Clone Name	baak44m13
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ARR8_ARATH (O80365) Two-component response regulator ARR8 (Respo...	208	1e-53
2	ARR9_ARATH (O80366) Two-component response regulator ARR9 (Respo...	204	2e-52
3	ARR6_ARATH (Q9ZWS6) Two-component response regulator ARR6	169	6e-42
4	ARR5_ARATH (Q9SB04) Two-component response regulator ARR5 (Respo...	168	1e-41
5	ARR4_ARATH (O82798) Two-component response regulator ARR4 (Respo...	168	1e-41
6	ARR7_ARATH (Q9ZWS7) Two-component response regulator ARR7	166	4e-41
7	ARR3_ARATH (Q9ZWS9) Two-component response regulator ARR3	163	5e-40
8	ARR15_ARATH (Q7G8V2) Two-component response regulator ARR15	162	8e-40
9	ARR17_ARATH (Q9FPR6) Two-component response regulator ARR17	162	1e-39
10	ARR16_ARATH (Q9SHC2) Two-component response regulator ARR16	160	2e-39
11	PRR37_ORYSA (Q689G8) Two-component response regulator-like PRR37...	75	2e-13
12	PRR73_ORYSA (Q689G4) Two-component response regulator-like PRR73...	73	6e-13
13	APRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7...	71	3e-12
14	ARR21_ARATH (Q9LYP5) Putative two-component response regulator A...	70	7e-12
15	ARR12_ARATH (P62598) Two-component response regulator ARR12	69	9e-12
16	ARR11_ARATH (Q9FXD6) Two-component response regulator ARR11 (Rec...	68	2e-11
17	APRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3...	68	3e-11
18	APRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5...	68	3e-11
19	PRR95_ORYSA (Q689G6) Two-component response regulator-like PRR95...	67	6e-11
20	APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9...	65	1e-10
21	CHEY_HELPY (P71403) Chemotaxis protein cheY homolog	64	5e-10
22	REGA_DICDI (Q23917) 3',5'-cyclic-nucleotide phosphodiesterase re...	63	6e-10
23	ARR10_ARATH (O49397) Two-component response regulator ARR10 (Rec...	63	6e-10
24	ARR1_ARATH (Q940D0) Two-component response regulator ARR1	62	1e-09
25	CHEY_HELPJ (Q9ZM64) Chemotaxis protein cheY homolog	62	1e-09
26	ARR19_ARATH (Q9M9B9) Putative two-component response regulator A...	61	3e-09
27	RPFC_XANCP (P0C0F6) Sensory/regulatory protein rpfC (EC 2.7.13.3)	60	4e-09
28	RPFC_XANC8 (P0C0F7) Sensory/regulatory protein rpfC (EC 2.7.13.3)	60	4e-09
29	ARR14_ARATH (Q8L9Y3) Two-component response regulator ARR14	59	9e-09
30	CHEY_PSEAE (Q51455) Chemotaxis protein cheY	59	1e-08
31	PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1 (...	58	2e-08
32	ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Recei...	58	2e-08
33	ARR13_ARATH (Q9ZVD3) Putative two-component response regulator A...	57	4e-08
34	CHEY_CAMJE (P71129) Chemotaxis protein cheY homolog	55	2e-07
35	PLED_CAUCR (Q9A5I5) Response regulator pleD (Stalked cell differ...	55	2e-07
36	CHEV_BACSU (P37599) Chemotaxis protein cheV	54	4e-07
37	RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular ...	54	4e-07
38	APRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1...	54	4e-07
39	RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular ...	54	5e-07
40	ARR18_ARATH (Q9FGT7) Two-component response regulator ARR18	54	5e-07
41	ARR20_ARATH (Q9LZJ8) Putative two-component response regulator A...	54	5e-07
42	YCF27_CYACA (Q9TLQ4) Probable transcriptional regulator ycf27 (O...	52	1e-06
43	RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Ca...	52	1e-06
44	RCP1_SYNY3 (Q55169) Response regulator rcp1	50	6e-06
45	RPFG_XANC8 (Q4UU85) Response regulator rpfG	50	6e-06
46	YCF27_CYAPA (P48259) Probable transcriptional regulator ycf27 (O...	50	7e-06
47	PILG_PSEAE (P46384) Protein pilG	49	1e-05
48	YKOG_BACSU (O34903) Hypothetical sensory transduction protein ykoG	49	1e-05
49	PHOB_SHIFL (P45607) Phosphate regulon transcriptional regulatory...	49	2e-05
50	PHOB_SHIDY (P45606) Phosphate regulon transcriptional regulatory...	49	2e-05
51	PHOB_ECOLI (P0AFJ5) Phosphate regulon transcriptional regulatory...	49	2e-05
52	PHOB_ECO57 (P0AFJ6) Phosphate regulon transcriptional regulatory...	49	2e-05
53	SPAR_BACSU (P33112) Subtilin biosynthesis regulatory protein spaR	48	2e-05
54	PHOB_HAEIN (P45189) Phosphate regulon transcriptional regulatory...	47	4e-05
55	CHEY_YERPE (Q8D0P1) Chemotaxis protein cheY	47	4e-05
56	YCF27_GUITH (O78428) Probable transcriptional regulator ycf27 (O...	47	4e-05
57	PHOB_KLEPN (P45605) Phosphate regulon transcriptional regulatory...	47	5e-05
58	MTRA_MYCTU (P0A5Z4) DNA-binding response regulator mtrA	47	5e-05
59	MTRA_MYCPA (Q93CB8) DNA-binding response regulator mtrA	47	5e-05
60	MTRA_MYCLE (Q9CCJ2) DNA-binding response regulator mtrA	47	5e-05
61	MTRA_MYCBO (P0A5Z5) DNA-binding response regulator mtrA	47	5e-05
62	CHEY_YEREN (Q93P00) Chemotaxis protein cheY	47	5e-05
63	VIRG_AGRTU (Q44444) Regulatory protein virG	47	5e-05
64	FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7....	47	6e-05
65	NTRC_RHIME (P10577) Nitrogen assimilation regulatory protein	46	8e-05
66	NTRC_ECOLI (P0AFB8) Nitrogen regulation protein NR(I)	46	8e-05
67	NTRC_ECO57 (P0AFB9) Nitrogen regulation protein NR(I)	46	8e-05
68	CHEY_SALTY (P0A2D5) Chemotaxis protein cheY	46	8e-05
69	CHEY_SALTI (P0A2D6) Chemotaxis protein cheY	46	8e-05
70	VIRG_AGRT9 (P62722) Regulatory protein virG	46	1e-04
71	APRR4_ARATH (Q9FJ16) Putative two-component response regulator-l...	46	1e-04
72	NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein	46	1e-04
73	DCTD_RHIME (P13632) C4-dicarboxylate transport transcriptional r...	45	1e-04
74	YCF27_GALSU (P28257) Probable transcriptional regulator ycf27 (O...	45	1e-04
75	CZCR_RALME (Q44006) Transcriptional activator protein czcR	45	1e-04
76	YDFI_BACSU (P96686) Sensory transduction protein ydfI	45	2e-04
77	NTRC_SALTY (P41789) Nitrogen regulation protein NR(I)	45	2e-04
78	NTRC_BRASR (P10576) Nitrogen assimilation regulatory protein	45	2e-04
79	CHEY_ENTCL (Q9FAD7) Chemotaxis protein cheY	45	2e-04
80	RESD_BACSU (P35163) Transcriptional regulatory protein resD	45	2e-04
81	PHOB_PSEAE (P23620) Phosphate regulon transcriptional regulatory...	45	2e-04
82	CHEB_CLOAB (Q97GZ3) Chemotaxis response regulator protein-glutam...	44	3e-04
83	LUXO1_VIBCH (Q9KT84) Regulatory protein luxO	44	3e-04
84	YCF27_PORAE (P28835) Probable transcriptional regulator ycf27 (O...	44	3e-04
85	AFSQ1_STRCO (Q04942) Transcriptional regulatory protein afsQ1	44	3e-04
86	EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3)	44	3e-04
87	CHEY_SHIFL (P0AE69) Chemotaxis protein cheY	44	3e-04
88	CHEY_ECOLI (P0AE67) Chemotaxis protein cheY	44	3e-04
89	CHEY_ECO57 (P0AE68) Chemotaxis protein cheY	44	3e-04
90	MAK1_SCHPO (Q9P7Q7) Peroxide stress-activated histidine kinase m...	44	4e-04
91	CHEY_ECOL6 (Q8FGP6) Chemotaxis protein cheY	44	4e-04
92	TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC...	44	4e-04
93	CTRA_CAUCR (Q45994) Cell cycle transcriptional regulator ctrA (R...	44	5e-04
94	NTRC_AZOBR (P45671) Nitrogen assimilation regulatory protein	43	7e-04
95	ETR1_PRUPE (Q9M7M1) Ethylene receptor (EC 2.7.13.3)	43	7e-04
96	EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3)	43	0.001
97	HNR_SHIFL (P0AEV3) Protein hnr	43	0.001
98	HNR_ECOLI (P0AEV1) Protein hnr	43	0.001
99	HNR_ECO57 (P0AEV2) Protein hnr	43	0.001
100	PHOB_RHIME (Q52990) Phosphate regulon transcriptional regulatory...	43	0.001
101	OMPR_SHIFL (P0AA21) Transcriptional regulatory protein ompR	43	0.001
102	OMPR_SALTY (P0AA19) Transcriptional regulatory protein ompR	43	0.001
103	OMPR_SALTI (P0AA20) Transcriptional regulatory protein ompR	43	0.001
104	OMPR_ECOLI (P0AA16) Transcriptional regulatory protein ompR	43	0.001
105	OMPR_ECOL6 (P0AA17) Transcriptional regulatory protein ompR	43	0.001
106	OMPR_ECO57 (P0AA18) Transcriptional regulatory protein ompR	43	0.001
107	ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR	43	0.001
108	ETR1_CUCSA (Q9SSY6) Ethylene receptor (EC 2.7.13.3) (CS-ETR1)	42	0.001
109	ETR1_CUCMR (O82436) Ethylene receptor (EC 2.7.13.3) (MEETR1) (Cm...	42	0.001
110	YCLJ_BACSU (P94413) Hypothetical sensory transduction protein yclJ	42	0.001
111	CPXR_HAEIN (P44895) Transcriptional regulatory protein cpxR homolog	42	0.001
112	PRRA_MYCTU (P0A5Z6) Transcriptional regulatory protein prrA	42	0.001
113	PRRA_MYCBO (P0A5Z7) Transcriptional regulatory protein prrA	42	0.001
114	CYAB_STIAU (P40138) Adenylate cyclase 2 (EC 4.6.1.1) (ATP pyroph...	42	0.001
115	GACS_PSESY (P48027) Sensor protein gacS (EC 2.7.13.3)	42	0.001
116	MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase m...	42	0.002
117	PRRA_MYCLE (Q50136) Transcriptional regulatory protein prrA	42	0.002
118	COPR_PSESM (Q02540) Transcriptional activator protein copR	42	0.002
119	ZRAR_KLEOX (Q9APD9) Transcriptional regulatory protein zraR	42	0.002
120	CHEB_BACSU (Q05522) Chemotaxis response regulator protein-glutam...	42	0.002
121	SRRA_STAAW (Q7A0U4) Transcriptional regulatory protein srrA (Sta...	42	0.002
122	SRRA_STAAU (Q9L524) Transcriptional regulatory protein srrA (Sta...	42	0.002
123	SRRA_STAAS (Q6G972) Transcriptional regulatory protein srrA (Sta...	42	0.002
124	SRRA_STAAR (Q6GGK6) Transcriptional regulatory protein srrA (Sta...	42	0.002
125	SRRA_STAAN (Q7A5H6) Transcriptional regulatory protein srrA (Sta...	42	0.002
126	SRRA_STAAM (Q7A2R6) Transcriptional regulatory protein srrA (Sta...	42	0.002
127	SRRA_STAAC (Q5HFT0) Transcriptional regulatory protein srrA (Sta...	42	0.002
128	YCF29_CYAPA (P48359) Probable transcriptional regulator ycf29	42	0.002
129	ETR2_PELHO (Q9XH57) Ethylene receptor 2 (EC 2.7.13.3) (PhETR2)	42	0.002
130	ETR1_ARATH (P49333) Ethylene receptor (EC 2.7.13.3)	42	0.002
131	CHEY_BACSU (P24072) Chemotaxis protein cheY homolog	42	0.002
132	ARCA_HAEIN (P44918) Aerobic respiration control protein arcA hom...	42	0.002
133	YCF29_PORPU (P51343) Probable transcriptional regulator ycf29	42	0.002
134	Y2151_LEPIN (P24086) Hypothetical protein LA_2151 (ORF 2)	41	0.003
135	Y1769_LEPIC (Q72RH6) Hypothetical protein LIC_11769	41	0.003
136	YPH5_THIVI (P45365) Hypothetical 76.5 kDa protein in phbC 3'regi...	41	0.003
137	FIXJ_BRAJA (P23221) Transcriptional regulatory protein fixJ	41	0.003
138	BARA_SHIFL (P59342) Signal transduction histidine-protein kinase...	41	0.003
139	YEDW_ECOLI (P76340) Probable transcriptional regulatory protein ...	41	0.003
140	ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR	41	0.003
141	YRKP_BACSU (P54443) Hypothetical sensory transduction protein yrkP	41	0.003
142	HOXA_RALEU (P29267) Hydrogenase transcriptional regulatory prote...	41	0.003
143	REGX3_MYCTU (Q11156) Sensory transduction protein regX3	40	0.004
144	REGX3_MYCBO (O07130) Sensory transduction protein regX3	40	0.004
145	SKN7_YEAST (P38889) Transcription factor SKN7 (Peroxide sensitiv...	40	0.004
146	REGX3_MYCSM (Q9F868) Sensory transduction protein regX3	40	0.006
147	YFHA_ECOLI (P0AFU4) Hypothetical protein yfhA (ORF-2)	40	0.006
148	YFHA_ECO57 (P0AFU5) Hypothetical protein yfhA	40	0.006
149	LUXO_VIBPA (Q87MX7) Regulatory protein luxO	40	0.006
150	LUXO_VIBHA (P54299) Luminescence regulatory protein luxO	40	0.006
151	ARCA_SHIFL (P0A9Q4) Aerobic respiration control protein arcA	40	0.006
152	ARCA_ECOLI (P0A9Q1) Aerobic respiration control protein arcA (Dy...	40	0.006
153	ARCA_ECOL6 (P0A9Q2) Aerobic respiration control protein arcA	40	0.006
154	ARCA_ECO57 (P0A9Q3) Aerobic respiration control protein arcA	40	0.006
155	FIMZ_SALTY (P26319) Fimbriae Z protein	40	0.006
156	BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase...	40	0.008
157	BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase...	40	0.008
158	BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase...	40	0.008
159	LUXO_VIBVY (Q7MM78) Regulatory protein luxO	40	0.008
160	LUXO_VIBVU (Q8CWJ5) Regulatory protein luxO	40	0.008
161	ETR1_BRAOL (O49230) Ethylene receptor (EC 2.7.13.3)	40	0.008
162	SILR_SALTY (Q9ZHD3) Probable transcriptional regulatory protein ...	40	0.008
163	NTRC_PROVU (P28787) Nitrogen regulation protein NR(I)	39	0.010
164	SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1...	39	0.010
165	RCAC_FREDI (Q01473) Protein rcaC	39	0.013
166	LUXQ_VIBVY (Q7MD16) Autoinducer 2 sensor kinase/phosphatase luxQ...	39	0.013
167	LUXQ_VIBVU (Q8D5Z6) Autoinducer 2 sensor kinase/phosphatase luxQ...	39	0.013
168	ETR1_MALDO (O81122) Ethylene receptor (EC 2.7.13.3)	39	0.013
169	CITT_BACHD (Q9RC52) Transcriptional regulatory protein citT	39	0.013
170	CHEB_DESPS (Q6AJV3) Chemotaxis response regulator protein-glutam...	39	0.017
171	VIRG_AGRT5 (P07545) Regulatory protein virG	39	0.017
172	VIRG_AGRRH (P13359) Regulatory protein virG	39	0.017
173	FIMZ_ECOLI (P0AEL8) Fimbriae Z protein	38	0.022
174	FIMZ_ECO57 (P0AEL9) Fimbriae Z protein	38	0.022
175	LYTT_OCEIH (Q8EQQ3) Sensory transduction protein lytT	38	0.022
176	CHEB_NITEU (Q820K0) Chemotaxis response regulator protein-glutam...	38	0.029
177	BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC ...	38	0.029
178	BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC ...	38	0.029
179	BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC ...	38	0.029
180	APRR8_ARATH (O23100) Putative two-component response regulator-l...	38	0.029
181	ARR22_ARATH (Q9M8Y4) Two-component response regulator ARR22	37	0.038
182	CHEY_LISMO (P0A4H5) Chemotaxis protein cheY	37	0.038
183	CHEY_LISIN (P0A4H6) Chemotaxis protein cheY	37	0.038
184	PETR_RHOCA (P31079) Protein petR	37	0.049
185	LUXQ_VIBPA (Q87GU5) Autoinducer 2 sensor kinase/phosphatase luxQ...	37	0.049
186	PILH_PSEAE (P43501) Protein pilH	37	0.049
187	LUXN_VIBHA (P54301) Autoinducer 1 sensor kinase/phosphatase luxN...	37	0.065
188	ETR1_PELHO (Q9XH58) Ethylene receptor 1 (EC 2.7.13.3) (PhETR1)	37	0.065
189	FIXJ_AZOCA (P26487) Transcriptional regulatory protein fixJ	37	0.065
190	MCS4_SCHPO (P87323) Response regulator mcs4 (Mitotic catastrophe...	36	0.084
191	CUSR_ECOLI (P0ACZ8) Transcriptional regulatory protein cusR	36	0.084
192	CUSR_ECOL6 (P0ACZ9) Transcriptional regulatory protein cusR	36	0.084
193	CUSR_ECO57 (P0AD00) Transcriptional regulatory protein cusR	36	0.084
194	ETR2_LYCES (O49187) Ethylene receptor 2 (EC 2.7.13.3) (LeETR2)	36	0.084
195	ZRAR_SALTY (P25852) Transcriptional regulatory protein zraR	36	0.084
196	ZRAR_SALTI (Q8Z333) Transcriptional regulatory protein zraR	36	0.084
197	QSEB_ECOLI (P52076) Transcriptional regulatory protein qseB	36	0.11
198	REGX3_MYCLE (P54884) Sensory transduction protein regX3	36	0.11
199	VANR_ENTFC (Q06239) Regulatory protein vanR	35	0.14
200	QSEB_ECO57 (Q8XBS3) Transcriptional regulatory protein qseB	35	0.14
201	ETR1_TOBAC (O48929) Ethylene receptor (EC 2.7.13.3) (NT-ETR1)	35	0.14
202	QSEB_SALTY (P66795) Transcriptional regulatory protein qseB	35	0.19
203	QSEB_SALTI (P66796) Transcriptional regulatory protein qseB	35	0.19
204	PGTA_SALTY (P06184) Phosphoglycerate transport system transcript...	35	0.19
205	CHEB_BDEBA (P62635) Chemotaxis response regulator protein-glutam...	34	0.42
206	RSSB_SERMA (Q8GP20) Swarming motility regulation protein rssB	34	0.42
207	PCOR_ECOLI (Q47456) Transcriptional regulatory protein pcoR	34	0.42
208	ANP_NOTCO (P24856) Ice-structuring glycoprotein precursor (ISGP)...	34	0.42
209	MASZ_COREF (Q8FNB3) Malate synthase G (EC 2.3.3.9)	33	0.71
210	ARCB_SHIFL (P0AEC4) Aerobic respiration control sensor protein a...	33	0.93
211	ARCB_ECOLI (P0AEC3) Aerobic respiration control sensor protein a...	33	0.93
212	ARCB_ECO57 (P58363) Aerobic respiration control sensor protein a...	33	0.93
213	IRLR_BURPS (O31395) Transcriptional activator protein irlR	33	0.93
214	SSK1_YEAST (Q07084) Osomolarity two-component system protein SSK1	32	1.2
215	ISP3_SCHPO (P40899) Sexual differentiation process protein isp3 ...	32	1.2
216	AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)	32	1.2
217	DCTD_RHILE (P10046) C4-dicarboxylate transport transcriptional r...	32	1.6
218	TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Ta...	32	1.6
219	BASR_ECOLI (P30843) Transcriptional regulatory protein basR/pmrA	32	1.6
220	SP0A_BACME (P52932) Stage 0 sporulation protein A (Fragment)	32	1.6
221	BASR_SALTY (P36556) Transcriptional regulatory protein basR/pmrA	31	2.7
222	FIXJ_RHIME (P10958) Transcriptional regulatory protein fixJ	31	2.7
223	UVRY_ECOL6 (P66797) Response regulator uvrY	31	3.5
224	UVRY_ECO57 (P66798) Response regulator uvrY	31	3.5
225	CYTX_ONCVO (P22085) Onchocystatin precursor (Cysteine proteinase...	31	3.5
226	CPN_DROME (Q02910) Calphotin	30	4.6
227	RBL2_RAT (O55081) Retinoblastoma-like protein 2 (130 kDa retinob...	30	4.6
228	RBL2_MOUSE (Q64700) Retinoblastoma-like protein 2 (130 kDa retin...	30	4.6
229	ROL6_CAEEL (P20784) Cuticle collagen rol-6 (Protein roller-6)	30	4.6
230	PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor	30	4.6
231	FABH_PORPU (P51196) 3-oxoacyl-[acyl-carrier-protein] synthase 3 ...	30	4.6
232	ANPY_PSEAM (P23699) Ice-structuring protein precursor (ISP) (Ant...	30	6.0
233	MANB_CALSA (P22533) Beta-mannanase/endoglucanase A precursor [In...	30	6.0
234	CREB3_MOUSE (Q61817) Cyclic AMP-responsive element-binding prote...	30	6.0
235	Y4XI_RHISN (P55701) Probable transcriptional regulatory protein ...	30	7.9
236	MASZ_CORGL (P42450) Malate synthase G (EC 2.3.3.9)	30	7.9
237	PATA_ANASP (P39048) Protein patA (PAT-1)	30	7.9
238	HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein...	30	7.9
239	GLNL_BACSU (P40759) Sensory transduction protein glnL	30	7.9

