ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal11a08 |
|---|---|
| Clone Library Name | barley_pub |
>SRPR_DROME (Q9U5L1) Signal recognition particle receptor alpha subunit homolog| (SR-alpha) (Docking protein alpha) (DP-alpha) (GTP-binding protein) Length = 614 Score = 83.2 bits (204), Expect = 6e-16 Identities = 57/155 (36%), Positives = 80/155 (51%), Gaps = 9/155 (5%) Frame = +2 Query: 206 TEPKKAVKQMRVWDDKPPKNEKLDFTDPADERGDEV------IEKVLTNQGXXXXXXXXX 367 ++P+KA K+ RVWD ++ D + + D+V E V T QG Sbjct: 210 SKPEKAGKKPRVWD-LGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVES 268 Query: 368 XXXXXXXXXXXXXXNAEAGQKKKG---WFSSMFKSIAGNNVLEKSDLQPALKALKDRLMT 538 E Q KKG S FK I G + +DLQPAL+ ++D L++ Sbjct: 269 EDEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLIS 328 Query: 539 KNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQ 643 KNVA EIA KLC+SVAASL+GK++G+F I+S V+ Sbjct: 329 KNVASEIAAKLCDSVAASLDGKQMGTFDSIASQVK 363
>SRPR_CANFA (P06625) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 638 Score = 66.6 bits (161), Expect = 6e-11 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 3/81 (3%) Frame = +2 Query: 410 NAEAGQKKKGWFSSMF---KSIAGNNVLEKSDLQPALKALKDRLMTKNVAEEIAEKLCES 580 NA KG MF K + G+ L + D++ L ++D L+ KNVA +IA +LCES Sbjct: 306 NASKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCES 365 Query: 581 VAASLEGKKLGSFTRISSTVQ 643 VA LEGK +G+F+ ++STV+ Sbjct: 366 VANKLEGKVMGTFSTVTSTVK 386
>SRPR_HUMAN (P08240) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 638 Score = 65.9 bits (159), Expect = 1e-10 Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 6/157 (3%) Frame = +2 Query: 191 KKVAKTEPK-KAVKQMRVWDDKPPKN-EKLDFTDPADERGDEVIEK----VLTNQGXXXX 352 K PK K K RVW+ N E LD++ P E ++ G Sbjct: 230 KSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGSGGQ 289 Query: 353 XXXXXXXXXXXXXXXXXXXNAEAGQKKKGWFSSMFKSIAGNNVLEKSDLQPALKALKDRL 532 A + G M K + G+ L + D++ L ++D L Sbjct: 290 LQDLDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHL 349 Query: 533 MTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQ 643 + KNVA +IA +LCESVA LEGK +G+F+ ++STV+ Sbjct: 350 IAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVK 386
>SRPR_MOUSE (Q9DBG7) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 636 Score = 65.1 bits (157), Expect = 2e-10 Identities = 30/69 (43%), Positives = 46/69 (66%) Frame = +2 Query: 437 GWFSSMFKSIAGNNVLEKSDLQPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGS 616 G M K + G+ L + D++ L ++D L+ KNVA +IA +LCESVA LEGK +G+ Sbjct: 316 GGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGT 375 Query: 617 FTRISSTVQ 643 F+ ++STV+ Sbjct: 376 FSTVTSTVK 384
>SRPR_YEAST (P32916) Signal recognition particle receptor alpha subunit homolog| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 621 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +2 Query: 428 KKKGWFSSMF----KSIAGNNVLEKSDLQPALKALKDRLMTKNVAEEIAEKLCESVAASL 595 K G+ S+ F K + GN + +SDL+ L+ L +L+TKNVA E A+ L + V+ L Sbjct: 284 KNSGYVSTAFGFLQKHVLGNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDL 343 Query: 596 EGKKLGSFTRISSTVQ 643 G K ++T + +T + Sbjct: 344 VGSKTANWTSVENTAR 359
