), Positives = 35/65 (53%) Frame = +2 Query: 185 LPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDH 364 LP T+++L+++ E EI RL+ + ++KG A++ F + A+ EE + Sbjct: 399 LPYKVTQDELKEVFEDAAEI---RLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 453 Query: 365 KGRTL 379 GR++ Sbjct: 454 DGRSI 458
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 46.2 bits (108), Expect = 6e-05 Identities = 26/82 (31%), Positives = 45/82 (54%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 Q +F+ GL DTTEE L++ + G + R++ D++T +KGF FV F+ + A+ A Sbjct: 500 QSKTLFVRGLSEDTTEETLKEAFD--GSV-NARIVTDRDTGASKGFGFVDFSTAEDAKAA 556 Query: 338 IEELHDKDHKGRTLRCSLSQAK 403 E + D + G + ++ K Sbjct: 557 KEAMEDGEIDGNKVTLDFAKPK 578 Score = 45.1 bits (105), Expect = 1e-04 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 15/149 (10%) Frame = +2 Query: 155 PQGSEVFL--GGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVA 328 P+G L L TE+ LR++ E + +R+ +++ KGFAF+ F++ + A Sbjct: 409 PEGDSKVLVVNNLSYSATEDSLREVFE---KATSIRIPQNQGRA--KGFAFIEFSSAEDA 463 Query: 329 QHAIEELHDKDHKGRTLRCSLSQA-------------KHRLFVGNVPKGLSEEELTSIIK 469 + A++ ++ + +GR++R SQ LFV +GLSE+ +K Sbjct: 464 KDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFV----RGLSEDTTEETLK 519 Query: 470 GKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G VN + D + ++GF FV++ Sbjct: 520 EAFDGSVNARIVTD-RDTGASKGFGFVDF 547 Score = 43.5 bits (101), Expect = 4e-04 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 14/143 (9%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ +P TT E+L+++ E +I R+ K+ NKG A+V F+ +D A A+EE Sbjct: 326 LFVKNIPYSTTVEELQEIFENAKDI---RIPTGKDGS-NKGIAYVEFSNEDEANKALEEK 381 Query: 350 HDKDHKGRTLRCSLSQAKHR--------------LFVGNVPKGLSEEELTSIIKGKGPGV 487 + +GR++ + K + L V N+ +E+ L + + Sbjct: 382 QGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFE------ 435 Query: 488 VNIEMFKDLHNPSRNRGFLFVEY 556 + N R +GF F+E+ Sbjct: 436 -KATSIRIPQNQGRAKGFAFIEF 457 Score = 34.3 bits (77), Expect = 0.24 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 19/152 (12%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVR--LMKDKETKENKGFAFVTFTAKDVAQ 331 +G +F+G L + ++ +L + L E F + ++D +K F +V F++++ + Sbjct: 230 EGLSIFIGNL---NSTKEFDELKDALREFFSKKNLTIQDIRIGNSKKFGYVDFSSEEEVE 286 Query: 332 HAIEELHDKD-------------HKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 472 A++ K K +T + LFV N+P + EEL I Sbjct: 287 KALKLTGKKILGTEVKIEKAMAFDKNKTAENKKERDSRTLFVKNIPYSTTVEELQEI--- 343 Query: 473 KGPGVVNIEMFKDLHNPS----RNRGFLFVEY 556 E KD+ P+ N+G +VE+ Sbjct: 344 -------FENAKDIRIPTGKDGSNKGIAYVEF 368
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 45.8 bits (107), Expect = 8e-05 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 23/152 (15%) Frame = +2 Query: 170 VFLGGLPRDTTEED--LRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 VF+ LP E + LR L E GE+ ++R + + +G+ +V F + AQ A+E Sbjct: 706 VFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRG-DFRGYCYVEFGEEKSAQQALE 764 Query: 344 ELHDKDHKGRTL-----------------RCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 472 L K +GR + R S + KH+LF+ +P ++EEL I K Sbjct: 765 -LDRKIVEGRPMFVSPCVDKSKNPDFKVFRYSTTLEKHKLFISGLPFSCTKEELEDICKA 823 Query: 473 KGPGVVNIEMFKDL----HNPSRNRGFLFVEY 556 G KDL + + +G +VEY Sbjct: 824 HG-------TVKDLRLVTNRAGKPKGLAYVEY 848 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = +2 Query: 167 EVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEE 346 ++F+ GLP T+E+L +C+ G + ++RL+ ++ K KG A+V + + A A+ + Sbjct: 802 KLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKP-KGLAYVEYENESQASQAVMK 860 Query: 347 LHDKDHKGRTLRCSLSQAKHR 409 + + ++ ++S R Sbjct: 861 MDGMTIRENVIKVAISNPPQR 881