---

>ARR8_ARATH (O80365) Two-component response regulator ARR8 (Response reactor 3)|
          Length = 225

 Score =  208 bits (529), Expect = 1e-53
 Identities = 101/147 (68%), Positives = 127/147 (86%), Gaps = 1/147 (0%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHAD-QLDV 178
           FHVLAVDDS+ DRK+IERLL+ SS QVTTVDSG+KAL+FLGL  +D   +++    Q+  
Sbjct: 9   FHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQIHQ 68

Query: 179 EVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFF 358
           EV +NLIITDYCMPGMTGYDLLKK+KES++FR IPVVIMSSEN+P+RI+RCLEEGA EFF
Sbjct: 69  EVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFF 128

Query: 359 LKPVRLSDMSKLKPHIMKSRCKEHSHE 439
           LKPV+L+D++KLKPH+MK++ K+ S +
Sbjct: 129 LKPVKLADLTKLKPHMMKTKLKKESEK 155

---

>ARR9_ARATH (O80366) Two-component response regulator ARR9 (Response reactor 4)|
          Length = 234

 Score =  204 bits (518), Expect = 2e-52
 Identities = 105/150 (70%), Positives = 122/150 (81%), Gaps = 3/150 (2%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           FHVLAVDDS+ DRKLIERLL+ SS QVTTVDSG+KAL+FLGL     S       +  V 
Sbjct: 9   FHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAFSKAPVN 68

Query: 182 ---VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANE 352
              V VNLIITDYCMPGMTGYDLLKK+KESS+FRDIPVVIMSSEN+P+RI+RCLEEGA E
Sbjct: 69  HQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEE 128

Query: 353 FFLKPVRLSDMSKLKPHIMKSRCKEHSHED 442
           FFLKPVRL+D++KLKPH+MK++ K    E+
Sbjct: 129 FFLKPVRLADLNKLKPHMMKTKLKNQKLEE 158

---

>ARR6_ARATH (Q9ZWS6) Two-component response regulator ARR6|
          Length = 186

 Score =  169 bits (428), Expect = 6e-42
 Identities = 87/136 (63%), Positives = 108/136 (79%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVLAVDDS +DRK IERLL+ SS +VT VDS T+ALQ+LGL  E+ S+          ++
Sbjct: 26  HVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFE-------DL 78

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
            VNLI+TDY MPGMTGY+LLKKIKESS+FR++PVVIMSSENI  RI+RCLEEGA +F LK
Sbjct: 79  KVNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLK 138

