| Clone Name | baal11c17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 107 bits (54), Expect = 4e-20 Identities = 210/262 (80%) Strand = Plus / Plus Query: 140 ccacagccccaggtggcacaacagcagcagtaccacaacatgcaacaagttccagctcag 199 |||||||| ||||| | |||||||| || ||| |||| || || ||||||||||| ||| Sbjct: 91189 ccacagccacaggttgtgcaacagcaacattacaacaatattcagcaagttccagcacag 91248 Query: 200 atggttcaactgcaaacatcttctccgcaggcccaaagtgcgcctcatgtcgccctgttc 259 || |||||| ||||||| |||||||| ||||| |||||||| || |||||| | ||||| Sbjct: 91249 atagttcaaatgcaaacttcttctccacaggctcaaagtgcaccacatgtcacactgttg 91308 Query: 260 tatcctccttacggatcccaacagcccgcatgtggtaacaccgagacactttctagaggc 319 || |||||||| ||||| ||||| || || |||| ||| | ||| ||| || || || Sbjct: 91309 taccctccttatggatctcaacaacctgcctgtgctaatagtgagccacgctcgcgaagc 91368 Query: 320 atggttgtgcagcctgcctattctacgatctcttcttcccagcgaaagcatcatgaagct 379 |||| | |||||||| |||| ||||| || || || ||||| | || |||||||||| Sbjct: 91369 atggctatgcagccttcctactctacaatttcctcgtcccaaaggaatcatcatgaagtc 91428 Query: 380 gctcctgtttacgtgcaaagca 401 ||||||||||| |||||||||| Sbjct: 91429 gctcctgtttatgtgcaaagca 91450
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 107 bits (54), Expect = 4e-20 Identities = 210/262 (80%) Strand = Plus / Plus Query: 140 ccacagccccaggtggcacaacagcagcagtaccacaacatgcaacaagttccagctcag 199 |||||||| ||||| | |||||||| || ||| |||| || || ||||||||||| ||| Sbjct: 27726631 ccacagccacaggttgtgcaacagcaacattacaacaatattcagcaagttccagcacag 27726690 Query: 200 atggttcaactgcaaacatcttctccgcaggcccaaagtgcgcctcatgtcgccctgttc 259 || |||||| ||||||| |||||||| ||||| |||||||| || |||||| | ||||| Sbjct: 27726691 atagttcaaatgcaaacttcttctccacaggctcaaagtgcaccacatgtcacactgttg 27726750 Query: 260 tatcctccttacggatcccaacagcccgcatgtggtaacaccgagacactttctagaggc 319 || |||||||| ||||| ||||| || || |||| ||| | ||| ||| || || || Sbjct: 27726751 taccctccttatggatctcaacaacctgcctgtgctaatagtgagccacgctcgcgaagc 27726810 Query: 320 atggttgtgcagcctgcctattctacgatctcttcttcccagcgaaagcatcatgaagct 379 |||| | |||||||| |||| ||||| || || || ||||| | || |||||||||| Sbjct: 27726811 atggctatgcagccttcctactctacaatttcctcgtcccaaaggaatcatcatgaagtc 27726870 Query: 380 gctcctgtttacgtgcaaagca 401 ||||||||||| |||||||||| Sbjct: 27726871 gctcctgtttatgtgcaaagca 27726892
>ref|XM_505099.1| Yarrowia lipolytica CLIB122, YALI0F06864g predicted mRNA Length = 2043 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 431 cacatccagcaccagcagacccagcag 457 |||| |||||||||||||||||||||| Sbjct: 1693 cacaaccagcaccagcagacccagcag 1719
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 431 cacatccagcaccagcagacccagcag 457 |||| |||||||||||||||||||||| Sbjct: 1016589 cacaaccagcaccagcagacccagcag 1016615
>ref|XM_362886.1| Magnaporthe grisea 70-15 predicted protein (MG08551.4) partial cds Length = 1752 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 157 acaacagcagcagtaccacaacatg 181 |||||||||||||||| |||||||| Sbjct: 198 acaacagcagcagtacaacaacatg 222
>ref|NM_119690.1| Arabidopsis thaliana unknown protein AT4G35240 mRNA, complete cds Length = 2487 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 aggtggcacaacagcagcag 169 |||||||||||||||||||| Sbjct: 1410 aggtggcacaacagcagcag 1391
>ref|NM_001009650.1| Rattus norvegicus trace amine associated receptor 5 (Taar5), mRNA Length = 1014 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 cagcaccagcagacccagca 456 |||||||||||||||||||| Sbjct: 264 cagcaccagcagacccagca 245
>gb|AC073297.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-167N24, complete sequence Length = 96335 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 aggtggcacaacagcagcag 169 |||||||||||||||||||| Sbjct: 25730 aggtggcacaacagcagcag 25711
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 caacaacaaccacagcccca 150 |||||||||||||||||||| Sbjct: 23753649 caacaacaaccacagcccca 23753668
>gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, complete sequence Length = 104859 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 agttccagctcagatggttc 206 |||||||||||||||||||| Sbjct: 10796 agttccagctcagatggttc 10815
>gb|DQ083333.1| Danio rerio iron regulatory protein 2 mRNA, partial cds Length = 740 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 gccccaggtggcacaacagcagcagtac 172 ||||| ||||||| |||||||||||||| Sbjct: 580 gcccctggtggcagaacagcagcagtac 607
>emb|CR383667.11| Zebrafish DNA sequence from clone CH211-229P19 in linkage group 10, complete sequence Length = 121560 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 acaacatgcaacaagttcca 193 |||||||||||||||||||| Sbjct: 86467 acaacatgcaacaagttcca 86486