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 45.8 bits (107), Expect = 8e-05 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G +P+ E L++ G + +RL + K+T +KG+A+V + +VA+ + + Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTM 102 Query: 350 HDKDHKGRTLRCSL---SQAKHRLFVG 421 ++ R L+C + RLF+G Sbjct: 103 NNYLFCERLLKCEFVTPEKVHPRLFIG 129
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/67 (34%), Positives = 41/67 (61%) Frame = +2 Query: 197 TTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRT 376 T+ + LR++ E G + +V + +D+ TKE++GFAFV F K A+ A++ + GR Sbjct: 24 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 83 Query: 377 LRCSLSQ 397 LR +++ Sbjct: 84 LRVQMAR 90
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/67 (34%), Positives = 41/67 (61%) Frame = +2 Query: 197 TTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRT 376 T+ + LR++ E G + +V + +D+ TKE++GFAFV F K A+ A++ + GR Sbjct: 24 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 83 Query: 377 LRCSLSQ 397 LR +++ Sbjct: 84 LRVQMAR 90
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/67 (34%), Positives = 41/67 (61%) Frame = +2 Query: 197 TTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRT 376 T+ + LR++ E G + +V + +D+ TKE++GFAFV F K A+ A++ + GR Sbjct: 24 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 83 Query: 377 LRCSLSQ 397 LR +++ Sbjct: 84 LRVQMAR 90
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/67 (34%), Positives = 41/67 (61%) Frame = +2 Query: 197 TTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRT 376 T+ + LR++ E G + +V + +D+ TKE++GFAFV F K A+ A++ + GR Sbjct: 24 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 83 Query: 377 LRCSLSQ 397 LR +++ Sbjct: 84 LRVQMAR 90
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/67 (34%), Positives = 41/67 (61%) Frame = +2 Query: 197 TTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRT 376 T+ + LR++ E G + +V + +D+ TKE++GFAFV F K A+ A++ + GR Sbjct: 25 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 84 Query: 377 LRCSLSQ 397 LR +++ Sbjct: 85 LRVQMAR 91
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 45.4 bits (106), Expect = 1e-04 Identities = 20/74 (27%), Positives = 40/74 (54%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G+ VF+G +P D +E+ + ++ +G + +L+ D ET KG+ F F + A+ Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65 Query: 341 EELHDKDHKGRTLR 382 +L++ + R +R Sbjct: 66 RKLNNSELGPRKIR 79 Score = 33.1 bits (74), Expect = 0.54 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%) Frame = +2 Query: 410 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNP--SRNRGFLFVEYY 559 +FVGN+P +SE+++T I GP ++ FK + +P +G+ F E++ Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGP----VKTFKLVLDPETGSGKGYGFCEFF 56
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 45.1 bits (105), Expect = 1e-04 Identities = 25/64 (39%), Positives = 38/64 (59%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 S +F+G L +TT+ DL++ +G+I VRLM ++T + KGF FV F D A+E Sbjct: 228 SILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287 Query: 344 ELHD 355 H+ Sbjct: 288 LGHN 291 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +2 Query: 191 RDTTEEDLRQLCEPLGEIFEVRLMKDKETK-ENKGFAFVTFTAKDVAQHAIEELHDKDHK 367 ++ +EE+++ + +I + + KE + +NKGFA+V F +D + A+ + +K Sbjct: 134 KEVSEENIKPITTE--QITRIHMPMSKEKRFQNKGFAYVDFATEDALKLAL-QCSEKALN 190 Query: 368 GRTL 379 GR + Sbjct: 191 GRNI 194