Query: 365 PVRLSDMSKLKPHIMK 412
           PV+LSD+ +L+  +MK
Sbjct: 139 PVKLSDVKRLRDSLMK 154

---

>ARR5_ARATH (Q9SB04) Two-component response regulator ARR5 (Response reactor 2)|
          Length = 184

 Score =  168 bits (426), Expect = 1e-41
 Identities = 89/137 (64%), Positives = 111/137 (81%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVLAVDDS++DRK IERLL+ SS +VT VDS T+ALQ+LGL  E+ S  SV  + L    
Sbjct: 26  HVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNS--SVGFEDL---- 79

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
            +NLI+TDY MPGMTGY+LLKKIKESS+FR+IPVVIMSSENI  RI+RCLEEGA +F LK
Sbjct: 80  KINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLK 139

Query: 365 PVRLSDMSKLKPHIMKS 415
           PV+L+D+ +L+  +MK+
Sbjct: 140 PVKLADVKRLRDSLMKA 156

---

>ARR4_ARATH (O82798) Two-component response regulator ARR4 (Response regulator|
           1)
          Length = 259

 Score =  168 bits (425), Expect = 1e-41
 Identities = 87/136 (63%), Positives = 111/136 (81%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVLAVDDS++DR +IERLL+ +S +VT VDSG +AL+FLGL  E AS      D+L V+ 
Sbjct: 35  HVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKAS---AEFDRLKVD- 90

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
              LIITDYCMPGMTGY+LLKKIKESS+FR++PVVIMSSEN+ +RI+RCLEEGA +F LK
Sbjct: 91  ---LIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLK 147

Query: 365 PVRLSDMSKLKPHIMK 412
           PV+L+D+ +L+ H+ K
Sbjct: 148 PVKLADVKRLRSHLTK 163

---

>ARR7_ARATH (Q9ZWS7) Two-component response regulator ARR7|
          Length = 206

 Score =  166 bits (421), Expect = 4e-41
 Identities = 87/150 (58%), Positives = 115/150 (76%), Gaps = 3/150 (2%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVLAVDDS++DRK+IERLL+ SS +VTTV+SGT+ALQ+LGL     + +         ++
Sbjct: 25  HVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLK-------DL 77

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
            VNLI+TDY MPG++GYDLLKKIKESS+FR++PVVIMSSENI  RI  CL+EGA EF LK
Sbjct: 78  KVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLK 137

Query: 365 PVRLSDMSKLKPHIMKS---RCKEHSHEDQ 445
           PV+L+D+ ++K  IM++    CK  SH ++
Sbjct: 138 PVKLADVKRIKQLIMRNEAEECKILSHSNK 167

---

>ARR3_ARATH (Q9ZWS9) Two-component response regulator ARR3|
          Length = 231

 Score =  163 bits (412), Expect = 5e-40
 Identities = 83/136 (61%), Positives = 112/136 (82%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVLAVDDS++DR +IERLL+ +S +VT VDSG +AL+FLGL  + A+   V  D+L V+ 
Sbjct: 34  HVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAA---VEFDRLKVD- 89

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
              LIITDYCMPGMTGY+LLKKIKES+SF+++PVVIMSSEN+ +RI+RCLEEGA +F LK
Sbjct: 90  ---LIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLK 146

Query: 365 PVRLSDMSKLKPHIMK 412
           PV+L+D+ +L+ ++ +
Sbjct: 147 PVKLADVKRLRSYLTR 162

---

>ARR15_ARATH (Q7G8V2) Two-component response regulator ARR15|
          Length = 206

 Score =  162 bits (410), Expect = 8e-40
 Identities = 84/136 (61%), Positives = 107/136 (78%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVLAVDDS +DRK+IERLLK S+ +VTTV+SGT+ALQ+LGL  ++ S           ++
Sbjct: 19  HVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLK-------DL 71

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
            VNLI+TDY MPG+TGY+LLKKIKESS+ R+IPVVIMSSENI  RI +C+ EGA EF LK
Sbjct: 72  KVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLK 131

Query: 365 PVRLSDMSKLKPHIMK 412
           PV+L+D+ +LK  IM+
Sbjct: 132 PVKLADVKRLKELIMR 147

---

>ARR17_ARATH (Q9FPR6) Two-component response regulator ARR17|
          Length = 153

 Score =  162 bits (409), Expect = 1e-39
 Identities = 79/138 (57%), Positives = 107/138 (77%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVLAVDD+++DRKL+ER+LK SS +VTT ++G +AL++LGL     +      D L   +
Sbjct: 21  HVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQT------DSLTNVM 74

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
            VNLIITDYCMPGMTG++LLKK+KESS+ +++PVVI+SSENIP+RIN+CL  GA  F  K
Sbjct: 75  KVNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQK 134

Query: 365 PVRLSDMSKLKPHIMKSR 418
           P++LSD+ KLK H++  R
Sbjct: 135 PLKLSDVEKLKCHLLNCR 152

---

>ARR16_ARATH (Q9SHC2) Two-component response regulator ARR16|
          Length = 164

 Score =  160 bits (406), Expect = 2e-39
 Identities = 81/139 (58%), Positives = 107/139 (76%), Gaps = 1/139 (0%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVLAVDD+++DRKL+ERLLK S  +VTT ++  +AL++LGL  ++      H D L   V
Sbjct: 30  HVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGLGDQNQ-----HIDALTCNV 84

Query: 185 -NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
             V+LIITDYCMPGMTG++LLKK+KESS+ R++PVVIMSSENIP+RIN+CL  GA  F  
Sbjct: 85  MKVSLIITDYCMPGMTGFELLKKVKESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQ 144

Query: 362 KPVRLSDMSKLKPHIMKSR 418
           KP++L+D+ KLK H+M  R
Sbjct: 145 KPLKLADVEKLKCHLMNCR 163

---

>PRR37_ORYSA (Q689G8) Two-component response regulator-like PRR37|
           (Pseudo-response regulator 37) (OsPRR37)
          Length = 742

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 40/142 (28%), Positives = 78/142 (54%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VD     R+++  LL+   ++V   ++G +A  +L                 D++ +
Sbjct: 64  VLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLE----------------DMQNS 107

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           ++L++T+  MPG++G  LL +I   +  ++IPV++MSS +    + +CL +GA +F +KP
Sbjct: 108 IDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKP 167

Query: 368 VRLSDMSKLKPHIMKSRCKEHS 433
           +R +++  L  H+ + RC   S
Sbjct: 168 IRKNELKNLWQHVWR-RCHSSS 188

---

>PRR73_ORYSA (Q689G4) Two-component response regulator-like PRR73|
           (Pseudo-response regulator 73) (OsPRR73)
          Length = 767

 Score = 73.2 bits (178), Expect = 6e-13
 Identities = 41/142 (28%), Positives = 76/142 (53%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL V++    R+++  LL+   ++V   ++G  A Q L                 D++ +
Sbjct: 83  VLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLE----------------DLQNH 126

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           ++L++T+  MP ++G  LL KI      +DIPV++MSS +    + +CL +GA +F +KP
Sbjct: 127 IDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKP 186

Query: 368 VRLSDMSKLKPHIMKSRCKEHS 433
           +R +++  L  H+ + RC   S
Sbjct: 187 IRKNELKNLWQHVWR-RCHSSS 207

---

>APRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7|
           (Pseudo-response regulator 7)
          Length = 727

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 41/142 (28%), Positives = 77/142 (54%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL V++    R ++  LL+  S++V    +G +A + L                 D+  +
Sbjct: 80  VLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLE----------------DLNNH 123

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           +++++T+  MP ++G  LL KI    S R+IPV++MSS +    + +CL +GA +F +KP
Sbjct: 124 IDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKP 183

Query: 368 VRLSDMSKLKPHIMKSRCKEHS 433
           +R +++  L  H+ + RC+  S
Sbjct: 184 IRKNELKILWQHVWR-RCQSSS 204

---

>ARR21_ARATH (Q9LYP5) Putative two-component response regulator ARR21|
          Length = 592

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +V+ VDD  +   ++ R+L+ S ++V  VD   KAL  L +  +                
Sbjct: 17  NVMVVDDDHVFLDIMSRMLQHSKYRVIAVDDPKKALSTLKIQRD---------------- 60

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
           N++LIITDY MPGM G  L K+I  +  F ++PV++MSS+   ++    L  GA  F  K
Sbjct: 61  NIDLIITDYYMPGMNGLQLKKQI--TQEFGNLPVLVMSSDT--NKEEESLSCGAMGFIPK 116

Query: 365 PVRLSDMSKLKPHIMKSR-------CKEHSHEDQDL 451
           P+  +D++K+    + ++         E +H+D D+
Sbjct: 117 PIHPTDLTKIYQFALSNKRNGKSTLSTEQNHKDADV 152

---

>ARR12_ARATH (P62598) Two-component response regulator ARR12|
          Length = 596

 Score = 69.3 bits (168), Expect = 9e-12
 Identities = 41/137 (29%), Positives = 72/137 (52%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VLAVDD     K++E LL+   + VTT +   KAL+ L  +                   
Sbjct: 19  VLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKN----------------K 62

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +L+I+D  MP M G+ LL+ +       D+PV+++S+ + P  + + +  GA ++ LKP
Sbjct: 63  FDLVISDVDMPDMDGFKLLELVGLEM---DLPVIMLSAHSDPKYVMKGVTHGACDYLLKP 119

Query: 368 VRLSDMSKLKPHIMKSR 418
           VR+ ++  +  H+++SR
Sbjct: 120 VRIEELKNIWQHVVRSR 136

---

>ARR11_ARATH (Q9FXD6) Two-component response regulator ARR11 (Receiver-like|
           protein 3)
          Length = 521

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 39/140 (27%), Positives = 75/140 (53%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDD     K++E++LK  S++VTT     +AL+ L    +                 
Sbjct: 13  VLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKD----------------G 56

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +++I+D  MP M G+ LL+ +       D+PV++MS +   SR+ + ++ GA ++ LKP
Sbjct: 57  YDIVISDVNMPDMDGFKLLEHVGLEL---DLPVIMMSVDGETSRVMKGVQHGACDYLLKP 113

Query: 368 VRLSDMSKLKPHIMKSRCKE 427
           +R+ ++  +  H+++ + +E
Sbjct: 114 IRMKELKIIWQHVLRKKLQE 133

---

>APRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3|
           (Pseudo-response regulator 3)
          Length = 495

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 42/142 (29%), Positives = 73/142 (51%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL V++    R ++  LLK  S++VT V    +A + L                 D +  
Sbjct: 66  VLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILE----------------DEKSC 109

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           ++L++T+  MP  +G  LL KI    + ++IPV++MSS +    + +CL  GA +F +KP
Sbjct: 110 IDLVLTEVDMPVHSGTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKP 169

Query: 368 VRLSDMSKLKPHIMKSRCKEHS 433
           +R +++  L  H+ + RC   S
Sbjct: 170 IRKNELKNLWQHVWR-RCHSSS 190

---

>APRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5|
           (Pseudo-response regulator 5)
          Length = 558

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 39/135 (28%), Positives = 74/135 (54%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL V+     R++I  LL+  S++V  V  G KA + L    E                +
Sbjct: 52  VLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPE----------------S 95

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           V+LI+T+  +P ++GY LL  I E    ++IPV++MS+++  + + +C+ +GA ++ +KP
Sbjct: 96  VDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSTQDSVNTVYKCMLKGAADYLVKP 155

Query: 368 VRLSDMSKLKPHIMK 412
           +R +++  L  H+ +
Sbjct: 156 LRRNELRNLWQHVWR 170

---

>PRR95_ORYSA (Q689G6) Two-component response regulator-like PRR95|
           (Pseudo-response regulator 95) (OsPRR95)
          Length = 623

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
 Frame = +2

Query: 20  DDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVNVNLI 199
           DDS   R +I  LL+   ++V     G KA   L                 +   N++L+
Sbjct: 51  DDST--RHIICALLRKCGYRVAAASDGVKAWDILK----------------EKSFNIDLV 92

Query: 200 ITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPVRLS 379
           +T+  +P M+G+ LL  I E  + ++IPV++MSS +  S + +C+ +GA +F +KP+R +
Sbjct: 93  LTEVELPLMSGFLLLSTIMEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKN 152

Query: 380 DMSKLKPHIMKSRCK------EHSHEDQDL 451
           ++  L  H+ + +        +H+ ++ +L
Sbjct: 153 ELRNLWQHVWRKQLSSGVLDVQHTQQEDNL 182

---

>APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9|
           (Pseudo-response regulator 9)
          Length = 468

