ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal11c17 |
|---|---|
| Clone Library Name | barley_pub |
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 32.0 bits (71), Expect = 1.3 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Frame = +2 Query: 218 SSPQ-AQSAPHVALFYPPYGSQQPACGNTETLSRGMVVQPAYSTISSSQRKHHEAAPVYV 394 SSPQ + ++PH + P Y PA G + P+YS S S + +P Y Sbjct: 1578 SSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPS---YSPTSPSYS 1634 Query: 395 QSSAIAVPMAEXXXXXXXXXXXXSPGNGSFAPQQCKVGPYS 517 +S P + SP + S++P P S Sbjct: 1635 PTSPSYSPTSP---SYSPTSPSYSPSSPSYSPSSPSYSPSS 1672
>XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1)| (Strand-exchange protein 1 homolog) (Protein Dhm2) Length = 1719 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Frame = +2 Query: 170 YHNMQQVPAQMVQLQTSSPQAQSAPHVALFYPPYGSQ------QPACGNTETLSRGMVVQ 331 + N + +Q LQT+ P + A + P S QP + ET S+G V Sbjct: 1633 FENKEAQSSQATPLQTNKPGSSEATKMTPQESPPASSSSSQAAQPVSSHVETASQGHVGS 1692 Query: 332 PAYSTISSSQRKHHEAA 382 S SSS+RK + A Sbjct: 1693 QPRSAPSSSKRKSRKLA 1709
>F19A4_MACFA (Q9N0D3) Protein FAM19A4 precursor (Chemokine-like protein TAFA-4)| Length = 140 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Frame = -3 Query: 551 IRC-CRPGHRPGLNRVQPCIVE----VQMSHCRANETAGSAGAGCDVLP*EQQWRC 399 ++C C PG G R QP VE +Q C N G C VLP W C Sbjct: 74 VKCSCFPGQVAGTTRAQPSCVEASIVIQKWWCHMNPCL--EGEDCKVLPDYSGWSC 127
>F19A4_HUMAN (Q96LR4) Protein FAM19A4 precursor (Chemokine-like protein TAFA-4)| Length = 140 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Frame = -3 Query: 551 IRC-CRPGHRPGLNRVQPCIVE----VQMSHCRANETAGSAGAGCDVLP*EQQWRC 399 ++C C PG G R QP VE +Q C N G C VLP W C Sbjct: 74 VKCSCFPGQVAGTTRAQPSCVEASIVIQKWWCHMNPCL--EGEDCKVLPDYSGWSC 127
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 30.8 bits (68), Expect = 3.0 Identities = 40/164 (24%), Positives = 46/164 (28%), Gaps = 9/164 (5%) Frame = +2 Query: 71 IQAQHHWQHQTVQDVHSXXXXXXXXXXXXXXXXYHN----MQQVPAQMVQLQTSSPQAQS 238 +Q Q H QHQ Q QQ P Q QLQ PQ Q Sbjct: 1324 LQQQQHQQHQHQQHPQQPQQQGQVQQQVVSQQQQQQHQPQQQQQPQQQQQLQQQQPQQQQ 1383 Query: 239 APHVALFYPPYGSQQPACGNTETLSRGMVVQPAYSTISSSQRKHHEAA-----PVYVQSS 403 H + P QQP T V Q + + S VY+ S Sbjct: 1384 PQHQQVQTPQPAQQQPQQPQV-TQQPPPVPQVQINGVQGSPTPMRPVVNSLNNGVYMSSV 1442 Query: 404 AIAVPMAEXXXXXXXXXXXXSPGNGSFAPQQCKVGPYSVQGGAQ 535 + MA SPG G P P Q AQ Sbjct: 1443 SAQAMMASFNAANSVAGMVTSPGAGLSMPMLPAGSPRGPQIPAQ 1486
>ESC1_SCHPO (Q04635) Protein esc1| Length = 413 Score = 30.4 bits (67), Expect = 3.9 Identities = 32/136 (23%), Positives = 44/136 (32%), Gaps = 1/136 (0%) Frame = +2 Query: 176 NMQQVPAQMVQLQTSSPQAQSAPHVALFYPPYGSQQ-PACGNTETLSRGMVVQPAYSTIS 352 +MQ P + L+ S SAP + PY QQ P N+ L ST S Sbjct: 8 SMQPTPTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVPLTHNSYPL----------STPS 57 Query: 353 SSQRKHHEAAPVYVQSSAIAVPMAEXXXXXXXXXXXXSPGNGSFAPQQCKVGPYSVQGGA 532 S Q P+ + P + S A V G + Sbjct: 58 SFQHGQTRLPPINCLAEPFNRPQPWHSNSAAPASSSPTSATLSTAAHPVHTNAAQVAGSS 117 Query: 533 QAYNTVYGSPPNSAAT 580 +Y VY PP ++ T Sbjct: 118 SSY--VYSVPPTNSTT 131