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/60 (36%), Positives = 38/60 (63%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 S + + GLP+ TEE LR+ G++ +V+LMK K E++ FAF+ + + D A+ A++ Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMK-KRNGESRKFAFIGYKSADAAERAVK 60 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ + + +EED R L G + EV + D T ++KGF +V F K+ A A L Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371 Query: 350 HDKDHKGRTLRCSLSQAK--HRL 412 + +GR L + K HRL Sbjct: 372 DKQIFQGRLLHILPADKKKDHRL 394 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/74 (32%), Positives = 39/74 (52%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 + S++ + LP + T +DL +L G++ VR+ K K + +GFAFV F A+ A Sbjct: 715 KSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPK-KFDQSARGFAFVEFNLMKEAETA 773 Query: 338 IEELHDKDHKGRTL 379 + +L GR L Sbjct: 774 MSQLEGVHLLGRRL 787
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 45.1 bits (105), Expect = 1e-04 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 21/150 (14%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+ L T +L E G + + ++++DK + +KG A+V F +D Q AI L Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-AL 300 Query: 350 HDKDHKGRTLRCSLSQAK---------------------HRLFVGNVPKGLSEEELTSII 466 K G + L++A+ HRL V N+ L++E++ +I Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIF 360 Query: 467 KGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 + G + + + +D N R++GF +++Y Sbjct: 361 EPFG-DIEFVHLQRDDQN--RSKGFGYIQY 387 Score = 32.3 bits (72), Expect = 0.92 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +2 Query: 203 EEDLRQLC-EPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTL 379 E+D+++ C E G++ + ++ ++ G FV F D A+ AI LH + GRT+ Sbjct: 530 EQDVKEECDEKYGKVVHIAVVPNE-----LGQIFVKFENADFAEKAITGLHQRWFGGRTI 584 Query: 380 RCSL 391 + S+ Sbjct: 585 KASI 588
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/61 (34%), Positives = 36/61 (59%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 +G VF+ L D+ EE+L +L + GE+ VR++ +T+ +KG AF F ++ AQ Sbjct: 332 EGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKC 391 Query: 338 I 340 + Sbjct: 392 L 392 Score = 43.1 bits (100), Expect = 5e-04 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 31/163 (19%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G +F+G LP E L +L +G + + ++ +K +K +GF +VTF+ + Q A+ Sbjct: 2 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61 Query: 341 EEL------------------HDKDHKG------------RTLRCSLSQAKHRLFVGNVP 430 +E+ + KG + + ++ K RL + N+ Sbjct: 62 KEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLS 121 Query: 431 KGLSEEELTSIIKGKGPGV-VNIEMFKDLHNPSRNRGFLFVEY 556 SE++L ++ G + VNI D + RGF FV++ Sbjct: 122 FKCSEDDLKTVFAQFGAVLEVNIPRKPD----GKMRGFGFVQF 160 Score = 35.0 bits (79), Expect = 0.14 Identities = 21/70 (30%), Positives = 38/70 (54%) Frame = +2 Query: 200 TEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTL 379 +E+DL+ + G + EV + + + K +GF FV F A A++ ++ K+ KGRT+ Sbjct: 125 SEDDLKTVFAQFGAVLEVNIPRKPDGKM-RGFGFVQFKNLLEAGKALKGMNMKEIKGRTV 183 Query: 380 RCSLSQAKHR 409 + AK + Sbjct: 184 AVDWAVAKDK 193
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 44.3 bits (103), Expect = 2e-04 Identities = 28/78 (35%), Positives = 40/78 (51%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +F+ L ++EEDL +L G + E+ D TK+ KGFAFVTF + A A E+ Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 461 Query: 350 HDKDHKGRTLRCSLSQAK 403 + +GR L S K Sbjct: 462 DGQVFQGRMLHVLPSTIK 479 Score = 37.0 bits (84), Expect = 0.038 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKE-TKENKGFAFVTFTAKDVAQHAI 340 S++ + +P + ++R+L GE+ VRL K T ++GF FV F K A+ A Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883 Query: 341 EELHDKDH 364 L H Sbjct: 884 NALCHSTH 891 Score = 30.4 bits (67), Expect = 3.5 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 34/163 (20%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA---- 337 V L G P + TE+++ + PL + +R++++ + G+ FV ++++ + A Sbjct: 295 VKLRGAPFNVTEKNVIEFLAPLKPV-AIRIVRNAHGNKT-GYVFVDLSSEEEVKKALKCN 352 Query: 338 --------IEELHDKDH-------------KGRTLRCSLSQA----KHRLFVGNVPKGLS 442 IE +K +GRTL + + RLFV N+ S Sbjct: 353 RDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSS 412 Query: 443 EEELTSIIKGKGPGVVNIEMFKDLHNP-----SRNRGFLFVEY 556 EE+L + GP +LH P + +GF FV + Sbjct: 413 EEDLEKLFSAYGP-------LSELHYPIDSLTKKPKGFAFVTF 448