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 35/135 (25%), Positives = 71/135 (52%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL V+     R++I  LL+   ++V  V  G  A + L   +                 N
Sbjct: 39  VLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSH----------------N 82

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           ++LI+T+  +P ++G+ LL  + E  + ++IPV++MSS++    + +C+  GA ++ +KP
Sbjct: 83  IDLILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKP 142

Query: 368 VRLSDMSKLKPHIMK 412
           +R +++  L  H+ +
Sbjct: 143 MRKNELKNLWQHVWR 157

---

>CHEY_HELPY (P71403) Chemotaxis protein cheY homolog|
          Length = 124

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +L VDDS   R++I+  L    ++ V   + G +A +                 +LD   
Sbjct: 3   LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWE-----------------KLDANA 45

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
           +  ++ITD+ MP M G DL+KK++  S F++IP++++++E   + +   L+ G N + +K
Sbjct: 46  DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVK 105

Query: 365 P 367
           P
Sbjct: 106 P 106

---

>REGA_DICDI (Q23917) 3',5'-cyclic-nucleotide phosphodiesterase regA (EC|
           3.1.4.17) (PDEase regA)
          Length = 793

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L  DD  + RK++  LLK   + VT V +G  A +++    +                 
Sbjct: 162 ILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQ----------------K 205

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSR-INRCLEEGANEFFLK 364
            +L++TD  MP +TG+DLL++I +    R IPV++MS   +  +  N  ++ G  +F  K
Sbjct: 206 YDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTK 265

Query: 365 PVRLSDMSKLKPHIMKSRCKEHSHED 442
           P+    + K    +++S  +    E+
Sbjct: 266 PIAKELLKKKIDTVLQSIWQRRKEEE 291

---

>ARR10_ARATH (O49397) Two-component response regulator ARR10 (Receiver-like|
           protein 4)
          Length = 552

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VLAVDD     ++++ LL+   + VTT +    AL+ L  +                   
Sbjct: 19  VLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKN----------------K 62

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +L+I+D  MP M G+ LL+ +       D+PV+++S+ + P  + + ++ GA ++ LKP
Sbjct: 63  FDLVISDVDMPDMDGFKLLELVGLEM---DLPVIMLSAHSDPKYVMKGVKHGACDYLLKP 119

Query: 368 VRLSDMSKLKPHIM-KSRCKEH 430
           VR+ ++  +  H++ KS+ K++
Sbjct: 120 VRIEELKNIWQHVVRKSKLKKN 141

---

>ARR1_ARATH (Q940D0) Two-component response regulator ARR1|
          Length = 690

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 2/144 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFL--GLHAEDASISSVHADQLDVE 181
           VL VDD      ++ER+L+T  ++VT  +    AL  L    H  D  IS VH       
Sbjct: 39  VLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVH------- 91

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
                      MP M G+ LL+ +       D+PV++MS+++  S + + +  GA ++ +
Sbjct: 92  -----------MPDMDGFKLLEHVGLEM---DLPVIMMSADDSKSVVLKGVTHGAVDYLI 137

Query: 362 KPVRLSDMSKLKPHIMKSRCKEHS 433
           KPVR+  +  +  H+++ R  E S
Sbjct: 138 KPVRMEALKNIWQHVVRKRRSEWS 161

---

>CHEY_HELPJ (Q9ZM64) Chemotaxis protein cheY homolog|
          Length = 124

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +L VDDS   R++I+  L    ++ V   + G +A +                 +LD   
Sbjct: 3   LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWE-----------------KLDANA 45

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
           +  ++ITD+ MP M G DL+KK++  + F++IP++++++E   + +   L+ G N + +K
Sbjct: 46  DTKVLITDWNMPEMNGLDLVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVK 105

Query: 365 P 367
           P
Sbjct: 106 P 106

---

>ARR19_ARATH (Q9M9B9) Putative two-component response regulator ARR19|
          Length = 407

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 42/138 (30%), Positives = 70/138 (50%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +VL VD +      +++++K  ++QV+      KAL FL         S  H        
Sbjct: 35  NVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFL--------TSCKH-------- 78

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
            +N++I D+ MPG+ G   LK I   +S  D+PVVIMS +N    + +    GA ++ +K
Sbjct: 79  EINIVIWDFHMPGIDGLQALKSI---TSKLDLPVVIMSDDNQTESVMKATFYGACDYVVK 135

Query: 365 PVRLSDMSKLKPHIMKSR 418
           PV+   M+ +  HI++ R
Sbjct: 136 PVKEEVMANIWQHIVRKR 153

---

>RPFC_XANCP (P0C0F6) Sensory/regulatory protein rpfC (EC 2.7.13.3)|
          Length = 677

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L  DD   +R +++RLL+ +  +V  V+   + L  +     DA I  +H         
Sbjct: 415 MLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--------- 465

Query: 188 VNLIITDYCMPGMTGYDLLKKIK--ESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
                    MPGM G D+LK+++  ++S  R  PVV++S++  P  I  C + GA  F  
Sbjct: 466 ---------MPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLA 516

Query: 362 KPV 370
           KPV
Sbjct: 517 KPV 519

---

>RPFC_XANC8 (P0C0F7) Sensory/regulatory protein rpfC (EC 2.7.13.3)|
          Length = 677

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L  DD   +R +++RLL+ +  +V  V+   + L  +     DA I  +H         
Sbjct: 415 MLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--------- 465

Query: 188 VNLIITDYCMPGMTGYDLLKKIK--ESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
                    MPGM G D+LK+++  ++S  R  PVV++S++  P  I  C + GA  F  
Sbjct: 466 ---------MPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLA 516

Query: 362 KPV 370
           KPV
Sbjct: 517 KPV 519

---

>ARR14_ARATH (Q8L9Y3) Two-component response regulator ARR14|
          Length = 382

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 34/138 (24%), Positives = 68/138 (49%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD      ++E++L    +QVT       AL  L    +                +
Sbjct: 13  ILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKD----------------S 56

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +L+++D  MPGM GY+LL+++       D+PV++MS +   + +   +  GA ++ +KP
Sbjct: 57  FDLVLSDVHMPGMNGYNLLQQVGLLEM--DLPVIMMSVDGRTTTVMTGINHGACDYLIKP 114

Query: 368 VRLSDMSKLKPHIMKSRC 421
           +R  ++  +  H+++ +C
Sbjct: 115 IRPEELKNIWQHVVRRKC 132

---

>CHEY_PSEAE (Q51455) Chemotaxis protein cheY|
          Length = 124

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTT-VDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +L VDD    R++I+ LL+   F  T   D GT AL  L            H+   D   
Sbjct: 3   ILIVDDFSTMRRIIKNLLRDLGFTNTAEADDGTTALPML------------HSGNFD--- 47

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
               ++TD+ MPGMTG DLL+ ++     + +PV+++++E    +I    + G N + +K
Sbjct: 48  ---FLVTDWNMPGMTGIDLLRAVRADERLKHLPVLMVTAEAKRDQIIEAAQAGVNGYVVK 104

Query: 365 P 367
           P
Sbjct: 105 P 105

---

>PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1|
           (Pseudo-response regulator 1) (OsPRR1)
          Length = 518

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 34/137 (24%), Positives = 66/137 (48%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L  D      + + RLL   S+QVT   S  + +  L   A +                
Sbjct: 30  ILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGE---------------- 73

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           +++I+ +  +P    + +LK I  +   R IP+++MS+ +  S + +CL  GA E+ +KP
Sbjct: 74  IDIILAEVDLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKP 133

Query: 368 VRLSDMSKLKPHIMKSR 418
           +R++++  L  H+ + R
Sbjct: 134 LRMNELLNLWTHVWRRR 150

---

>ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Receiver-like|
           protein 5)
          Length = 664

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 36/140 (25%), Positives = 69/140 (49%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDD      ++ER+L T  ++VT  +    AL  L  +                   
Sbjct: 30  VLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKN----------------G 73

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +++I+D  MP M G+ LL+ +       D+PV++MS+++  S + + +  GA ++ +KP
Sbjct: 74  FDIVISDVHMPDMDGFKLLEHVGLEM---DLPVIMMSADDSKSVVLKGVTHGAVDYLIKP 130

Query: 368 VRLSDMSKLKPHIMKSRCKE 427
           VR+  +  +  H+++ +  E
Sbjct: 131 VRIEALKNIWQHVVRKKRNE 150

---

>ARR13_ARATH (Q9ZVD3) Putative two-component response regulator ARR13|
          Length = 572

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQ---VTTVDSGTKALQFLGLHAEDASISSVHADQLD 175
           +V+ VDD+ +   +  R+L+ S ++   V  VD   KAL  L              +Q D
Sbjct: 17  NVMVVDDNRVFLDIWSRMLEKSKYREITVIAVDYPKKALSTL-------------KNQRD 63

Query: 176 VEVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEF 355
              N++LIITDY MPGM G  L K+I  +  F ++ V++MSS+  P++    L  GA  F
Sbjct: 64  ---NIDLIITDYYMPGMNGLQLKKQI--TQEFGNLSVLVMSSD--PNKEEESLSCGAMGF 116

Query: 356 FLKPVRLSDMSKL 394
             KP+  +D+ K+
Sbjct: 117 IPKPIAPTDLPKI 129

---

>CHEY_CAMJE (P71129) Chemotaxis protein cheY homolog|
          Length = 130

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLL-KTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +L VDDS   R++I+  L +     V   + G +A                  D L    
Sbjct: 3   LLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAW-----------------DLLTKNE 45

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
           +V ++ITD+ MP M G +L+KK++    + D+P++++++E   + +   L+ G N + +K
Sbjct: 46  DVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVK 105

Query: 365 PVRLSDMSKLKPHIMKSRCKE 427
           P          P ++K + ++
Sbjct: 106 P--------FTPQVLKEKLED 118

---

>PLED_CAUCR (Q9A5I5) Response regulator pleD (Stalked cell|
           differentiation-controlling protein) [Includes:
           Diguanylate cyclase (EC 4.6.1.-) (DGC)]
          Length = 454

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD   + +L+E  L    ++V+T   G  AL        D                
Sbjct: 5   ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPD---------------- 48

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             +I+ D  MPGM G+ + +K+K+  + R IPVV++++ +      + LE GA++F  KP
Sbjct: 49  --IILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKP 106

Query: 368 V-------RLSDMSKLKPHIMKSRCKEHS 433
           +       R+  +++ K  I + R +E S
Sbjct: 107 IDDVMLFARVRSLTRFKLVIDELRQREAS 135



 Score = 34.3 bits (77), Expect = 0.32
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +2

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           V+L+I +       G      ++     R +PV+ M   +   R+ + LE G N+   +P
Sbjct: 196 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 255

Query: 368 VRLSDMS-KLKPHIMKSRCKEHSHEDQD 448
           +   ++S ++K  I + R  ++   + D
Sbjct: 256 IDPQELSARVKTQIQRKRYTDYLRNNLD 283

---

>CHEV_BACSU (P37599) Chemotaxis protein cheV|
          Length = 303

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           ++ V+DS L  +L++  LK + +  + + ++G +A +++   AE+         + D+  
Sbjct: 177 LIIVEDSPLLMRLLQDELKEAGYNNIASFENGKEAYEYIMNLAEN---------ETDLSK 227

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
            +++IITD  MP M G+ L K +KE+    D+PV+I SS       +R    GA+E   K
Sbjct: 228 QIDMIITDIEMPKMDGHRLTKLLKENPKSSDVPVMIFSSLITDDLRHRGEVVGADEQISK 287

Query: 365 PVRLSDMSK 391
           P  +SD+ K
Sbjct: 288 P-EISDLIK 295

---

>RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis|
            regulator component C)
          Length = 948

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 34/128 (26%), Positives = 61/128 (47%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            +L VDD  ++R+L+   L +  +Q  T + G  AL  L  +A                  
Sbjct: 827  ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNA------------------ 868

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            ++++++D  MP M GY L ++I++      +PVV +++  +     RCLE G +    KP
Sbjct: 869  IDIVLSDVNMPNMDGYRLTQRIRQLGL--TLPVVGVTANALAEEKQRCLESGMDSCLSKP 926

Query: 368  VRLSDMSK 391
            V L  + +
Sbjct: 927  VTLDALKQ 934

---

>APRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1|
           (Pseudo-response regulator 1) (Timing of CAB expression
           1) (ABI3-interacting protein 1)
          Length = 618

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 33/137 (24%), Positives = 63/137 (45%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L  D+       +  LL   S+QVT V S  + +  L     D                
Sbjct: 21  ILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPD---------------- 64