>DOCK_SULAC (P27414) Probable signal recognition particle protein (Docking| protein) (P41) Length = 369 Score = 34.7 bits (78), Expect = 0.25 Identities = 18/77 (23%), Positives = 37/77 (48%) Frame = +2 Query: 410 NAEAGQKKKGWFSSMFKSIAGNNVLEKSDLQPALKALKDRLMTKNVAEEIAEKLCESVAA 589 + + GQ+ K F +++ DL ++ L+ +L+ +V+ E+ EK+ E + Sbjct: 66 SVQTGQENKQENKRSFFDFLKYKTIKEDDLNDVIEELRFQLLDSDVSYEVTEKILEDLKN 125 Query: 590 SLEGKKLGSFTRISSTV 640 +L GKK+ + V Sbjct: 126 NLIGKKVSRREEVEEIV 142
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 33.5 bits (75), Expect = 0.55 Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 9/107 (8%) Frame = -3 Query: 383 RYRCSDPRPYPSCCPPGW*APSLSPHPLSRQ-------LGP*SPASRSWAVCXXXXXXXX 225 R RC PRP+P AP+ +PH + L P +P SRS Sbjct: 1211 RARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGWDLPPPAPTSRS------------ 1258 Query: 224 XXXXXXXXXXXSHQSSCRRHRPSFLLSSYVRYLHRRPH--RWGPRSP 90 SSC R P+ L+ R+ R PH WGP P Sbjct: 1259 ----------LEDLSSCPRAAPTRRLTGPSRHARRCPHAAHWGPPLP 1295
>Y291_METJA (Q57739) Probable signal recognition particle protein MJ0291| Length = 409 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Frame = +2 Query: 416 EAGQKKKGWFSSMFKSIAGNNVLEKS------DLQPALKALKDRLMTKNVAEEIAEKLCE 577 E +KK +F + A VL+K D++ L+ L+ L+ +VA E+ EKL E Sbjct: 90 EKEEKKITFFDRFGLTRAIKKVLKKEVVILEEDIEDVLEELEIALLEADVALEVVEKLIE 149 Query: 578 SVAASLEGKKL 610 ++ L G+K+ Sbjct: 150 NIKNELVGRKI 160
>SYFA_BRUSU (Q8FXX5) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 369 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +2 Query: 431 KKGWFSSMFKSIAGNNVLEKSDLQPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKL 610 KKG S K++ G + E+ PA+ LK+R +T+ ++E E +VAA LE +K+ Sbjct: 34 KKGTVSEKLKTLGGMSPEERQMQGPAINGLKNR-VTEALSERRTELRKAAVAARLEREKV 92
>SYFA_BRUME (Q8YE73) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 369 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +2 Query: 431 KKGWFSSMFKSIAGNNVLEKSDLQPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKL 610 KKG S K++ G + E+ PA+ LK+R +T+ ++E E +VAA LE +K+ Sbjct: 34 KKGTVSEKLKTLGGMSPEERQMQGPAINGLKNR-VTEALSERRTELRKAAVAARLEREKV 92
>SYFA_BRUAB (Q57AE0) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 369 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +2 Query: 431 KKGWFSSMFKSIAGNNVLEKSDLQPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKL 610 KKG S K++ G + E+ PA+ LK+R +T+ ++E E +VAA LE +K+ Sbjct: 34 KKGTVSEKLKTLGGMSPEERQMQGPAINGLKNR-VTEALSERRTELRKAAVAARLEREKV 92
>SYFA_BRUA2 (Q2YQV5) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 369 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +2 Query: 431 KKGWFSSMFKSIAGNNVLEKSDLQPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKL 610 KKG S K++ G + E+ PA+ LK+R +T+ ++E E +VAA LE +K+ Sbjct: 34 KKGTVSEKLKTLGGMSPEERQMQGPAINGLKNR-VTEALSERRTELRKAAVAARLEREKV 92
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 32.0 bits (71), Expect = 1.6 Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 9/107 (8%) Frame = -3 Query: 383 RYRCSDPRPYPSCCPPGW*APSLSPHPLSRQLG-------P*SPASRSWAVCXXXXXXXX 225 R RC PRP+P AP+ +PH + P +P SRS Sbjct: 1211 RARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGWDFPPPAPTSRS------------ 1258 Query: 224 XXXXXXXXXXXSHQSSCRRHRPSFLLSSYVRYLHRRPH--RWGPRSP 90 SSC R P+ L+ R+ R PH WGP P Sbjct: 1259 ----------LEDLSSCPRAAPTRRLTGPSRHARRCPHAAHWGPPLP 1295