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/79 (31%), Positives = 43/79 (54%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 S++ + LP + T++D+++L G + VR+ K K E++GFAF + + A+HA+ Sbjct: 703 SKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPK-KFNSESRGFAFAEYVSAKEAEHAMS 761 Query: 344 ELHDKDHKGRTLRCSLSQA 400 L GR L +QA Sbjct: 762 ALQGTHLLGRRLVLQYAQA 780 Score = 41.2 bits (95), Expect = 0.002 Identities = 28/70 (40%), Positives = 35/70 (50%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +FL L EED RQL GE+ EV L + +T + KGFA V F + A A E Sbjct: 303 LFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQ 362 Query: 350 HDKDHKGRTL 379 K +GR L Sbjct: 363 DGKIFQGRLL 372
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 43.9 bits (102), Expect = 3e-04 Identities = 27/80 (33%), Positives = 41/80 (51%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G L D +E DL + G + V+L D+ET +GF FV A AIE L Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 350 HDKDHKGRTLRCSLSQAKHR 409 + GR L+ +++AK R Sbjct: 63 DGAEWMGRDLK--VNKAKPR 80
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/80 (31%), Positives = 42/80 (52%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + VF+ + D +E L++L G V++++D K +KGF FV + + AQ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVL 257 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 +LH K G+ L +Q K Sbjct: 258 DLHGKSIDGKVLYVGRAQKK 277 Score = 42.0 bits (97), Expect = 0.001 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G L D TE+ L + P G + R+ +D T+ G+ +V F A+ A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 350 HDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIEMF 505 + G+ R SQ RL F+ N+ K + L + G NI Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG----NILSC 135 Query: 506 KDLHNPSRNRGFLFVEY 556 K + + + ++G+ +V + Sbjct: 136 KVVCDDNGSKGYAYVHF 152
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/80 (31%), Positives = 42/80 (52%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + VF+ + D +E L++L G V++++D K +KGF FV + + AQ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVL 257 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 +LH K G+ L +Q K Sbjct: 258 DLHGKSIDGKVLYVGRAQKK 277 Score = 42.0 bits (97), Expect = 0.001 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G L D TE+ L + P G + R+ +D T+ G+ +V F A+ A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 350 HDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIEMF 505 + G+ R SQ RL F+ N+ K + L + G NI Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG----NILSC 135 Query: 506 KDLHNPSRNRGFLFVEY 556 K + + + ++G+ +V + Sbjct: 136 KVVCDDNGSKGYAYVHF 152
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/80 (31%), Positives = 42/80 (52%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + VF+ + D +E L++L G V++++D K +KGF FV + + AQ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVL 257 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 +LH K G+ L +Q K Sbjct: 258 DLHGKSIDGKVLYVGRAQKK 277 Score = 42.0 bits (97), Expect = 0.001 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G L D TE+ L + P G + R+ +D T+ G+ +V F A+ A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 350 HDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIEMF 505 + G+ R SQ RL F+ N+ K + L + G NI Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG----NILSC 135 Query: 506 KDLHNPSRNRGFLFVEY 556 K + + + ++G+ +V + Sbjct: 136 KVVCDDNGSKGYAYVHF 152