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           +++I+ +  +P   G  +L+ I      R IPV++MS ++    + +CL+ GA ++ +KP
Sbjct: 65  IDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKP 124

Query: 368 VRLSDMSKLKPHIMKSR 418
           +R +++  L  H+ + R
Sbjct: 125 LRTNELLNLWTHMWRRR 141

---

>RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis|
            regulator component C)
          Length = 948

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 34/123 (27%), Positives = 59/123 (47%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            +L VDD  ++R+L+   L +  +Q  T + G  AL  L  +A                  
Sbjct: 827  ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNA------------------ 868

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            ++++++D  MP M GY L ++I++      +PVV +++  +     RCLE G +    KP
Sbjct: 869  IDIVLSDVNMPNMDGYRLTQRIRQLGL--TLPVVGVTANALAEEKQRCLESGMDSCLSKP 926

Query: 368  VRL 376
            V L
Sbjct: 927  VTL 929

---

>ARR18_ARATH (Q9FGT7) Two-component response regulator ARR18|
          Length = 635

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 38/142 (26%), Positives = 70/142 (49%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VLAVDD+    + +E LL    + VT      KAL+ L    E++++             
Sbjct: 20  VLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEML---RENSNM------------- 63

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +L+I+D  MP   G+ LL    E     D+PV+++S+ +    + + +  GA ++ +KP
Sbjct: 64  FDLVISDVEMPDTDGFKLL----EIGLEMDLPVIMLSAHSDYDSVMKGIIHGACDYLVKP 119

Query: 368 VRLSDMSKLKPHIMKSRCKEHS 433
           V L ++  +  H++K   K ++
Sbjct: 120 VGLKELQNIWHHVVKKNIKSYA 141

---

>ARR20_ARATH (Q9LZJ8) Putative two-component response regulator ARR20|
          Length = 426

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 36/124 (29%), Positives = 61/124 (49%)
 Frame = +2

Query: 47  IERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVNVNLIITDYCMPGM 226
           ++ L+   S+QVT  +SG +A+ FL  +  +                ++L+I D+ MP +
Sbjct: 54  LKNLMTQYSYQVTKYESGEEAMAFLMKNKHE----------------IDLVIWDFHMPDI 97

Query: 227 TGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPVRLSDMSKLKPHI 406
            G D L  I +     D+PVVIMS E     +   ++ GA +F +KPV    ++ L  H+
Sbjct: 98  NGLDALNIIGKQM---DLPVVIMSHEYKKETVMESIKYGACDFLVKPVSKEVIAVLWRHV 154

Query: 407 MKSR 418
            + R
Sbjct: 155 YRKR 158

---

>YCF27_CYACA (Q9TLQ4) Probable transcriptional regulator ycf27 (OmpR-like|
           protein)
          Length = 249

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           H+L VDD    RK+++  L    + V+T  +G +AL+    H                  
Sbjct: 13  HLLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTH------------------ 54

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS-ENIPSRINRCLEEGANEFFL 361
           +++LII D  MP + GY + ++I++ S   DIP++++++ E++  ++   LE GA+++ +
Sbjct: 55  SIDLIILDVMMPKLDGYGVCQEIRKES---DIPIIMLTALEDVLDKVTG-LELGADDYVI 110

Query: 362 KP 367
           KP
Sbjct: 111 KP 112

---

>RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Capsular synthesis|
            regulator component C)
          Length = 949

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 32/123 (26%), Positives = 59/123 (47%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            +L VDD  ++R+L+   L +  +Q  T + G  AL  L  +                  +
Sbjct: 827  ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN------------------H 868

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            ++++++D  MP M GY L ++I++      +PV+ +++  +     RCLE G +    KP
Sbjct: 869  IDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPVIGVTANALAEEKQRCLESGMDSCLSKP 926

Query: 368  VRL 376
            V L
Sbjct: 927  VTL 929

---

>RCP1_SYNY3 (Q55169) Response regulator rcp1|
          Length = 147

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSF--QVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           +L V+DS  D +L++ +LKTS+   ++  +  G  A+ FL    E            +  
Sbjct: 11  ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGE-----------YENS 59

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
              NLI+ D  +P   G ++L +IK++   + IPVV++++ +    +    E   N +  
Sbjct: 60  PRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT 119

Query: 362 KPVRLSDMSKL 394
           K   L D+ K+
Sbjct: 120 KSRNLKDLFKM 130

---

>RPFG_XANC8 (Q4UU85) Response regulator rpfG|
          Length = 378

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 24/78 (30%), Positives = 43/78 (55%)
 Frame = +2

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           V+L++ DY MPGM G +  ++++   S RDIP+++++           LE G  +F +KP
Sbjct: 74  VDLLLLDYRMPGMDGLEFARRLRRLPSHRDIPIILITIVGDEPIRQAALEAGVIDFLVKP 133

Query: 368 VRLSDMSKLKPHIMKSRC 421
           +R        P  +++RC
Sbjct: 134 IR--------PRELRARC 143

---

>YCF27_CYAPA (P48259) Probable transcriptional regulator ycf27 (OmpR-like|
           protein)
          Length = 239

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD +  R+++E  L    ++V T   G +AL    L                   +
Sbjct: 8   ILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLE------------------H 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS-ENIPSRINRCLEEGANEFFLK 364
            NL++ D  MP + GY + +++++ S   DIP++++++  ++  RI   LE GA+++ +K
Sbjct: 50  PNLVVLDVMMPKLDGYGVCQELRKES---DIPIIMLTALGDVADRITG-LELGADDYVVK 105

Query: 365 P 367
           P
Sbjct: 106 P 106

---

>PILG_PSEAE (P46384) Protein pilG|
          Length = 135

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           V+ +DDS   R+  E LLK     V T   G  AL         A I+  H         
Sbjct: 10  VMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDAL---------AKIADTHP-------- 52

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            N+I  D  MP + GY     IK +S+F+  PV+++SS++      +    G++++  KP
Sbjct: 53  -NIIFVDIMMPRLDGYQTCALIKNNSAFKSTPVIMLSSKDGLFDKAKGRIVGSDQYLTKP 111

Query: 368 VRLSD-MSKLKPHI 406
               + +  +K H+
Sbjct: 112 FSKEELLGAIKAHV 125

---

>YKOG_BACSU (O34903) Hypothetical sensory transduction protein ykoG|
          Length = 228

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 30/128 (23%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           H+L V+D     ++++  L+   + VT   +GT+ L        DA+           E 
Sbjct: 5   HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGL--------DAA----------AEG 46

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS-ENIPSRINRCLEEGANEFFL 361
             +L++ D  +PG++G ++L++++++ S    PV+++++ ++IP ++   L+ GAN++  
Sbjct: 47  GYSLVLLDVMLPGLSGLEVLRRLRKTDS--QTPVILLTARDSIPDKVTG-LDIGANDYVT 103

Query: 362 KPVRLSDM 385
           KP  + ++
Sbjct: 104 KPFEIEEL 111

---

>PHOB_SHIFL (P45607) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +2

Query: 134 EDASISSVHADQLDVEVNV------NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIM 295
           E      V A+  D  VN       +LI+ D+ +PG +G   +K +K  S  RDIPVV++
Sbjct: 23  EQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVML 82

Query: 296 SSENIPSRINRCLEEGANEFFLKP 367
           ++        R LE GA+++  KP
Sbjct: 83  TARGEEEDRVRGLETGADDYITKP 106

---

>PHOB_SHIDY (P45606) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +2

Query: 134 EDASISSVHADQLDVEVNV------NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIM 295
           E      V A+  D  VN       +LI+ D+ +PG +G   +K +K  S  RDIPVV++
Sbjct: 23  EQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVML 82

Query: 296 SSENIPSRINRCLEEGANEFFLKP 367
           ++        R LE GA+++  KP
Sbjct: 83  TARGEEEDRVRGLETGADDYITKP 106

---

>PHOB_ECOLI (P0AFJ5) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +2

Query: 134 EDASISSVHADQLDVEVNV------NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIM 295
           E      V A+  D  VN       +LI+ D+ +PG +G   +K +K  S  RDIPVV++
Sbjct: 23  EQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVML 82

Query: 296 SSENIPSRINRCLEEGANEFFLKP 367
           ++        R LE GA+++  KP
Sbjct: 83  TARGEEEDRVRGLETGADDYITKP 106

---

>PHOB_ECO57 (P0AFJ6) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +2

Query: 134 EDASISSVHADQLDVEVNV------NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIM 295
           E      V A+  D  VN       +LI+ D+ +PG +G   +K +K  S  RDIPVV++
Sbjct: 23  EQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVML 82

Query: 296 SSENIPSRINRCLEEGANEFFLKP 367
           ++        R LE GA+++  KP
Sbjct: 83  TARGEEEDRVRGLETGADDYITKP 106

---

>SPAR_BACSU (P33112) Subtilin biosynthesis regulatory protein spaR|
          Length = 220

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +LAVDD      LI+ +L+    QV  +D                    VH    DV   
Sbjct: 4   ILAVDDEKDILVLIQNILRRDQHQVDILD-------------------HVHGQPPDVFQG 44

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +LI+ D  MP + G++L K+I+      D P++ ++++     I + L  G +++  KP
Sbjct: 45  YDLILLDVMMPDIDGFELCKQIR---PLVDCPILFLTAKTEEEAIVKGLITGGDDYITKP 101

Query: 368 VRLSDMS-KLKPHIMKSRCKEH 430
             + ++S ++  H+ + R  +H
Sbjct: 102 FGVRELSARVNAHLRRERRDKH 123

---

>PHOB_HAEIN (P45189) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 231

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 18/64 (28%), Positives = 39/64 (60%)
 Frame = +2

Query: 176 VEVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEF 355
           ++ N  LI+ D+ +PG +G   ++ IK+  S+  IP++++++++       CL  GA+++
Sbjct: 42  IKENPKLILLDWMLPGRSGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDY 101

Query: 356 FLKP 367
             KP
Sbjct: 102 ITKP 105

---

>CHEY_YERPE (Q8D0P1) Chemotaxis protein cheY|
          Length = 128

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
 Frame = +2

Query: 11  LAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           L VDD    R+++  LLK   F  V   + G  AL  L     D                
Sbjct: 8   LVVDDFSTMRRIVRNLLKELGFHNVEEAEDGVDALNKLRAGGFD---------------- 51

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              +++D+ MP M G DLLK I+   +   +PV+++++E     I    + GA+ + +KP
Sbjct: 52  --FVVSDWNMPNMDGLDLLKTIRTDGALATLPVLMVTAEAKKENIIAAAQAGASGYVVKP 109

---

>YCF27_GUITH (O78428) Probable transcriptional regulator ycf27 (OmpR-like|
           protein)
          Length = 254

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDD    RK++E  L    + V T   G +AL               H +  DV   
Sbjct: 17  VLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLF------------HQEMPDV--- 61

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS-ENIPSRINRCLEEGANEFFLK 364
              +I D  MP + GY + ++I++ S   D+P++++++  ++  RI   LE GA+++ +K
Sbjct: 62  ---VILDIMMPKLDGYGVCQEIRKDS---DVPIIMLTALGDVADRITG-LELGADDYVVK 114

Query: 365 P 367
           P
Sbjct: 115 P 115

---

>PHOB_KLEPN (P45605) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
 Frame = +2

Query: 134 EDASISSVHADQLDVEVNV------NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIM 295
           E      V A+  D  VN       +LI+ D+ +PG +G   +K +K  +  RDIPVV++
Sbjct: 23  EQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQFIKLLKREAMTRDIPVVML 82

Query: 296 SSENIPSRINRCLEEGANEFFLKP 367
           ++        R LE GA+++  KP
Sbjct: 83  TARGEEEDRVRGLETGADDYITKP 106

---

>MTRA_MYCTU (P0A5Z4) DNA-binding response regulator mtrA|
          Length = 225

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 30/149 (20%), Positives = 70/149 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD     +++  +L+   F    +  GT+AL  +                   E+ 
Sbjct: 5   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR------------------ELR 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +L++ D  +PGM G D+ + ++  S    +P+V+++++     +   LE GA+++ +KP
Sbjct: 47  PDLVLLDLMLPGMNGIDVCRVLRADSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKP 103

Query: 368 VRLSDMSKLKPHIMKSRCKEHSHEDQDLL 454
            +  ++       +++R + +  E  ++L
Sbjct: 104 FKPKELVAR----VRARLRRNDDEPAEML 128

