ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal11b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC156164.2| Mus musculus BAC clone RP24-75M13 from chromosome... 44 0.56
2gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 42 2.2
3gb|AC016737.8| Homo sapiens BAC clone RP11-394I13 from 2, comple... 42 2.2
4gb|AC084596.1|CBRG42F08 Caenorhabditis briggsae cosmid G42F08, c... 42 2.2
5gb|AY105729.1| Zea mays PCO132095 mRNA sequence 42 2.2
6gb|AC102303.10| Mus musculus chromosome 1, clone RP24-403I11, co... 40 8.8
7gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 40 8.8
8gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete se... 40 8.8
9gb|AC165351.2| Mus musculus BAC clone RP23-197K16 from chromosom... 40 8.8
10gb|AC147359.2| Xenopus tropicalis clone CH216-79G22, complete se... 40 8.8
11gb|AC124499.3| Mus musculus BAC clone RP24-68G23 from chromosome... 40 8.8
12emb|AL391336.19| Human DNA sequence from clone RP11-524K14 on ch... 40 8.8
13gb|AC008040.7| Homo sapiens 3 BAC RP11-379K17 (Roswell Park Canc... 40 8.8
14gb|AC138581.23| Pan troglodytes clone ptb-142b7, complete sequence 40 8.8
15gb|AC157786.7| Mus musculus chromosome 1, clone RP23-280O23, com... 40 8.8
16gb|AC006285.13| Homo sapiens chromosome 22 clone p1087l10 map 22... 40 8.8
17gb|AC016025.14| Homo sapiens chromosome 22 clone b342k14 map 22q... 40 8.8
18gb|AC025040.7|AC025040 Homo sapiens chromosome 15 clone CTD-2647... 40 8.8
19gb|AC068143.4|T2D23 Sequence of BAC T2D23 from Arabidopsis thali... 40 8.8
20emb|AM233362.1| Francisella tularensis subsp. holarctica strain ... 40 8.8
21emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4... 40 8.8
22gb|AC159275.6| Mus musculus BAC clone RP23-367C13 from chromosom... 40 8.8
23gb|AF086412.1|HUMZD77D08 Homo sapiens full length insert cDNA cl... 40 8.8
24gb|AC139323.4| Mus musculus BAC clone RP24-383P22 from 13, compl... 40 8.8
25gb|AC126450.4| Mus musculus BAC clone RP23-379J7 from 3, complet... 40 8.8

>gb|AC156164.2| Mus musculus BAC clone RP24-75M13 from chromosome 9, complete sequence
          Length = 183015

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 147    agtgtggcttttttccctctcc 168
              ||||||||||||||||||||||
Sbjct: 151295 agtgtggcttttttccctctcc 151274



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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 166    tccttccgtggcaacgcacgg 186
              |||||||||||||||||||||
Sbjct: 316897 tccttccgtggcaacgcacgg 316877



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>gb|AC016737.8| Homo sapiens BAC clone RP11-394I13 from 2, complete sequence
          Length = 196085

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 152   ggcttttttccctctccttcc 172
             |||||||||||||||||||||
Sbjct: 80219 ggcttttttccctctccttcc 80199



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>gb|AC084596.1|CBRG42F08 Caenorhabditis briggsae cosmid G42F08, complete sequence
          Length = 44999

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 563 agcattccctgcaattcttgatttg 587
           ||||||| |||||||||||||||||
Sbjct: 260 agcattctctgcaattcttgatttg 284



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>gb|AY105729.1| Zea mays PCO132095 mRNA sequence
          Length = 759

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 168 cttccgtggcaacgcacgggc 188
           |||||||||||||||||||||
Sbjct: 514 cttccgtggcaacgcacgggc 494



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>gb|AC102303.10| Mus musculus chromosome 1, clone RP24-403I11, complete sequence
          Length = 162813

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 537   catttcagagcctggacata 556
             ||||||||||||||||||||
Sbjct: 25145 catttcagagcctggacata 25126



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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   cttccgtggcaacgcacggg 187
             ||||||||||||||||||||
Sbjct: 34458 cttccgtggcaacgcacggg 34439



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>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence
          Length = 285444

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    tccgtggcaacgcacgggcg 189
              ||||||||||||||||||||
Sbjct: 202511 tccgtggcaacgcacgggcg 202530



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>gb|AC165351.2| Mus musculus BAC clone RP23-197K16 from chromosome 12, complete
             sequence
          Length = 211170

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 537   catttcagagcctggacataaatttcag 564
             ||||||||  ||||||||||||||||||
Sbjct: 25386 catttcagttcctggacataaatttcag 25413