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/80 (31%), Positives = 42/80 (52%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + VF+ + D +E L++L G V++++D K +KGF FV + + AQ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVL 257 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 +LH K G+ L +Q K Sbjct: 258 DLHGKSIDGKVLYVGRAQKK 277 Score = 42.0 bits (97), Expect = 0.001 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G L D TE+ L + P G + R+ +D T+ G+ +V F A+ A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 350 HDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIEMF 505 + G+ R SQ RL F+ N+ K + L + G NI Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG----NILSC 135 Query: 506 KDLHNPSRNRGFLFVEY 556 K + + + ++G+ +V + Sbjct: 136 KVVCDDNGSKGYAYVHF 152
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/80 (31%), Positives = 42/80 (52%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + VF+ + D +E L++L G V++++D K +KGF FV + + AQ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVL 257 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 +LH K G+ L +Q K Sbjct: 258 DLHGKSIDGKVLYVGRAQKK 277 Score = 42.0 bits (97), Expect = 0.001 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G L D TE+ L + P G + R+ +D T+ G+ +V F A+ A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 350 HDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIEMF 505 + G+ R SQ RL F+ N+ K + L + G NI Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG----NILSC 135 Query: 506 KDLHNPSRNRGFLFVEY 556 K + + + ++G+ +V + Sbjct: 136 KVVCDDNGSKGYAYVHF 152
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/80 (31%), Positives = 42/80 (52%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + VF+ + D +E L++L G V++++D K +KGF FV + + AQ A+ Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVL 257 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 +LH K G+ L +Q K Sbjct: 258 DLHGKSIDGKVLYVGRAQKK 277 Score = 42.0 bits (97), Expect = 0.001 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 +++G L D TE+ L + P G + R+ +D T+ G+ +V F A+ A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 350 HDKDHKGRTLRCSLSQAKHRL--------FVGNVPKGLSEEELTSIIKGKGPGVVNIEMF 505 + G+ R SQ RL F+ N+ K + L + G NI Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG----NILSC 135 Query: 506 KDLHNPSRNRGFLFVEY 556 K + + + ++G+ +V + Sbjct: 136 KVVCDDNGSKGYAYVHF 152
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 43.5 bits (101), Expect = 4e-04 Identities = 25/80 (31%), Positives = 44/80 (55%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 S +++ + TEE+LR+ G I +LM D++ K +KGF FV F+ + A A++ Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPEEAIDAVK 362 Query: 344 ELHDKDHKGRTLRCSLSQAK 403 H + G+ L +++Q K Sbjct: 363 TFHGQMFHGKPLYVAIAQKK 382 Score = 35.4 bits (80), Expect = 0.11 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 8/141 (5%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P + +++G L TE L + VRL KD + + + + F ++ A Sbjct: 21 PVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANL 80 Query: 335 AIEELHDKDHKGRTLRCSLS--------QAKHRLFVGNVPKGLSEEELTSIIKGKGPGVV 490 AIE+ ++ G+ +R S +FV N+P+ ++ L + K G +V Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFG-NIV 139 Query: 491 NIEMFKDLHNPSRNRGFLFVE 553 + ++ SR GF+ E Sbjct: 140 SCKVATLEDGKSRGYGFVQFE 160
