ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal11c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome... 107 4e-20
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
3ref|XM_505099.1| Yarrowia lipolytica CLIB122, YALI0F06864g predi... 46 0.13
4emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 46 0.13
5ref|XM_362886.1| Magnaporthe grisea 70-15 predicted protein (MG0... 42 2.0
6ref|NM_119690.1| Arabidopsis thaliana unknown protein AT4G35240 ... 40 8.0
7ref|NM_001009650.1| Rattus norvegicus trace amine associated rec... 40 8.0
8gb|AC073297.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 8.0
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.0
10gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, comple... 40 8.0
11gb|DQ083333.1| Danio rerio iron regulatory protein 2 mRNA, parti... 40 8.0
12emb|CR383667.11| Zebrafish DNA sequence from clone CH211-229P19 ... 40 8.0
13emb|AL356218.22| Human DNA sequence from clone RP11-311H10 on ch... 40 8.0
14emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, ... 40 8.0
15emb|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome 4, B... 40 8.0
16emb|AJ243767.1|NCO243767 Notothenia coriiceps mRNA for fast myos... 40 8.0
17emb|BX296538.9| Zebrafish DNA sequence from clone DKEY-275P19 in... 40 8.0
18gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genom... 40 8.0
19ref|NM_001014186.1| Rattus norvegicus similar to ORC5-related pr... 40 8.0
20emb|CR389803.1| Gallus gallus finished cDNA, clone ChEST273n21 40 8.0
21gb|DQ083949.1| Homo sapiens aquaporin 3 (AQP3) gene, complete cds 40 8.0
22gb|AC092226.1|AC092226 Drosophila melanogaster, chromosome 2L, r... 40 8.0
23gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 8.0
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
25ref|XM_579307.1| PREDICTED: Rattus norvegicus trace amine associ... 40 8.0
26gb|BC088447.1| Rattus norvegicus similar to ORC5-related protein... 40 8.0
27gb|AY702318.1| Rattus norvegicus trace amine associated receptor... 40 8.0
28gb|AE003630.2| Drosophila melanogaster chromosome 2L, section 39... 40 8.0
29gb|AC005117.1|AC005117 Drosophila melanogaster, chromosome 2L, r... 40 8.0

>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06,
             complete sequence
          Length = 139139

 Score =  107 bits (54), Expect = 4e-20
 Identities = 210/262 (80%)
 Strand = Plus / Plus

                                                                         
Query: 140   ccacagccccaggtggcacaacagcagcagtaccacaacatgcaacaagttccagctcag 199
             |||||||| ||||| |  |||||||| || ||| |||| || || ||||||||||| |||
Sbjct: 91189 ccacagccacaggttgtgcaacagcaacattacaacaatattcagcaagttccagcacag 91248

                                                                         
Query: 200   atggttcaactgcaaacatcttctccgcaggcccaaagtgcgcctcatgtcgccctgttc 259
             || |||||| ||||||| |||||||| ||||| |||||||| || |||||| | ||||| 
Sbjct: 91249 atagttcaaatgcaaacttcttctccacaggctcaaagtgcaccacatgtcacactgttg 91308

                                                                         
Query: 260   tatcctccttacggatcccaacagcccgcatgtggtaacaccgagacactttctagaggc 319
             || |||||||| ||||| ||||| || || |||| ||| |  ||| |||  ||  || ||
Sbjct: 91309 taccctccttatggatctcaacaacctgcctgtgctaatagtgagccacgctcgcgaagc 91368

                                                                         
Query: 320   atggttgtgcagcctgcctattctacgatctcttcttcccagcgaaagcatcatgaagct 379
             |||| | |||||||| |||| ||||| || || || |||||  | || ||||||||||  
Sbjct: 91369 atggctatgcagccttcctactctacaatttcctcgtcccaaaggaatcatcatgaagtc 91428

                                   
Query: 380   gctcctgtttacgtgcaaagca 401
             ||||||||||| ||||||||||
Sbjct: 91429 gctcctgtttatgtgcaaagca 91450



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  107 bits (54), Expect = 4e-20
 Identities = 210/262 (80%)
 Strand = Plus / Plus

                                                                            
Query: 140      ccacagccccaggtggcacaacagcagcagtaccacaacatgcaacaagttccagctcag 199
                |||||||| ||||| |  |||||||| || ||| |||| || || ||||||||||| |||
Sbjct: 27726631 ccacagccacaggttgtgcaacagcaacattacaacaatattcagcaagttccagcacag 27726690