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>gb|AC147359.2| Xenopus tropicalis clone CH216-79G22, complete sequence
          Length = 165587

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 155   ttttttccctctccttccgtggca 178
             |||||||||||||||||| |||||
Sbjct: 66583 ttttttccctctccttccctggca 66560



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>gb|AC124499.3| Mus musculus BAC clone RP24-68G23 from chromosome 12, complete sequence
          Length = 209276

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 537    catttcagagcctggacataaatttcag 564
              ||||||||  ||||||||||||||||||
Sbjct: 146692 catttcagttcctggacataaatttcag 146665



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>emb|AL391336.19| Human DNA sequence from clone RP11-524K14 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 118331

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 370   actttgagaggctgaactgaagaa 393
             ||||||| ||||||||||||||||
Sbjct: 81765 actttgacaggctgaactgaagaa 81742



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>gb|AC008040.7| Homo sapiens 3 BAC RP11-379K17 (Roswell Park Cancer Institue Human BAC
              Library) complete sequence
          Length = 204917

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    attttctatgtgattagtgt 151
              ||||||||||||||||||||
Sbjct: 103787 attttctatgtgattagtgt 103806



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>gb|AC138581.23| Pan troglodytes clone ptb-142b7, complete sequence
          Length = 199928

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 147   agtgtggcttttttccctctcctt 170
             ||||||| ||||||||||||||||
Sbjct: 29048 agtgtgggttttttccctctcctt 29025



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>gb|AC157786.7| Mus musculus chromosome 1, clone RP23-280O23, complete sequence
          Length = 205264

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 537   catttcagagcctggacata 556
             ||||||||||||||||||||
Sbjct: 97966 catttcagagcctggacata 97985



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>gb|AC006285.13| Homo sapiens chromosome 22 clone p1087l10 map 22q11, complete sequence
          Length = 150172

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 147   agtgtggcttttttccctctcctt 170
             ||||||| ||||||||||||||||
Sbjct: 94509 agtgtggtttttttccctctcctt 94532



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>gb|AC016025.14| Homo sapiens chromosome 22 clone b342k14 map 22q11, complete sequence
          Length = 180269

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 147   agtgtggcttttttccctctcctt 170
             ||||||| ||||||||||||||||
Sbjct: 50307 agtgtggtttttttccctctcctt 50330



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>gb|AC025040.7|AC025040 Homo sapiens chromosome 15 clone CTD-2647E9 map 15q21.1, complete
             sequence
          Length = 173394

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   gcaagtgattttttgttctt 314
             ||||||||||||||||||||
Sbjct: 25044 gcaagtgattttttgttctt 25025



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>gb|AC068143.4|T2D23 Sequence of BAC T2D23 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 41039

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 62    acacatgcaagctaacattgatcaatta 89
             |||||||||||| ||||||||| |||||
Sbjct: 10321 acacatgcaagcaaacattgatgaatta 10348



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>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome
          Length = 1895994

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    taaacatattttctatgtga 144
              ||||||||||||||||||||
Sbjct: 813938 taaacatattttctatgtga 813957



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>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome
          Length = 1892819

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 125     taaacatattttctatgtga 144
               ||||||||||||||||||||
Sbjct: 1141544 taaacatattttctatgtga 1141525



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>gb|AC159275.6| Mus musculus BAC clone RP23-367C13 from chromosome 8, complete sequence
          Length = 195034

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    tttttgttcttattgacgac 323
              ||||||||||||||||||||
Sbjct: 167421 tttttgttcttattgacgac 167440



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>gb|AF086412.1|HUMZD77D08 Homo sapiens full length insert cDNA clone ZD77D08
          Length = 538

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 147 agtgtggcttttttccctctcctt 170
           ||||||| ||||||||||||||||
Sbjct: 141 agtgtggtttttttccctctcctt 164



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>gb|AC139323.4| Mus musculus BAC clone RP24-383P22 from 13, complete sequence
          Length = 231965

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    aagtgattttttgttcttat 316
              ||||||||||||||||||||
Sbjct: 180147 aagtgattttttgttcttat 180166



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>gb|AC126450.4| Mus musculus BAC clone RP23-379J7 from 3, complete sequence
          Length = 159914

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   tatgctcccattgcaaggca 124
             ||||||||||||||||||||
Sbjct: 36649 tatgctcccattgcaaggca 36668


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,876,834
Number of Sequences: 3902068
Number of extensions: 5876834
Number of successful extensions: 123462
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123388
Number of HSP's gapped (non-prelim): 74
length of query: 643
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 620
effective length of database: 17,143,297,704
effective search space: 10628844576480
effective search space used: 10628844576480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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