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 43.5 bits (101), Expect = 4e-04 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA---- 337 VF+G L + EE L + G++ VR+++D +T KGFA+V F + + A Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALLLN 335 Query: 338 ---IEELHDKDHKGRTLRCSLSQAKH 406 I EL R LR S ++++H Sbjct: 336 GKGINELSKSTTNKRKLRVSRAKSQH 361
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/72 (31%), Positives = 36/72 (50%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +F+ L +T E +L + P G+I E+ + D +KGFA+V + D A A Sbjct: 295 ARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYR 354 Query: 344 ELHDKDHKGRTL 379 L K +GR L Sbjct: 355 NLDGKIFQGRLL 366 Score = 30.4 bits (67), Expect = 3.5 Identities = 30/92 (32%), Positives = 40/92 (43%) Frame = +2 Query: 197 TTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRT 376 T EDLR+L EP G+I + LM T A V F D AQ A + L + Sbjct: 489 TKTEDLRKLFEPFGQITRL-LMPPSGT-----IAIVAFARPDEAQKAFKSLAYRKLGDSI 542 Query: 377 LRCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 472 L L +A LF +VP E ++ +G Sbjct: 543 L--FLEKAPKDLFEADVPPQNPLPETKAVSQG 572
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 43.5 bits (101), Expect = 4e-04 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Frame = +2 Query: 149 LPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVA 328 +P ++F+GGLP ++ +++L G + L+KD T +KG+AF + +V Sbjct: 254 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 313 Query: 329 QHAIEELHDK---DHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKG 472 AI L+ D K R S+ AK+ V ++P +++ +T + G Sbjct: 314 DQAIAGLNGMQLGDKKLLVQRASVG-AKNATLV-SLPSTINQTPVTLQVPG 362 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/51 (27%), Positives = 29/51 (56%) Frame = +2 Query: 404 HRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 H+LF+G +P L+++++ ++ GP + + KD ++G+ F EY Sbjct: 259 HKLFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVKD-SATGLSKGYAFCEY 307
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Frame = +2 Query: 203 EEDLRQ-LCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTL 379 E LR+ L P I V ++++KET +++G AFVTF++++VA+ A+ L + + L Sbjct: 204 ENSLREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLIL 263 Query: 380 RCSLSQAK 403 R S+ K Sbjct: 264 RVEWSKPK 271
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 43.1 bits (100), Expect = 5e-04 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 31/163 (19%) Frame = +2 Query: 161 GSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAI 340 G +F+G LP + L +L +G + + ++ +K +K +GF +VTF+ + Q A+ Sbjct: 2 GLTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61 Query: 341 EE-----------------LHDKDHKGRT-------------LRCSLSQAKHRLFVGNVP 430 +E L +K + R + ++ K RL + N+ Sbjct: 62 KEITTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLS 121 Query: 431 KGLSEEELTSIIKGKGPGV-VNIEMFKDLHNPSRNRGFLFVEY 556 SE++L ++ G + VNI D + RGF FV++ Sbjct: 122 FKCSEDDLKAVFTHYGTVLEVNIPKKPD----GKMRGFAFVQF 160 Score = 40.4 bits (93), Expect = 0.003 Identities = 19/61 (31%), Positives = 35/61 (57%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 +G VF+ L D+ EE L ++ + G++ VR++ +T+ +KG AF F ++ AQ Sbjct: 322 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKC 381 Query: 338 I 340 + Sbjct: 382 L 382 Score = 35.8 bits (81), Expect = 0.084 Identities = 23/70 (32%), Positives = 38/70 (54%) Frame = +2 Query: 200 TEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTL 379 +E+DL+ + G + EV + K + K +GFAFV F A A++ + K+ KGRT+ Sbjct: 125 SEDDLKAVFTHYGTVLEVNIPKKPDGKM-RGFAFVQFKNLLEAGKALKGANMKEIKGRTV 183 Query: 380 RCSLSQAKHR 409 + AK + Sbjct: 184 AVDWAVAKDK 193