---

>MTRA_MYCPA (Q93CB8) DNA-binding response regulator mtrA|
          Length = 225

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 30/149 (20%), Positives = 70/149 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD     +++  +L+   F    +  GT+AL  +                   E+ 
Sbjct: 5   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR------------------ELR 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +L++ D  +PGM G D+ + ++  S    +P+V+++++     +   LE GA+++ +KP
Sbjct: 47  PDLVLLDLMLPGMNGIDVCRVLRADSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKP 103

Query: 368 VRLSDMSKLKPHIMKSRCKEHSHEDQDLL 454
            +  ++       +++R + +  E  ++L
Sbjct: 104 FKPKELVAR----VRARLRRNDDEPAEML 128

---

>MTRA_MYCLE (Q9CCJ2) DNA-binding response regulator mtrA|
          Length = 225

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 30/149 (20%), Positives = 70/149 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD     +++  +L+   F    +  GT+AL  +                   E+ 
Sbjct: 5   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR------------------ELR 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +L++ D  +PGM G D+ + ++  S    +P+V+++++     +   LE GA+++ +KP
Sbjct: 47  PDLVLLDLMLPGMNGIDVCRVLRADSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKP 103

Query: 368 VRLSDMSKLKPHIMKSRCKEHSHEDQDLL 454
            +  ++       +++R + +  E  ++L
Sbjct: 104 FKPKELVAR----VRARLRRNDDEPAEML 128

---

>MTRA_MYCBO (P0A5Z5) DNA-binding response regulator mtrA|
          Length = 225

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 30/149 (20%), Positives = 70/149 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD     +++  +L+   F    +  GT+AL  +                   E+ 
Sbjct: 5   ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR------------------ELR 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +L++ D  +PGM G D+ + ++  S    +P+V+++++     +   LE GA+++ +KP
Sbjct: 47  PDLVLLDLMLPGMNGIDVCRVLRADSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKP 103

Query: 368 VRLSDMSKLKPHIMKSRCKEHSHEDQDLL 454
            +  ++       +++R + +  E  ++L
Sbjct: 104 FKPKELVAR----VRARLRRNDDEPAEML 128

---

>CHEY_YEREN (Q93P00) Chemotaxis protein cheY|
          Length = 128

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
 Frame = +2

Query: 11  LAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           L VDD    R+++  LLK   F  V   + G  AL  L     D                
Sbjct: 8   LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLRTGGFD---------------- 51

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              +++D+ MP M G DLLK I+   +   +PV+++++E     I    + GA+ + +KP
Sbjct: 52  --FVVSDWNMPNMDGLDLLKTIRADGALGTLPVLMVTAEAKKENIIAAAQAGASGYVVKP 109

---

>VIRG_AGRTU (Q44444) Regulatory protein virG|
          Length = 267

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVL VDD V  R LI   L   +F+VT V   T+  + L     D            V V
Sbjct: 29  HVLLVDDDVAMRHLIIEYLTIHAFKVTAVADSTQFTRVLSSATVDV-----------VVV 77

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRIN-RCLEEGANEFFL 361
           ++NL+  D       G ++++ +   S   DIP++I+S + +        LE GA++F  
Sbjct: 78  DLNLVRED-------GLEIVRNLAAKS---DIPIIIISGDRLEETDKVVALELGASDFIA 127

Query: 362 KP-------VRLSDMSKLKPHIMKSR 418
           KP        R+    +++P++++S+
Sbjct: 128 KPFSIREFLARIRVALRVRPNVVRSK 153

---

>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)|
          Length = 777

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDDS + R     L+K     V     G +A                    + V+ N
Sbjct: 661 VLLVDDSPIARATEGALVKALGHSVEEAQDGEEAY-------------------VKVQNN 701

Query: 188 V-NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
             +LI+TD  MP + G+ L +++K + +   IPV+I+SS   P    R L+ GA+ + +K
Sbjct: 702 TYDLILTDVQMPKLDGFSLARRLKSTPAVARIPVIILSSLASPEDKRRGLDAGADAYLVK 761

---

>NTRC_RHIME (P10577) Nitrogen assimilation regulatory protein|
          Length = 484

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 29/126 (23%), Positives = 57/126 (45%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L  DD    R ++ + L  + + V    +     +++     D                
Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGD---------------- 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             L++TD  MP    +DLL +IK++    D+PV++MS++N      +  E+GA ++  KP
Sbjct: 50  --LVVTDVVMPDENAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105

Query: 368 VRLSDM 385
             L+++
Sbjct: 106 FDLTEL 111

---

>NTRC_ECOLI (P0AFB8) Nitrogen regulation protein NR(I)|
          Length = 469

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 33/125 (26%), Positives = 57/125 (45%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           V  VDD    R ++ER L  +    TT ++G + L+ L     D                
Sbjct: 6   VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPD---------------- 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             ++++D  MPGM G  LLK+IK+      +PV+IM++ +         ++GA ++  KP
Sbjct: 50  --VLLSDIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105

Query: 368 VRLSD 382
             + +
Sbjct: 106 FDIDE 110

---

>NTRC_ECO57 (P0AFB9) Nitrogen regulation protein NR(I)|
          Length = 469

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 33/125 (26%), Positives = 57/125 (45%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           V  VDD    R ++ER L  +    TT ++G + L+ L     D                
Sbjct: 6   VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPD---------------- 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             ++++D  MPGM G  LLK+IK+      +PV+IM++ +         ++GA ++  KP
Sbjct: 50  --VLLSDIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105

Query: 368 VRLSD 382
             + +
Sbjct: 106 FDIDE 110

---

>CHEY_SALTY (P0A2D5) Chemotaxis protein cheY|
          Length = 128

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
 Frame = +2

Query: 11  LAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           L VDD    R+++  LLK   F  V   + G  AL  L                      
Sbjct: 8   LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG------------------ 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              II+D+ MP M G +LLK I+  S+   +PV+++++E     I    + GA+ + +KP
Sbjct: 50  FGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109

---

>CHEY_SALTI (P0A2D6) Chemotaxis protein cheY|
          Length = 128

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
 Frame = +2

Query: 11  LAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           L VDD    R+++  LLK   F  V   + G  AL  L                      
Sbjct: 8   LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG------------------ 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              II+D+ MP M G +LLK I+  S+   +PV+++++E     I    + GA+ + +KP
Sbjct: 50  FGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109

---

>VIRG_AGRT9 (P62722) Regulatory protein virG|
          Length = 267

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 8/146 (5%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVL VDD V  R LI   L   +F+VT V   T+  + L                     
Sbjct: 29  HVLLVDDDVAMRHLIIEYLTIHAFKVTAVADSTQFTRVLS------------------SA 70

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRIN-RCLEEGANEFFL 361
            V++++ D  +    G ++++ +   S   DIP++I+S + +        LE GA++F  
Sbjct: 71  TVDVVVVDLNLGREDGLEIVRNLAAKS---DIPIIIISGDRLEETDKVVALELGASDFIA 127

Query: 362 KP-------VRLSDMSKLKPHIMKSR 418
           KP        R+    +++P++++S+
Sbjct: 128 KPFSIREFLARIRVALRVRPNVVRSK 153

---

>APRR4_ARATH (Q9FJ16) Putative two-component response regulator-like APRR4|
           (Pseudo-response regulator 4)
          Length = 292

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 29/142 (20%), Positives = 62/142 (43%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL  D+      ++ER L+   +QVT  +   KA+  L  H     ++ +  +  +    
Sbjct: 44  VLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEG--- 100

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
                           D+ + + E  S  D+P++I+S ++    + + +  GA ++ +KP
Sbjct: 101 ----------------DIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKP 144

Query: 368 VRLSDMSKLKPHIMKSRCKEHS 433
           +R  D+  +  H++K   +  S
Sbjct: 145 IRPEDLRIVFKHLVKKMRERRS 166

---

>NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein|
          Length = 469

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 33/122 (27%), Positives = 55/122 (45%)
 Frame = +2

Query: 17  VDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVNVNL 196
           VDD    R ++ER L  +    TT +SG + L  L     D                  +
Sbjct: 9   VDDDSSIRWVLERALTGAGLSCTTFESGNEVLDALTTKTPD------------------V 50

Query: 197 IITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPVRL 376
           +++D  MPGM G  LLK+IK+      +PV+IM++ +         ++GA ++  KP  +
Sbjct: 51  LLSDIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108

Query: 377 SD 382
            +
Sbjct: 109 DE 110

---

>DCTD_RHIME (P13632) C4-dicarboxylate transport transcriptional regulatory|
           protein dctD
          Length = 460

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           V  +DD    RK +++ L+ + F V++  S T+AL   GL A+ A I             
Sbjct: 7   VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALA--GLSADFAGI------------- 51

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSE-NIPSRINRCLEEGANEFFLK 364
              +I+D  MPGM G  L +KI       D+P+++++   +IP  + + +++GA +F  K
Sbjct: 52  ---VISDIRMPGMDGLALFRKILALDP--DLPMILVTGHGDIPMAV-QAIQDGAYDFIAK 105

Query: 365 P 367
           P
Sbjct: 106 P 106

---

>YCF27_GALSU (P28257) Probable transcriptional regulator ycf27 (OmpR-like|
           protein)
          Length = 255

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L  DD    R+++E  L    ++V T   G  AL FL  H E                +
Sbjct: 10  ILIADDESSIRRILETRLSIIGYEVLTAPDGRSAL-FL-FHKE----------------H 51

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS-ENIPSRINRCLEEGANEFFLK 364
            NL++ D  MP + GY + ++I++ S   DIP++++++  ++  RI   LE GA+++ +K
Sbjct: 52  PNLVVLDVMMPKIDGYGVCQEIRKES---DIPIIMLTALGDVTDRITG-LELGADDYVVK 107

Query: 365 P 367
           P
Sbjct: 108 P 108

---

>CZCR_RALME (Q44006) Transcriptional activator protein czcR|
          Length = 225

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 35/142 (24%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL V+D     + +++ L  S F V   ++G       GLH  +             E +
Sbjct: 3   VLVVEDEPRTAEYLQKGLSESGFVVDIANNGGD-----GLHMAE-------------ETD 44

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS-ENIPSRINRCLEEGANEFFLK 364
            ++II D  +PGM G+ ++K I+  S   + PV+ +++ +++  R+ R  E GA+++ +K
Sbjct: 45  YDVIILDVMLPGMDGWTVIKSIRSKS---ETPVLFLTALDDVADRV-RGFELGADDYLVK 100

Query: 365 PVRLSD-MSKLKPHIMKSRCKE 427
           P   ++ +++++  + +S  KE
Sbjct: 101 PFAFAELLARIRRCLRQSTSKE 122

---

>YDFI_BACSU (P96686) Sensory transduction protein ydfI|
          Length = 213

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 34/119 (28%), Positives = 63/119 (52%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDD ++ R+ ++ L++T+  Q T +             AE+  ++   AD+L+ ++ 
Sbjct: 4   VLIVDDHLVVREGLKLLIETND-QYTIIGE-----------AENGKVAVRLADELEPDI- 50

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
              I+ D  MP M+G + +K+IKE     D P++I+++ N    +   +E GA  + LK
Sbjct: 51  ---ILMDLYMPEMSGLEAIKQIKEK---HDTPIIILTTYNEDHLMIEGIELGAKGYLLK 103

---

>NTRC_SALTY (P41789) Nitrogen regulation protein NR(I)|
          Length = 469

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 33/125 (26%), Positives = 56/125 (44%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           V  VDD    R ++ER L  +    TT ++G + L  L     D                
Sbjct: 6   VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPD---------------- 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             ++++D  MPGM G  LLK+IK+      +PV+IM++ +         ++GA ++  KP
Sbjct: 50  --VLLSDIRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105

Query: 368 VRLSD 382
             + +
Sbjct: 106 FDIDE 110

---

>NTRC_BRASR (P10576) Nitrogen assimilation regulatory protein|
          Length = 480

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 31/126 (24%), Positives = 55/126 (43%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L  DD    R ++ + L  + ++V    +     +++     D                
Sbjct: 6   ILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGD---------------- 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             L+ITD  MP    +DLL +IK+     ++PV++MS++N      R  E GA E+  KP
Sbjct: 50  --LVITDVVMPDENAFDLLPRIKKMRP--NLPVIVMSAQNTFMTAIRPSERGAYEYLPKP 105

Query: 368 VRLSDM 385
             L ++
Sbjct: 106 FDLKEL 111

---

>CHEY_ENTCL (Q9FAD7) Chemotaxis protein cheY|
          Length = 128

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
 Frame = +2

Query: 11  LAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           L VDD    R+++  LLK   F  V   + G  AL  L                      
Sbjct: 8   LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG------------------ 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              +I+D+ MP M G +LLK I+  +    +PV+++++E     I    + GA+ + +KP
Sbjct: 50  FGFVISDWNMPNMDGLELLKTIRADAGMASMPVLMVTAEAKKENIIAAAQAGASGYVVKP 109