>CLF1_ASPFU (Q4WT84) Pre-mRNA-splicing factor clf1| Length = 676 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/48 (29%), Positives = 29/48 (60%) Frame = +2 Query: 185 DVKKVAKTEPKKAVKQMRVWDDKPPKNEKLDFTDPADERGDEVIEKVL 328 D+KK+ + P++ K+ ++ DD+ E +D+ PAD++ + K+L Sbjct: 616 DIKKIEEQMPRRVKKRRKLDDDR--YEEYMDYVFPADDQAAASLTKIL 661
>CT075_MOUSE (P59383) Protein C20orf75 homolog precursor| Length = 733 Score = 30.8 bits (68), Expect = 3.5 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = -2 Query: 585 ATDSQSFSAISSATFFVISLSLRALSAGCRSDFSSTLLPA 466 A D+ A+ S F LSL LS CRSD S+TLLP+ Sbjct: 334 AADTMCEPALGSTGPFSGPLSLSHLSNVCRSDQSTTLLPS 373
>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel| [Contains: Glutamic acid-rich protein (GARP); Cyclic-nucleotide-gated cation channel 4 (CNG channel 4) (CNG-4) (Cyclic nucleotide-gated cation channel modulatory subunit)] Length = 1394 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +1 Query: 142 EDRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQE 264 E +KE R +E+ EEGG+ +EGR+ +E GR +E Sbjct: 397 EGEKKEEEGREKEE--EEGGEKEDEEGREKEEEEGRGKEEE 435 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +1 Query: 142 EDRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQERE 270 E +EGR + +E EGG+ +EGR +E GR+ ++ E Sbjct: 423 EKEEEEGRGKEEE----EGGEKEEEEGRGKEEVEGREEEEDEE 461
>ACCO1_CUCME (Q04644) 1-aminocyclopropane-1-carboxylate oxidase 1 (EC 1.14.17.4)| (ACC oxidase 1) (Ethylene-forming enzyme) (EFE) (PMEL1) Length = 318 Score = 30.0 bits (66), Expect = 6.0 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Frame = +2 Query: 413 AEAGQKKKGWFSSMF-KSIAGNNVLEKSDLQPALKALKDRLMTK--NVAEEIAEKLCESV 583 A+A W S+ F + + +N+ + SDL K + K N+AEE+ + LCE++ Sbjct: 77 AQAEVNDMDWESTFFLRHLPESNISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENL 136
>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 690 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +1 Query: 145 DRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQERE 270 +RR GR R +D ++G QDR +G Q ++G +RE Sbjct: 155 ERRSRGRRRAGDDDAQQG-QDRRSDGAQGEDGADADRRGDRE 195
>CLF1_PARBR (Q5K654) Pre-mRNA-splicing factor CLF1| Length = 677 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = +2 Query: 185 DVKKVAKTEPKKAVKQMRVWDDKPPKNEKLDFTDPADERGDEVIEKVL 328 D+ K+ + P K K+ ++ DD+ E LD+ PAD+ + ++L Sbjct: 614 DIAKIERQMPSKVKKRRKLDDDR--YEEYLDYMFPADDESSAKLSQIL 659
>NFL_XENLA (P35616) Neurofilament triplet L protein (Neurofilament light| polypeptide) (NF-L) Length = 543 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = +1 Query: 142 EDRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQ 261 E+ +EG ++E+ EEGGQ++ +EG +EG G A+ Sbjct: 481 EEEGEEGEEAKEEEAEEEGGQEKEEEG---EEGEGEAEAE 517
>ERME_SACER (P07287) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)| (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycin resistance protein) (NMT) Length = 370 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/49 (36%), Positives = 21/49 (42%) Frame = +1 Query: 145 DRRKEGRWRRQED*CEEGGQDRAQEGRQADEGLGRQTAQEREAGLHGPS 291 DRR GR R G DR GR D+G + Q + G GPS Sbjct: 306 DRRTGGRDHRDRQ--ASGHGDRRSSGRNRDDGRTGEREQGDQGGRRGPS 352 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,968,415 Number of Sequences: 219361 Number of extensions: 1069770 Number of successful extensions: 3762 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3586 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3754 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