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 43.1 bits (100), Expect = 5e-04 Identities = 27/80 (33%), Positives = 40/80 (50%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G LP E + + G I VR+++DK T KGF +V F D + H +L Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTD-SVHLALKL 347 Query: 350 HDKDHKGRTLRCSLSQAKHR 409 ++ + GR LR S K + Sbjct: 348 NNSELMGRKLRVMRSVNKEK 367 Score = 30.4 bits (67), Expect = 3.5 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 22/117 (18%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRL----------------MKDKETKENKGF-A 298 VF+G LP ++ L+ + G+I VR +K K + K A Sbjct: 187 VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINA 246 Query: 299 FVTFTAKDVAQHAIEELHDKDHKGRTLRCSL-----SQAKHRLFVGNVPKGLSEEEL 454 +V F + A A++ + G +R L S+ K +FVGN+P + E + Sbjct: 247 YVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAI 303
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 42.7 bits (99), Expect = 7e-04 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 25/159 (15%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P + V++ LP++ T+++L++ G+I +MKD ++ ++ F FV F + + A Sbjct: 222 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAV 280 Query: 335 AIEELH---------------DKDHKGRTLRCSLSQAK---------HRLFVGNVPKGLS 442 A+E+++ K + LR Q + L++ N+ ++ Sbjct: 281 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 340 Query: 443 EEELTSIIKGKGPGVVNIEMFKDLHN-PSRNRGFLFVEY 556 +E+L + G N+ K + N +RGF FV Y Sbjct: 341 DEKLKEMFSEYG----NVTSCKVMMNSQGLSRGFGFVAY 375
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 42.4 bits (98), Expect = 9e-04 Identities = 22/58 (37%), Positives = 33/58 (56%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 VF+G L + TE+DL G+I +RL D ++ KGF +VTF+ D A+ +E Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE 425 Score = 41.6 bits (96), Expect = 0.002 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 23/152 (15%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEEL 349 VF+G L + ++ L Q E G I R++ D ++ +KG+ +V F + A+ A+ Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 350 HDKDHKGRTLRC-----------------------SLSQAKHRLFVGNVPKGLSEEELTS 460 K+ GR + LS+ +FVGN+ +E++L++ Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384 Query: 461 IIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 G G + +I + D + R +GF +V + Sbjct: 385 AFGGCG-DIQSIRLPTDPQS-GRLKGFGYVTF 414
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 42.4 bits (98), Expect = 9e-04 Identities = 24/102 (23%), Positives = 53/102 (51%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P +F+G L D T++ LR+ + G+I ++R+ +++ + KGFAF+ F ++ + + Sbjct: 236 PPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTN 295 Query: 335 AIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTS 460 +++ + GR LR + + + V + +S +S Sbjct: 296 ELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSS 337
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 42.4 bits (98), Expect = 9e-04 Identities = 27/97 (27%), Positives = 47/97 (48%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L D TEE+L++L P GEI E + K FAF+ + A+ A + Sbjct: 113 NRLYIGNLTSDVTEEELKELFSPYGEISEAFI------NAEKNFAFLKIDYRANAERAKK 166 Query: 344 ELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEEL 454 +L + K + +R + + V N+ +S E L Sbjct: 167 DLDGRMRKNKPIRIRFAPNATTIRVKNLTPFVSNELL 203 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +2 Query: 401 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 ++RL++GN+ ++EEEL + G E+ + N +N FL ++Y Sbjct: 112 RNRLYIGNLTSDVTEEELKELFSPYG------EISEAFINAEKNFAFLKIDY 157