>emb|AL356218.22| Human DNA sequence from clone RP11-311H10 on chromosome 9 Contains the 3' end of the NFX1 gene for X-box binding nuclear transcription factor 1, the AQP7 and AQP3 genes for aquaporin 7 and 3, a novel gene, the gene for nucleolar RNA-associated protein alpha, beta and gamma and a CpG island, complete sequence Length = 142839 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 acagtccaggatgttcactc 120 |||||||||||||||||||| Sbjct: 83194 acagtccaggatgttcactc 83213
>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83 Length = 197859 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 aggtggcacaacagcagcag 169 |||||||||||||||||||| Sbjct: 27365 aggtggcacaacagcagcag 27384
>emb|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project) Length = 86710 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 aggtggcacaacagcagcag 169 |||||||||||||||||||| Sbjct: 75986 aggtggcacaacagcagcag 75967
>emb|AJ243767.1|NCO243767 Notothenia coriiceps mRNA for fast myosin heavy chain (MyoHC-A1 gene) Length = 5957 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cagcagacccagcagtttca 462 |||||||||||||||||||| Sbjct: 1936 cagcagacccagcagtttca 1917
>emb|BX296538.9| Zebrafish DNA sequence from clone DKEY-275P19 in linkage group 25, complete sequence Length = 192787 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 gccccaggtggcacaacagcagcagtac 172 ||||| ||||||| |||||||||||||| Sbjct: 68787 gcccctggtggcagaacagcagcagtac 68814
>gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genomic sequence, complete sequence Length = 120116 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 caacaacaaccacagcccca 150 |||||||||||||||||||| Sbjct: 85703 caacaacaaccacagcccca 85722
>ref|NM_001014186.1| Rattus norvegicus similar to ORC5-related protein (LOC362304), mRNA Length = 2115 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 caactgcaaacatcttctcc 225 |||||||||||||||||||| Sbjct: 1204 caactgcaaacatcttctcc 1223
>emb|CR389803.1| Gallus gallus finished cDNA, clone ChEST273n21 Length = 1218 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acaacagcagcagtaccaca 176 |||||||||||||||||||| Sbjct: 214 acaacagcagcagtaccaca 195
>gb|DQ083949.1| Homo sapiens aquaporin 3 (AQP3) gene, complete cds Length = 13709 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 acagtccaggatgttcactc 120 |||||||||||||||||||| Sbjct: 12864 acagtccaggatgttcactc 12845
>gb|AC092226.1|AC092226 Drosophila melanogaster, chromosome 2L, region 32A-32B, BAC clone BACR20O15, complete sequence Length = 169210 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gcaaggcaacaacaaccaca 144 |||||||||||||||||||| Sbjct: 88722 gcaaggcaacaacaaccaca 88703
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gcgaaagcatcatgaagctg 380 |||||||||||||||||||| Sbjct: 2010967 gcgaaagcatcatgaagctg 2010948
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 caacaacaaccacagcccca 150 |||||||||||||||||||| Sbjct: 23746677 caacaacaaccacagcccca 23746696
>ref|XM_579307.1| PREDICTED: Rattus norvegicus trace amine associated receptor 5 (Taar5), mRNA Length = 1014 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 cagcaccagcagacccagca 456 |||||||||||||||||||| Sbjct: 264 cagcaccagcagacccagca 245
>gb|BC088447.1| Rattus norvegicus similar to ORC5-related protein, mRNA (cDNA clone MGC:95091 IMAGE:7126516), complete cds Length = 2115 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 caactgcaaacatcttctcc 225 |||||||||||||||||||| Sbjct: 1204 caactgcaaacatcttctcc 1223
>gb|AY702318.1| Rattus norvegicus trace amine associated receptor 5 (Taar5) gene, complete cds Length = 1014 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 cagcaccagcagacccagca 456 |||||||||||||||||||| Sbjct: 264 cagcaccagcagacccagca 245
>gb|AE003630.2| Drosophila melanogaster chromosome 2L, section 39 of 83 of the complete sequence Length = 289460 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gcaaggcaacaacaaccaca 144 |||||||||||||||||||| Sbjct: 282320 gcaaggcaacaacaaccaca 282301
>gb|AC005117.1|AC005117 Drosophila melanogaster, chromosome 2L, region 32D1-32D2, P1 clone DS04313, complete sequence Length = 69019 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 gcaaggcaacaacaaccaca 144 |||||||||||||||||||| Sbjct: 24292 gcaaggcaacaacaaccaca 24273 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,526,611 Number of Sequences: 3902068 Number of extensions: 4526611 Number of successful extensions: 86673 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86509 Number of HSP's gapped (non-prelim): 164 length of query: 586 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 563 effective length of database: 17,143,297,704 effective search space: 9651676607352 effective search space used: 9651676607352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)