>F19A4_MOUSE (Q7TPG5) Protein FAM19A4 precursor (Chemokine-like protein TAFA-4)| Length = 135 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Frame = -3 Query: 551 IRC-CRPGHRPGLNRVQPCIVE----VQMSHCRANETAGSAGAGCDVLP*EQQWRC 399 ++C C PG G R QP VE ++ C N G C VLP W C Sbjct: 69 VKCSCFPGQVAGTTRAQPSCVEAAIVIEKWWCHMNPCL--EGEDCKVLPDSSGWSC 122
>GIDB_XANCP (Q8P3N0) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 212 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 429 ITSSTSRPSSFIRPAMAHLHLNNARLDPIQSRAVPRP 539 + S + + F+R A+ HL L NAR+ ++ AV P Sbjct: 101 LVESNGKKARFMREALRHLALGNARVAEARAEAVDEP 137
>GIDB_XANC8 (Q4UP54) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 212 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 429 ITSSTSRPSSFIRPAMAHLHLNNARLDPIQSRAVPRP 539 + S + + F+R A+ HL L NAR+ ++ AV P Sbjct: 101 LVESNGKKARFMREALRHLALGNARVAEARAEAVDEP 137
>NOTC1_HUMAN (P46531) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| (hN1) (Translocation-associated notch protein TAN-1) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2556 Score = 29.6 bits (65), Expect = 6.7 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +1 Query: 448 DPAVSFARQWLICTSTMQGWTLFSPGRC 531 D +++F W CT ++Q W FS G C Sbjct: 1479 DCSLNFNDPWKNCTQSLQCWKYFSDGHC 1506
>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 29.6 bits (65), Expect = 6.7 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +1 Query: 448 DPAVSFARQWLICTSTMQGWTLFSPGRC 531 D +++F W CT ++Q W FS G C Sbjct: 1478 DCSLNFNDPWKNCTQSLQCWKYFSDGHC 1505
>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 29.6 bits (65), Expect = 6.7 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +1 Query: 448 DPAVSFARQWLICTSTMQGWTLFSPGRC 531 D +++F W CT ++Q W FS G C Sbjct: 1478 DCSLNFNDPWKNCTQSLQCWKYFSDGHC 1505
>TLE3_HUMAN (Q04726) Transducin-like enhancer protein 3 (ESG3)| Length = 772 Score = 29.3 bits (64), Expect = 8.7 Identities = 22/75 (29%), Positives = 34/75 (45%) Frame = +2 Query: 182 QQVPAQMVQLQTSSPQAQSAPHVALFYPPYGSQQPACGNTETLSRGMVVQPAYSTISSSQ 361 QQ+ AQ + T P Q PH + PP G ++ L+ G + A+ T+ + Sbjct: 126 QQLQAQHLSHATHGPPVQLPPHPSGLQPP-GIPPVTGSSSGLLALGALGSQAHLTV-KDE 183 Query: 362 RKHHEAAPVYVQSSA 406 + HHE +SSA Sbjct: 184 KNHHELDHRERESSA 198
>NOTCH_XENLA (P21783) Neurogenic locus notch protein homolog precursor (XOTCH| protein) Length = 2524 Score = 29.3 bits (64), Expect = 8.7 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +1 Query: 448 DPAVSFARQWLICTSTMQGWTLFSPGRC 531 D +++F W CT ++Q W F+ G+C Sbjct: 1476 DCSLNFNDPWKNCTQSLQCWKYFNDGKC 1503 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,833,823 Number of Sequences: 219361 Number of extensions: 1772316 Number of successful extensions: 5178 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4944 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5175 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