                                                                            
Query: 200      atggttcaactgcaaacatcttctccgcaggcccaaagtgcgcctcatgtcgccctgttc 259
                || |||||| ||||||| |||||||| ||||| |||||||| || |||||| | ||||| 
Sbjct: 27726691 atagttcaaatgcaaacttcttctccacaggctcaaagtgcaccacatgtcacactgttg 27726750

                                                                            
Query: 260      tatcctccttacggatcccaacagcccgcatgtggtaacaccgagacactttctagaggc 319
                || |||||||| ||||| ||||| || || |||| ||| |  ||| |||  ||  || ||
Sbjct: 27726751 taccctccttatggatctcaacaacctgcctgtgctaatagtgagccacgctcgcgaagc 27726810

                                                                            
Query: 320      atggttgtgcagcctgcctattctacgatctcttcttcccagcgaaagcatcatgaagct 379
                |||| | |||||||| |||| ||||| || || || |||||  | || ||||||||||  
Sbjct: 27726811 atggctatgcagccttcctactctacaatttcctcgtcccaaaggaatcatcatgaagtc 27726870

                                      
Query: 380      gctcctgtttacgtgcaaagca 401
                ||||||||||| ||||||||||
Sbjct: 27726871 gctcctgtttatgtgcaaagca 27726892



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>ref|XM_505099.1| Yarrowia lipolytica CLIB122, YALI0F06864g predicted mRNA
          Length = 2043

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 431  cacatccagcaccagcagacccagcag 457
            |||| ||||||||||||||||||||||
Sbjct: 1693 cacaaccagcaccagcagacccagcag 1719



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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 431     cacatccagcaccagcagacccagcag 457
               |||| ||||||||||||||||||||||
Sbjct: 1016589 cacaaccagcaccagcagacccagcag 1016615



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>ref|XM_362886.1| Magnaporthe grisea 70-15 predicted protein (MG08551.4) partial cds
          Length = 1752

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 157 acaacagcagcagtaccacaacatg 181
           |||||||||||||||| ||||||||
Sbjct: 198 acaacagcagcagtacaacaacatg 222



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>ref|NM_119690.1| Arabidopsis thaliana unknown protein AT4G35240 mRNA, complete cds
          Length = 2487

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  aggtggcacaacagcagcag 169
            ||||||||||||||||||||
Sbjct: 1410 aggtggcacaacagcagcag 1391



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>ref|NM_001009650.1| Rattus norvegicus trace amine associated receptor 5 (Taar5), mRNA
          Length = 1014

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 437 cagcaccagcagacccagca 456
           ||||||||||||||||||||
Sbjct: 264 cagcaccagcagacccagca 245



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>gb|AC073297.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-167N24, complete
             sequence
          Length = 96335

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   aggtggcacaacagcagcag 169
             ||||||||||||||||||||
Sbjct: 25730 aggtggcacaacagcagcag 25711



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 131      caacaacaaccacagcccca 150
                ||||||||||||||||||||
Sbjct: 23753649 caacaacaaccacagcccca 23753668



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>gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, complete sequence
          Length = 104859

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   agttccagctcagatggttc 206
             ||||||||||||||||||||
Sbjct: 10796 agttccagctcagatggttc 10815



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>gb|DQ083333.1| Danio rerio iron regulatory protein 2 mRNA, partial cds
          Length = 740

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 145 gccccaggtggcacaacagcagcagtac 172
           ||||| ||||||| ||||||||||||||
Sbjct: 580 gcccctggtggcagaacagcagcagtac 607



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>emb|CR383667.11| Zebrafish DNA sequence from clone CH211-229P19 in linkage group 10,
             complete sequence
          Length = 121560

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   acaacatgcaacaagttcca 193
             ||||||||||||||||||||
Sbjct: 86467 acaacatgcaacaagttcca 86486



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>emb|AL356218.22| Human DNA sequence from clone RP11-311H10 on chromosome 9 Contains the
             3' end of the NFX1 gene for X-box binding nuclear
             transcription factor 1,  the AQP7 and AQP3 genes for
             aquaporin 7 and 3, a novel gene, the gene for nucleolar
             RNA-associated protein alpha, beta and gamma and a CpG
             island, complete sequence
          Length = 142839

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   acagtccaggatgttcactc 120
             ||||||||||||||||||||
Sbjct: 83194 acagtccaggatgttcactc 83213



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>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83
          Length = 197859