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 42.4 bits (98), Expect = 9e-04 Identities = 28/93 (30%), Positives = 43/93 (46%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 +G +F+ G+ + TEED+ GEI + L D+ T KG+ V + AQ A Sbjct: 71 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 130 Query: 338 IEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKG 436 +E L+ +D G+ + FV PKG Sbjct: 131 MEGLNGQDLMGQPISVDW------CFVRGPPKG 157
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 42.4 bits (98), Expect = 9e-04 Identities = 28/93 (30%), Positives = 43/93 (46%) Frame = +2 Query: 158 QGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHA 337 +G +F+ G+ + TEED+ GEI + L D+ T KG+ V + AQ A Sbjct: 71 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA 130 Query: 338 IEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKG 436 +E L+ +D G+ + FV PKG Sbjct: 131 MEGLNGQDLMGQPISVDW------CFVRGPPKG 157
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 42.4 bits (98), Expect = 9e-04 Identities = 20/47 (42%), Positives = 30/47 (63%) Frame = +2 Query: 170 VFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTF 310 +F+G L + EE L + EP G+I VR+++D +T KGFA+V F Sbjct: 281 IFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQF 327
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 42.4 bits (98), Expect = 9e-04 Identities = 20/68 (29%), Positives = 36/68 (52%) Frame = +2 Query: 149 LPPQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVA 328 +P ++F+GGLP ++ +++L G + L+KD T +KG+AF + +V Sbjct: 254 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 313 Query: 329 QHAIEELH 352 AI L+ Sbjct: 314 DQAIAGLN 321 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/51 (27%), Positives = 29/51 (56%) Frame = +2 Query: 404 HRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 556 H+LF+G +P L+++++ ++ GP + + KD ++G+ F EY Sbjct: 259 HKLFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVKD-SATGLSKGYAFCEY 307
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 42.0 bits (97), Expect = 0.001 Identities = 31/106 (29%), Positives = 48/106 (45%) Frame = +2 Query: 164 SEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIE 343 + +++G L D T+++LR++ +P GEI E+ DK F F+ A+ A Sbjct: 302 NRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKN------FTFLKVDYHPNAEKAKR 355 Query: 344 ELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGP 481 L KGR LR + L V N+ +S E L + GP Sbjct: 356 ALDGSMRKGRQLRVRFAPNATILRVSNLTPFVSNELLYKSFEIFGP 401 Score = 29.6 bits (65), Expect = 6.0 Identities = 16/53 (30%), Positives = 30/53 (56%) Frame = +2 Query: 401 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYY 559 ++RL+VGN+ ++++EL + K G E+ + N +N FL V+Y+ Sbjct: 301 RNRLYVGNLTNDITDDELREMFKPYG------EISEIFSNLDKNFTFLKVDYH 347
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 42.0 bits (97), Expect = 0.001 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 25/159 (15%) Frame = +2 Query: 155 PQGSEVFLGGLPRDTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 334 P+ + V++ LP++ E++LR+ G I +M+D ++ ++ F FV F + A Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAAS 284 Query: 335 AIEELH---------------DKDHKGRTLRCSLSQAK---------HRLFVGNVPKGLS 442 A+E+++ K + LR Q + L++ N+ + Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVD 344 Query: 443 EEELTSIIKGKGPGVVNIEMFKDLHNP-SRNRGFLFVEY 556 +E+L + G N+ K + NP +RGF FV Y Sbjct: 345 DEKLKEMFSEYG----NVTSSKVMLNPQGMSRGFGFVAY 379 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,637,221 Number of Sequences: 219361 Number of extensions: 1687184 Number of successful extensions: 7499 Number of sequences better than 10.0: 427 Number of HSP's better than 10.0 without gapping: 6246 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7243 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
