ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal11b15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, par... 226 1e-56
2ref|XM_475910.1| Oryza sativa (japonica cultivar-group), predic... 64 9e-08
3gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 64 9e-08
4gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome... 64 9e-08
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 64 9e-08
6dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 9e-08
7gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 1.4
8emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on ch... 40 1.4
9ref|XM_545893.2| PREDICTED: Canis familiaris similar to a disint... 38 5.4
10gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell ... 38 5.4
11ref|NM_167335.1| Drosophila melanogaster Smrter CG4013-RC, trans... 38 5.4
12ref|NM_167334.1| Drosophila melanogaster Smrter CG4013-RB, trans... 38 5.4
13ref|NM_132843.1| Drosophila melanogaster CG17209-RA (CG17209), mRNA 38 5.4
14ref|NM_080536.2| Drosophila melanogaster Smrter CG4013-RA, trans... 38 5.4
15gb|AC092401.1|AC092401 Drosophila melanogaster, chromosome X, re... 38 5.4
16gb|AC013431.9|AC013431 Drosophila melanogaster, chromosome X, re... 38 5.4
17ref|XM_315780.2| Anopheles gambiae str. PEST ENSANGP00000004408 ... 38 5.4
18gb|AF175223.1|AF175223 Drosophila melanogaster SANT domain prote... 38 5.4
19gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 ... 38 5.4
20gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 ... 38 5.4

>gb|U43495.1|HVU43495 Hordeum vulgare jasmonate-induced mRNA, partial 3' sequence
          Length = 779

 Score =  226 bits (114), Expect = 1e-56
 Identities = 116/117 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcttcaggtcggcgttccactcgtttncagacctcaaggcgctgcatgtgcagaacgt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 166 cttcttcaggtcggcgttccactcgtttccagacctcaaggcgctgcatgtgcagaacgt 225

                                                                    
Query: 61  tggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 282



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>ref|XM_475910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1224

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 62  ggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117
           |||||||| |||||| ||||||| || ||||| |||||||||||||||||| ||||
Sbjct: 892 ggcgacgtggtgcccatgtacccgccgctgggctacgtggacgtggccgtgaagct 947



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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                      
Query: 62     ggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117
              |||||||| |||||| ||||||| || ||||| |||||||||||||||||| ||||
Sbjct: 163399 ggcgacgtggtgcccatgtacccgccgctgggctacgtggacgtggccgtgaagct 163344



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>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
             complete sequence
          Length = 119500

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 62    ggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117
             |||||||| |||||| ||||||| || ||||| |||||||||||||||||| ||||
Sbjct: 14081 ggcgacgtggtgcccatgtacccgccgctgggctacgtggacgtggccgtgaagct 14026



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                        
Query: 62       ggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117
                |||||||| |||||| ||||||| || ||||| |||||||||||||||||| ||||
Sbjct: 28379157 ggcgacgtggtgcccatgtacccgccgctgggctacgtggacgtggccgtgaagct 28379102



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>dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full
            insert sequence
          Length = 1526

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                    
Query: 62   ggcgacgtcgtgcccctgtacccacctctggggtacgtggacgtggccgtgcagct 117
            |||||||| |||||| ||||||| || ||||| |||||||||||||||||| ||||
Sbjct: 976  ggcgacgtggtgcccatgtacccgccgctgggctacgtggacgtggccgtgaagct 1031



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 40      ggcgctgcatgtgcagaacg 59
               ||||||||||||||||||||
Sbjct: 1715702 ggcgctgcatgtgcagaacg 1715683



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>emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 103124

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 85    acctctggggtacgtggacgtggc 108
             |||||||||||||||||| |||||
Sbjct: 96117 acctctggggtacgtggaggtggc 96140



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>ref|XM_545893.2| PREDICTED: Canis familiaris similar to a disintegrin and
            metalloprotease with thrombospondin motifs-7
            preproprotein (LOC488775), mRNA
          Length = 4953

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 89   ctggggtacgtggacgtgg 107
            |||||||||||||||||||
Sbjct: 2182 ctggggtacgtggacgtgg 2200



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>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 160440

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    gtggacgtggccgtgcagc 116
             |||||||||||||||||||
Sbjct: 48936 gtggacgtggccgtgcagc 48918



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>ref|NM_167335.1| Drosophila melanogaster Smrter CG4013-RC, transcript variant C (Smr),
            mRNA
          Length = 13475

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 98   gtggacgtggccgtgcagc 116
            |||||||||||||||||||
Sbjct: 9540 gtggacgtggccgtgcagc 9558



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>ref|NM_167334.1| Drosophila melanogaster Smrter CG4013-RB, transcript variant B (Smr),
            mRNA
          Length = 12702

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 98   gtggacgtggccgtgcagc 116
            |||||||||||||||||||
Sbjct: 8767 gtggacgtggccgtgcagc 8785



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>ref|NM_132843.1| Drosophila melanogaster CG17209-RA (CG17209), mRNA
          Length = 4137

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 38  aaggcgctgcatgtgcaga 56
           |||||||||||||||||||
Sbjct: 491 aaggcgctgcatgtgcaga 509



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>ref|NM_080536.2| Drosophila melanogaster Smrter CG4013-RA, transcript variant A (Smr),
            mRNA
          Length = 12622

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 98   gtggacgtggccgtgcagc 116
            |||||||||||||||||||
Sbjct: 8687 gtggacgtggccgtgcagc 8705



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>gb|AC092401.1|AC092401 Drosophila melanogaster, chromosome X, region 13E-13F, BAC clone
             BACR25C18, complete sequence
          Length = 185200

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    aaggcgctgcatgtgcaga 56
             |||||||||||||||||||
Sbjct: 75085 aaggcgctgcatgtgcaga 75103



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>gb|AC013431.9|AC013431 Drosophila melanogaster, chromosome X, region 13E-13F, BAC clone
             BACR22H11, complete sequence
          Length = 191558

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    aaggcgctgcatgtgcaga 56
             |||||||||||||||||||
Sbjct: 53815 aaggcgctgcatgtgcaga 53833



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>ref|XM_315780.2| Anopheles gambiae str. PEST ENSANGP00000004408
           (ENSANGG00000003471), partial mRNA
          Length = 1263

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 44  ctgcatgtgcagaacgttggcgacgtc 70
           ||||||| |||||||||||| ||||||
Sbjct: 615 ctgcatgggcagaacgttggagacgtc 589



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>gb|AF175223.1|AF175223 Drosophila melanogaster SANT domain protein SMRTER (Smrter) mRNA,
            complete cds
          Length = 11296

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 98   gtggacgtggccgtgcagc 116
            |||||||||||||||||||
Sbjct: 8059 gtggacgtggccgtgcagc 8077



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>gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 of 74 of the complete
             sequence
          Length = 303344

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    aaggcgctgcatgtgcaga 56
             |||||||||||||||||||
Sbjct: 57805 aaggcgctgcatgtgcaga 57823



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>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete
             sequence
          Length = 302665

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    gtggacgtggccgtgcagc 116
             |||||||||||||||||||
Sbjct: 66057 gtggacgtggccgtgcagc 66039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 505,882
Number of Sequences: 3902068
Number of extensions: 505882
Number of successful extensions: 38975
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38920
Number of HSP's gapped (non-prelim): 55
length of query: 117
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 96
effective length of database: 17,151,101,840
effective search space: 1646505776640
effective search space used: 1646505776640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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