| Clone Name | baal11b15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence Length = 779 Score = 226 bits (114), Expect = 1e-56 Identities = 116/117 (99%) Strand = Plus / Plus Query: 1 cttcttcaggtcggcgttccactcgtttncagacctcaaggcgctgcatgtgcagaacgt 60 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 166 cttcttcaggtcggcgttccactcgtttccagacctcaaggcgctgcatgtgcagaacgt 225 Query: 61 tggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 226 tggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 282
>ref|XM_475910.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1224 Score = 63.9 bits (32), Expect = 9e-08 Identities = 50/56 (89%) Strand = Plus / Plus Query: 62 ggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117 |||||||| |||||| ||||||| || ||||| |||||||||||||||||| |||| Sbjct: 892 ggcgacgtggtgcccatgtacccgccgctgggctacgtggacgtggccgtgaagct 947
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 63.9 bits (32), Expect = 9e-08 Identities = 50/56 (89%) Strand = Plus / Minus Query: 62 ggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117 |||||||| |||||| ||||||| || ||||| |||||||||||||||||| |||| Sbjct: 163399 ggcgacgtggtgcccatgtacccgccgctgggctacgtggacgtggccgtgaagct 163344
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 63.9 bits (32), Expect = 9e-08 Identities = 50/56 (89%) Strand = Plus / Minus Query: 62 ggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117 |||||||| |||||| ||||||| || ||||| |||||||||||||||||| |||| Sbjct: 14081 ggcgacgtggtgcccatgtacccgccgctgggctacgtggacgtggccgtgaagct 14026
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 63.9 bits (32), Expect = 9e-08 Identities = 50/56 (89%) Strand = Plus / Minus Query: 62 ggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117 |||||||| |||||| ||||||| || ||||| |||||||||||||||||| |||| Sbjct: 28379157 ggcgacgtggtgcccatgtacccgccgctgggctacgtggacgtggccgtgaagct 28379102
>dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full insert sequence Length = 1526 Score = 63.9 bits (32), Expect = 9e-08 Identities = 50/56 (89%) Strand = Plus / Plus Query: 62 ggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117 |||||||| |||||| ||||||| || ||||| |||||||||||||||||| |||| Sbjct: 976 ggcgacgtggtgcccatgtacccgccgctgggctacgtggacgtggccgtgaagct 1031
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ggcgctgcatgtgcagaacg 59 |||||||||||||||||||| Sbjct: 1715702 ggcgctgcatgtgcagaacg 1715683
>emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on chromosome 10 Contains a novel gene, complete sequence Length = 103124 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 acctctggggtacgtggacgtggc 108 |||||||||||||||||| ||||| Sbjct: 96117 acctctggggtacgtggaggtggc 96140
>ref|XM_545893.2| PREDICTED: Canis familiaris similar to a disintegrin and metalloprotease with thrombospondin motifs-7 preproprotein (LOC488775), mRNA Length = 4953 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 ctggggtacgtggacgtgg 107 ||||||||||||||||||| Sbjct: 2182 ctggggtacgtggacgtgg 2200
>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160440 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 gtggacgtggccgtgcagc 116 ||||||||||||||||||| Sbjct: 48936 gtggacgtggccgtgcagc 48918
>ref|NM_167335.1| Drosophila melanogaster Smrter CG4013-RC, transcript variant C (Smr), mRNA Length = 13475 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gtggacgtggccgtgcagc 116 ||||||||||||||||||| Sbjct: 9540 gtggacgtggccgtgcagc 9558
>ref|NM_167334.1| Drosophila melanogaster Smrter CG4013-RB, transcript variant B (Smr), mRNA Length = 12702 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gtggacgtggccgtgcagc 116 ||||||||||||||||||| Sbjct: 8767 gtggacgtggccgtgcagc 8785
>ref|NM_132843.1| Drosophila melanogaster CG17209-RA (CG17209), mRNA Length = 4137 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 aaggcgctgcatgtgcaga 56 ||||||||||||||||||| Sbjct: 491 aaggcgctgcatgtgcaga 509
>ref|NM_080536.2| Drosophila melanogaster Smrter CG4013-RA, transcript variant A (Smr), mRNA Length = 12622 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gtggacgtggccgtgcagc 116 ||||||||||||||||||| Sbjct: 8687 gtggacgtggccgtgcagc 8705
>gb|AC092401.1|AC092401 Drosophila melanogaster, chromosome X, region 13E-13F, BAC clone BACR25C18, complete sequence Length = 185200 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 aaggcgctgcatgtgcaga 56 ||||||||||||||||||| Sbjct: 75085 aaggcgctgcatgtgcaga 75103
>gb|AC013431.9|AC013431 Drosophila melanogaster, chromosome X, region 13E-13F, BAC clone BACR22H11, complete sequence Length = 191558 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 aaggcgctgcatgtgcaga 56 ||||||||||||||||||| Sbjct: 53815 aaggcgctgcatgtgcaga 53833
>ref|XM_315780.2| Anopheles gambiae str. PEST ENSANGP00000004408 (ENSANGG00000003471), partial mRNA Length = 1263 Score = 38.2 bits (19), Expect = 5.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 44 ctgcatgtgcagaacgttggcgacgtc 70 ||||||| |||||||||||| |||||| Sbjct: 615 ctgcatgggcagaacgttggagacgtc 589
>gb|AF175223.1|AF175223 Drosophila melanogaster SANT domain protein SMRTER (Smrter) mRNA, complete cds Length = 11296 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gtggacgtggccgtgcagc 116 ||||||||||||||||||| Sbjct: 8059 gtggacgtggccgtgcagc 8077
>gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 of 74 of the complete sequence Length = 303344 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 aaggcgctgcatgtgcaga 56 ||||||||||||||||||| Sbjct: 57805 aaggcgctgcatgtgcaga 57823
>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete sequence Length = 302665 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 gtggacgtggccgtgcagc 116 ||||||||||||||||||| Sbjct: 66057 gtggacgtggccgtgcagc 66039 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 505,882 Number of Sequences: 3902068 Number of extensions: 505882 Number of successful extensions: 38975 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38920 Number of HSP's gapped (non-prelim): 55 length of query: 117 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 96 effective length of database: 17,151,101,840 effective search space: 1646505776640 effective search space used: 1646505776640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)