---

>RESD_BACSU (P35163) Transcriptional regulatory protein resD|
          Length = 240

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 25/120 (20%), Positives = 58/120 (48%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD    R+L+   L+  ++ +   ++G +A+                     +E N
Sbjct: 9   ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIA------------------KGLEAN 50

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +LI+ D  MPG  G ++ ++I+E  +    P+++++++   +   +  E G +++ +KP
Sbjct: 51  YDLILLDLMMPGTDGIEVCRQIREKKA---TPIIMLTAKGEEANRVQGFEAGTDDYIVKP 107

---

>PHOB_PSEAE (P23620) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 29/120 (24%), Positives = 59/120 (49%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD    R++I   L+ + ++               L AE+       A  + V+  
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYEC--------------LEAENTQ----QAHAVIVDRK 47

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +LI+ D+ +PG +G +L +++K      DIP+++++++       + LE GA+++  KP
Sbjct: 48  PDLILLDWMLPGTSGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKP 107

---

>CHEB_CLOAB (Q97GZ3) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 345

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSF--QVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           V+ VDDSVL R+LI  +L+++     + T  +G   L  L +   D          LD+E
Sbjct: 6   VIVVDDSVLMRRLICDMLESNDNIEVIGTAINGQDLLNKLKVMKPDVIT-------LDIE 58

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS--ENIPSRINRCLEEGANEF 355
                      MP M G + LK +K      DIP+++ SS  +        CL  GA +F
Sbjct: 59  -----------MPVMNGIETLKAVKSLKI--DIPIIVFSSISQKGMKYTMECLYLGAFDF 105

Query: 356 FLKPVRLSDMSKLKPHIMK 412
             KP +  ++SK+K  ++K
Sbjct: 106 IPKPEKPFELSKMKDDLIK 124

---

>LUXO1_VIBCH (Q9KT84) Regulatory protein luxO|
          Length = 455

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 30/117 (25%), Positives = 48/117 (41%)
 Frame = +2

Query: 17  VDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVNVNL 196
           V+D+     L    L      +  V +G  A++ +G    D                  L
Sbjct: 2   VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPD------------------L 43

Query: 197 IITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           I+ D  +P MTG D+L  +KE S   D+P+V M++          +  GA +F +KP
Sbjct: 44  ILLDLRLPDMTGMDVLYAVKEKSP--DVPIVFMTAHGSIDTAVEAMRHGAQDFLIKP 98

---

>YCF27_PORAE (P28835) Probable transcriptional regulator ycf27 (OmpR-like|
           protein)
          Length = 240

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L +DD    R+++E  L    + V +   G +AL                        +
Sbjct: 6   ILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKRE------------------H 47

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS-ENIPSRINRCLEEGANEFFLK 364
            NL++ D  MP + GY + +++++ S   D+P++++++  ++  RI   LE GA+++ +K
Sbjct: 48  PNLVVLDLMMPKLDGYGVCQELRKES---DVPIIMLTALSDVSDRITG-LELGADDYIVK 103

Query: 365 P 367
           P
Sbjct: 104 P 104

---

>AFSQ1_STRCO (Q04942) Transcriptional regulatory protein afsQ1|
          Length = 225

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 28/122 (22%), Positives = 58/122 (47%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L ++D    R  +E  L     +V T  SG   L+ L                   E  
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLR------------------EQR 45

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +LI+ D  +PG+ G+++ ++I+ +     +P++++++ N    +   LE GA+++ +KP
Sbjct: 46  PDLIVLDVMLPGIDGFEVCRRIRRTDQ---LPIILLTARNDDIDVVVGLESGADDYVVKP 102

Query: 368 VR 373
           V+
Sbjct: 103 VQ 104

---

>EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3)|
          Length = 1197

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 36/133 (27%), Positives = 59/133 (44%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            +L  DD   +R L++R L    + V     G +AL           +S  H D       
Sbjct: 961  ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALH---------KVSMQHYD------- 1004

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              L+ITD  MP M G++L +K++E +S   +P+  +++    +   + L  G N    KP
Sbjct: 1005 --LLITDVNMPNMDGFELTRKLREQNS--SLPIWGLTANAQANEREKGLSCGMNLCLFKP 1060

Query: 368  VRLSDMSKLKPHI 406
            + L     LK H+
Sbjct: 1061 LTL---DVLKTHL 1070

---

>CHEY_SHIFL (P0AE69) Chemotaxis protein cheY|
          Length = 128

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
 Frame = +2

Query: 11  LAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           L VDD    R+++  LLK   F  V   + G  AL  L                      
Sbjct: 8   LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG------------------ 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              +I+D+ MP M G +LLK I+   +   +PV+++++E     I    + GA+ + +KP
Sbjct: 50  YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109

---

>CHEY_ECOLI (P0AE67) Chemotaxis protein cheY|
          Length = 128

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
 Frame = +2

Query: 11  LAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           L VDD    R+++  LLK   F  V   + G  AL  L                      
Sbjct: 8   LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG------------------ 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              +I+D+ MP M G +LLK I+   +   +PV+++++E     I    + GA+ + +KP
Sbjct: 50  YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109

---

>CHEY_ECO57 (P0AE68) Chemotaxis protein cheY|
          Length = 128

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
 Frame = +2

Query: 11  LAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           L VDD    R+++  LLK   F  V   + G  AL  L                      
Sbjct: 8   LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG------------------ 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              +I+D+ MP M G +LLK I+   +   +PV+++++E     I    + GA+ + +KP
Sbjct: 50  YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109

---

>MAK1_SCHPO (Q9P7Q7) Peroxide stress-activated histidine kinase mak1 (EC|
            2.7.13.3) (Mcs4-associated kinase 1) (His-Asp
            phosphorelay kinase phk3)
          Length = 1639

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
 Frame = +2

Query: 2    FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
            F VL  +D++++ K+I R L+    +      G + ++      E  +  S         
Sbjct: 1506 FSVLLAEDNIINIKVISRYLERIGVKFKVTMDGLQCVE--EWKREKPNFYS--------- 1554

Query: 182  VNVNLIITDYCMPGMTGYDLLKKIKE---SSSFRDIPVVIMSSENIPSRINRCLEEGANE 352
                LI+ D  MP M GY    +I++    + +  +P+V +S+  +P  +  C + G + 
Sbjct: 1555 ----LILMDLQMPVMDGYQACNEIRKYELENDYPKVPIVALSANALPHVVLSCKDSGFDS 1610

Query: 353  FFLKPVRLSDMSKLKPHIMKSRCKEHSHE 439
            +  KP+ L  +S +   I+    +   H+
Sbjct: 1611 YLAKPITLQHLSLIISGILNYTNQSKLHK 1639

---

>CHEY_ECOL6 (Q8FGP6) Chemotaxis protein cheY|
          Length = 128

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
 Frame = +2

Query: 11  LAVDDSVLDRKLIERLLKTSSFQ-VTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           L VDD    R+++  LLK   F  V   + G  AL  L                      
Sbjct: 8   LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGLDALNKLQAGG------------------ 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              +I+D+ MP M G +LLK I+   +   +PV+++++E     I    + GA+ + +KP
Sbjct: 50  YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109

---

>TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC 2.7.13.3) (NHK1|
            protein) (SLN1 homolog)
          Length = 1070

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
 Frame = +2

Query: 11   LAVDDSVLDRKLIERLLKTSS-FQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            L  +D+V++++++ R+L     + VT V  G +A   +  + E+  +             
Sbjct: 936  LVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVKANMEEGKV------------- 982

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             +LI  D  MP + G +  + I++       P+V +S+ +  S I  C+  G + F  KP
Sbjct: 983  FDLIFMDIQMPNLDGIESTRLIRQMGC--SAPIVALSAFSEDSNIKDCMNSGMDMFISKP 1040

Query: 368  VR 373
            +R
Sbjct: 1041 IR 1042

---

>CTRA_CAUCR (Q45994) Cell cycle transcriptional regulator ctrA (Response|
           regulator sokA)
          Length = 231

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL ++D     + IE +LK+  F V T D G + +    ++  D                
Sbjct: 3   VLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYD---------------- 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMS-SENIPSRINRCLEEGANEFFLK 364
             LI+ D  +P M+G D+L+ ++ +    + P++I+S S  I +++ +    GA+++  K
Sbjct: 47  --LILLDLNLPDMSGIDVLRTLRVAKI--NTPIMILSGSSEIDTKV-KTFAGGADDYMTK 101

Query: 365 PVRLSDMSKLKPHIMKSRCKEHS 433
           P    +M   + H +  R K H+
Sbjct: 102 PFHKDEMI-ARIHAVVRRSKGHA 123

---

>NTRC_AZOBR (P45671) Nitrogen assimilation regulatory protein|
          Length = 481

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPV 370
           +LIITD  MP   G DL+ +IK+     D+ +++MS++N      +  E GA E+  KP 
Sbjct: 49  DLIITDVVMPDENGLDLIPRIKKIRP--DLRIIVMSAQNTLITAVKAAERGAFEYLPKPF 106

Query: 371 RLSDMSKLKPHIMKS 415
            L ++  +    + S
Sbjct: 107 DLKELVSVVERALNS 121

---

>ETR1_PRUPE (Q9M7M1) Ethylene receptor (EC 2.7.13.3)|
          Length = 738

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
 Frame = +2

Query: 95  SGTKALQFLGLHAEDASISSVHADQLDVEVNVNLIITDYCMPGMTGYDLLKKIKESSSFR 274
           S TK L  + L  +  ++SS+      +     ++  D CMPG+ GY+L  +I E  + R
Sbjct: 624 SVTKGL-LVHLGCDVTTVSSIDEFLHVISQEHKVVFMDVCMPGIDGYELAVRIHEKFTKR 682

Query: 275 -DIPVVIMSSENIPSRI-NRCLEEGANEFFLKPVRLSDMSKLKPHIMKSR 418
            + PV++  + NI       C+  G +   LKPV +  M  +   +++ R
Sbjct: 683 HERPVLVALTGNIDKMTKENCMRVGMDGVILKPVSVDKMRSVLSELLEHR 732

---

>EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3)|
          Length = 1197

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 35/133 (26%), Positives = 59/133 (44%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            +L  DD   +R L++R L    + V     G +AL           +S  H D       
Sbjct: 961  ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALH---------KVSMQHYD------- 1004

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              L+ITD  MP + G++L +K++E +S   +P+  +++    +   + L  G N    KP
Sbjct: 1005 --LLITDVNMPNVDGFELTRKLREQNS--SLPIWGLTANAQANEREKGLNCGMNLCLFKP 1060

Query: 368  VRLSDMSKLKPHI 406
            + L     LK H+
Sbjct: 1061 LTL---DVLKTHL 1070

---

>HNR_SHIFL (P0AEV3) Protein hnr|
          Length = 337

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 6/153 (3%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L V+D  + R L++    +          G  AL+ LG    D                
Sbjct: 10  ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPD---------------- 53

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             L+I D  MP M G  LL+ I+        PV+++S+    + I + L  G  +  LKP
Sbjct: 54  --LMICDIAMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKP 109

Query: 368 V----RLSDM--SKLKPHIMKSRCKEHSHEDQD 448
           V    RL +M  + L P +  SR +E     +D
Sbjct: 110 VKDLNRLREMVFACLYPSMFNSRVEEEERLFRD 142

---

>HNR_ECOLI (P0AEV1) Protein hnr|
          Length = 337

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 6/153 (3%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L V+D  + R L++    +          G  AL+ LG    D                
Sbjct: 10  ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPD---------------- 53

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             L+I D  MP M G  LL+ I+        PV+++S+    + I + L  G  +  LKP
Sbjct: 54  --LMICDIAMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKP 109

Query: 368 V----RLSDM--SKLKPHIMKSRCKEHSHEDQD 448
           V    RL +M  + L P +  SR +E     +D
Sbjct: 110 VKDLNRLREMVFACLYPSMFNSRVEEEERLFRD 142

---

>HNR_ECO57 (P0AEV2) Protein hnr|
          Length = 337

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 6/153 (3%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L V+D  + R L++    +          G  AL+ LG    D                
Sbjct: 10  ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPD---------------- 53

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             L+I D  MP M G  LL+ I+        PV+++S+    + I + L  G  +  LKP
Sbjct: 54  --LMICDIAMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKP 109