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   aggtggcacaacagcagcag 169
             ||||||||||||||||||||
Sbjct: 27365 aggtggcacaacagcagcag 27384



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>emb|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome 4, BAC clone  F23E12 (ESSA project)
          Length = 86710

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   aggtggcacaacagcagcag 169
             ||||||||||||||||||||
Sbjct: 75986 aggtggcacaacagcagcag 75967



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>emb|AJ243767.1|NCO243767 Notothenia coriiceps mRNA for fast myosin heavy chain (MyoHC-A1 gene)
          Length = 5957

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  cagcagacccagcagtttca 462
            ||||||||||||||||||||
Sbjct: 1936 cagcagacccagcagtttca 1917



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>emb|BX296538.9| Zebrafish DNA sequence from clone DKEY-275P19 in linkage group 25,
             complete sequence
          Length = 192787

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 145   gccccaggtggcacaacagcagcagtac 172
             ||||| ||||||| ||||||||||||||
Sbjct: 68787 gcccctggtggcagaacagcagcagtac 68814



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>gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genomic sequence, complete
             sequence
          Length = 120116

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   caacaacaaccacagcccca 150
             ||||||||||||||||||||
Sbjct: 85703 caacaacaaccacagcccca 85722



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>ref|NM_001014186.1| Rattus norvegicus similar to ORC5-related protein (LOC362304), mRNA
          Length = 2115

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  caactgcaaacatcttctcc 225
            ||||||||||||||||||||
Sbjct: 1204 caactgcaaacatcttctcc 1223



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>emb|CR389803.1| Gallus gallus finished cDNA, clone ChEST273n21
          Length = 1218

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 157 acaacagcagcagtaccaca 176
           ||||||||||||||||||||
Sbjct: 214 acaacagcagcagtaccaca 195



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>gb|DQ083949.1| Homo sapiens aquaporin 3 (AQP3) gene, complete cds
          Length = 13709

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   acagtccaggatgttcactc 120
             ||||||||||||||||||||
Sbjct: 12864 acagtccaggatgttcactc 12845



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>gb|AC092226.1|AC092226 Drosophila melanogaster, chromosome 2L, region 32A-32B, BAC clone
             BACR20O15, complete sequence
          Length = 169210

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   gcaaggcaacaacaaccaca 144
             ||||||||||||||||||||
Sbjct: 88722 gcaaggcaacaacaaccaca 88703



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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 361     gcgaaagcatcatgaagctg 380
               ||||||||||||||||||||
Sbjct: 2010967 gcgaaagcatcatgaagctg 2010948



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 131      caacaacaaccacagcccca 150
                ||||||||||||||||||||
Sbjct: 23746677 caacaacaaccacagcccca 23746696



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>ref|XM_579307.1| PREDICTED: Rattus norvegicus trace amine associated receptor 5
           (Taar5), mRNA
          Length = 1014

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 437 cagcaccagcagacccagca 456
           ||||||||||||||||||||
Sbjct: 264 cagcaccagcagacccagca 245



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>gb|BC088447.1| Rattus norvegicus similar to ORC5-related protein, mRNA (cDNA clone
            MGC:95091 IMAGE:7126516), complete cds
          Length = 2115

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  caactgcaaacatcttctcc 225
            ||||||||||||||||||||
Sbjct: 1204 caactgcaaacatcttctcc 1223



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>gb|AY702318.1| Rattus norvegicus trace amine associated receptor 5 (Taar5) gene,
           complete cds
          Length = 1014

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 437 cagcaccagcagacccagca 456
           ||||||||||||||||||||
Sbjct: 264 cagcaccagcagacccagca 245



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>gb|AE003630.2| Drosophila melanogaster chromosome 2L, section 39 of 83 of the complete
              sequence
          Length = 289460

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    gcaaggcaacaacaaccaca 144
              ||||||||||||||||||||
Sbjct: 282320 gcaaggcaacaacaaccaca 282301



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>gb|AC005117.1|AC005117 Drosophila melanogaster, chromosome 2L, region 32D1-32D2, P1 clone
             DS04313, complete sequence
          Length = 69019

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   gcaaggcaacaacaaccaca 144
             ||||||||||||||||||||
Sbjct: 24292 gcaaggcaacaacaaccaca 24273


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,526,611
Number of Sequences: 3902068
Number of extensions: 4526611
Number of successful extensions: 86673
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86509
Number of HSP's gapped (non-prelim): 164
length of query: 586
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 563
effective length of database: 17,143,297,704
effective search space: 9651676607352
effective search space used: 9651676607352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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