Query: 368 V----RLSDM--SKLKPHIMKSRCKEHSHEDQD 448
           V    RL +M  + L P +  SR +E     +D
Sbjct: 110 VKDLNRLREMVFACLYPSMFNSRVEEEERLFRD 142

---

>PHOB_RHIME (Q52990) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 227

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 21/103 (20%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
 Frame = +2

Query: 125 LHAEDASISSV-HADQLDVEVNV---NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVI 292
           L AE   + ++   D+ ++ +     +L+I D+ +PG++G +L +++++      +P+++
Sbjct: 22  LEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIELCRRLRQRPETERLPIIM 81

Query: 293 MSSENIPSRINRCLEEGANEFFLKPVRLSD-MSKLKPHIMKSR 418
           +++    S   R L  GA+++ +KP    + M+++K  + +++
Sbjct: 82  LTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRAK 124

---

>OMPR_SHIFL (P0AA21) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 30/122 (24%), Positives = 55/122 (45%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           + +L VDD +  R L+ER L    FQV +V                   ++   D+L   
Sbjct: 5   YKILVVDDDMRLRALLERYLTEQGFQVRSV------------------ANAEQMDRLLTR 46

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
            + +L++ D  +PG  G  + ++++  S+   I +V    E +   +   LE GA+++  
Sbjct: 47  ESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVG--LEIGADDYIP 104

Query: 362 KP 367
           KP
Sbjct: 105 KP 106

---

>OMPR_SALTY (P0AA19) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 30/122 (24%), Positives = 55/122 (45%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           + +L VDD +  R L+ER L    FQV +V                   ++   D+L   
Sbjct: 5   YKILVVDDDMRLRALLERYLTEQGFQVRSV------------------ANAEQMDRLLTR 46

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
            + +L++ D  +PG  G  + ++++  S+   I +V    E +   +   LE GA+++  
Sbjct: 47  ESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVG--LEIGADDYIP 104

Query: 362 KP 367
           KP
Sbjct: 105 KP 106

---

>OMPR_SALTI (P0AA20) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 30/122 (24%), Positives = 55/122 (45%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           + +L VDD +  R L+ER L    FQV +V                   ++   D+L   
Sbjct: 5   YKILVVDDDMRLRALLERYLTEQGFQVRSV------------------ANAEQMDRLLTR 46

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
            + +L++ D  +PG  G  + ++++  S+   I +V    E +   +   LE GA+++  
Sbjct: 47  ESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVG--LEIGADDYIP 104

Query: 362 KP 367
           KP
Sbjct: 105 KP 106

---

>OMPR_ECOLI (P0AA16) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 30/122 (24%), Positives = 55/122 (45%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           + +L VDD +  R L+ER L    FQV +V                   ++   D+L   
Sbjct: 5   YKILVVDDDMRLRALLERYLTEQGFQVRSV------------------ANAEQMDRLLTR 46

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
            + +L++ D  +PG  G  + ++++  S+   I +V    E +   +   LE GA+++  
Sbjct: 47  ESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVG--LEIGADDYIP 104

Query: 362 KP 367
           KP
Sbjct: 105 KP 106

---

>OMPR_ECOL6 (P0AA17) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 30/122 (24%), Positives = 55/122 (45%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           + +L VDD +  R L+ER L    FQV +V                   ++   D+L   
Sbjct: 5   YKILVVDDDMRLRALLERYLTEQGFQVRSV------------------ANAEQMDRLLTR 46

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
            + +L++ D  +PG  G  + ++++  S+   I +V    E +   +   LE GA+++  
Sbjct: 47  ESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVG--LEIGADDYIP 104

Query: 362 KP 367
           KP
Sbjct: 105 KP 106

---

>OMPR_ECO57 (P0AA18) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 30/122 (24%), Positives = 55/122 (45%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           + +L VDD +  R L+ER L    FQV +V                   ++   D+L   
Sbjct: 5   YKILVVDDDMRLRALLERYLTEQGFQVRSV------------------ANAEQMDRLLTR 46

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
            + +L++ D  +PG  G  + ++++  S+   I +V    E +   +   LE GA+++  
Sbjct: 47  ESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVG--LEIGADDYIP 104

Query: 362 KP 367
           KP
Sbjct: 105 KP 106

---

>ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR|
          Length = 441

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 37/142 (26%), Positives = 66/142 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD +    +++ LL+   + V   +SG +AL+                 Q+  +V 
Sbjct: 8   ILVVDDDISHCTILQALLRGWGYNVALANSGRQALE-----------------QVREQV- 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +L++ D  M  M G   LK+IK  +    IPV+IM++ +        L+ GA ++ +KP
Sbjct: 50  FDLVLCDVRMAEMDGIATLKEIKALNPA--IPVLIMTAYSSVETAVEALKTGALDYLIKP 107

Query: 368 VRLSDMSKLKPHIMKSRCKEHS 433
           +   D   L+  + K+    HS
Sbjct: 108 L---DFDNLQATLEKALAHTHS 126

---

>ETR1_CUCSA (Q9SSY6) Ethylene receptor (EC 2.7.13.3) (CS-ETR1)|
          Length = 740

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL +DD+ + R + + LL     +VTT  S  + L+          +S  H         
Sbjct: 615 VLVMDDNGVSRSVTKGLLVHLGCEVTTAGSIEEFLRV---------VSQEH--------- 656

Query: 188 VNLIITDYCMPGMTGYDLLKKIKES-SSFRDIP-VVIMSSENIPSRINRCLEEGANEFFL 361
             ++  D C PG+ GY+L  +I+E  +   + P +V+++  +       CL  G +   L
Sbjct: 657 -KVVFMDICTPGVDGYELAIRIREKFAKCHERPFMVVLTGNSDKVTKESCLRAGMDGLIL 715

Query: 362 KPVRLSDMSKLKPHIMKSR 418
           KPV +  M  +   +++ R
Sbjct: 716 KPVSIDKMRSVLSELIERR 734

---

>ETR1_CUCMR (O82436) Ethylene receptor (EC 2.7.13.3) (MEETR1) (Cm-ETR1)|
          Length = 740

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL +DD+ + R + + LL     +VTT  S  + L+          +S  H         
Sbjct: 615 VLVMDDNGVSRSVTKGLLVHLGCEVTTAGSIEEFLRV---------VSQEH--------- 656

Query: 188 VNLIITDYCMPGMTGYDLLKKIKES-SSFRDIP-VVIMSSENIPSRINRCLEEGANEFFL 361
             ++  D C PG+ GY+L  +I+E  +   + P +V+++  +       CL  G +   L
Sbjct: 657 -KVVFMDICTPGVDGYELAIRIREKFAKCHERPFMVVLTGNSDKVTKESCLRAGMDGLIL 715

Query: 362 KPVRLSDMSKLKPHIMKSR 418
           KPV +  M  +   +++ R
Sbjct: 716 KPVSIDKMRSVLSELIERR 734

---

>YCLJ_BACSU (P94413) Hypothetical sensory transduction protein yclJ|
          Length = 227

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 25/93 (26%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
 Frame = +2

Query: 179 EVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFF 358
           E N +LII D  +P M G  + +KI+E+S+   +P++++++++  S      E GA+++ 
Sbjct: 42  EENWDLIILDIMLPSMDGVTICRKIRETST---VPIIMLTAKDTESDQVIGFEMGADDYV 98

Query: 359 LKPVR-LSDMSKLKPHIMKSRCKEHSHEDQDLL 454
            KP   L+ ++++K  I + +    +  D+D++
Sbjct: 99  TKPFSPLTLVARIKAVIRRYKATGKAVIDEDMI 131

---

>CPXR_HAEIN (P44895) Transcriptional regulatory protein cpxR homolog|
          Length = 227

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 1/150 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD +   +L+  LL+   F V T ++G +ALQ L                     +
Sbjct: 4   LLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKL-------------------NES 44

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             L++ D  MP + G + LK+I++ S   ++PV+++++          LE GA++   KP
Sbjct: 45  YKLVLLDVMMPKLNGIETLKEIRKVS---NVPVMMLTARGEDIDRVLGLELGADDCLPKP 101

Query: 368 VRLSDM-SKLKPHIMKSRCKEHSHEDQDLL 454
               ++ +++K  + +S    ++  + ++L
Sbjct: 102 FNDRELIARIKAILRRSASPSNNISNVEIL 131

---

>PRRA_MYCTU (P0A5Z6) Transcriptional regulatory protein prrA|
          Length = 233

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 33/126 (26%), Positives = 58/126 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDD       +ER L+ S F+V T   G +AL+    +  DA               
Sbjct: 10  VLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDA--------------- 54

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              I+ D  MP + G  ++  ++   +  D+PV ++S+ +        LE GA+++ +KP
Sbjct: 55  ---IVLDINMPVLDGVSVVTALRAMDN--DVPVCVLSARSSVDDRVAGLEAGADDYLVKP 109

Query: 368 VRLSDM 385
             L+++
Sbjct: 110 FVLAEL 115

---

>PRRA_MYCBO (P0A5Z7) Transcriptional regulatory protein prrA|
          Length = 233

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 33/126 (26%), Positives = 58/126 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDD       +ER L+ S F+V T   G +AL+    +  DA               
Sbjct: 10  VLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDA--------------- 54

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              I+ D  MP + G  ++  ++   +  D+PV ++S+ +        LE GA+++ +KP
Sbjct: 55  ---IVLDINMPVLDGVSVVTALRAMDN--DVPVCVLSARSSVDDRVAGLEAGADDYLVKP 109

Query: 368 VRLSDM 385
             L+++
Sbjct: 110 FVLAEL 115

---

>CYAB_STIAU (P40138) Adenylate cyclase 2 (EC 4.6.1.1) (ATP pyrophosphate-lyase|
           2) (Adenylyl cyclase 2) (AC2)
          Length = 352

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/78 (26%), Positives = 47/78 (60%)
 Frame = +2

Query: 179 EVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFF 358
           +V   ++++D  MPG+ G +L  ++KES S R +PV+I+++ +  +   + L  GA+++ 
Sbjct: 49  KVQPAIVLSDLDMPGIDGLELCWRLKESPS-RQVPVIILTANDSEAERVKGLRAGADDYV 107

Query: 359 LKPVRLSDMSKLKPHIMK 412
            K   ++++S     +M+
Sbjct: 108 NKSASMAELSARIESVMR 125

---

>GACS_PSESY (P48027) Sensor protein gacS (EC 2.7.13.3)|
          Length = 907

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDD+  +  L++ LL+    +V  V+ G             A++++V  +  D    
Sbjct: 659 VLCVDDNPANLLLVQTLLEDMGAEVVAVEGGY------------AAVNAVQQEAFD---- 702

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRD---IPVVIMSSENIPSRINRCLEEGANEFF 358
             L++ D  MPGM G    + I+   + R+   +P+V +++  + +     L+ G +++ 
Sbjct: 703 --LVLMDVQMPGMDGRQATEAIRAWEAERNQSSLPIVALTAHAMANEKRSLLQSGMDDYL 760

Query: 359 LKPV 370
            KP+
Sbjct: 761 TKPI 764

---

>MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase mak2 (EC|
            2.7.13.3) (Mcs4-associated kinase 2) (His-Asp
            phosphorelay kinase phk1)
          Length = 2310

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
 Frame = +2

Query: 5    HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
            + L  +D+++ RKL+ + L    FQV     G + ++     A+     SV         
Sbjct: 2180 YALIAEDNLIARKLLTKQLSNLGFQVHAAVDGVELVKMY--EAKQFGFYSV--------- 2228

Query: 185  NVNLIITDYCMPGMTGYDLLKKIK----ESSSFRDIPVVIMSSENIPSRINRCLEEGANE 352
                I  DY MP   G + +  I+    E++    IPV+ ++++   S   RCLE G N 
Sbjct: 2229 ----IFADYHMPIRDGAEAVMDIRAYERENNCSTPIPVIALTADIQKSAKQRCLEVGMNF 2284

Query: 353  FFLKP 367
            +  KP
Sbjct: 2285 YLTKP 2289

---

>PRRA_MYCLE (Q50136) Transcriptional regulatory protein prrA|
          Length = 233

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 32/126 (25%), Positives = 58/126 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDD       +ER L+ S F+V+T   G +AL+                     E  
Sbjct: 10  VLVVDDDSDVLASLERGLRLSGFEVSTAIDGAEALRNA------------------TETR 51

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            + I+ D  MP + G  ++  ++   +  D+PV ++S+ +        LE GA+++ +KP
Sbjct: 52  PDAIVLDINMPVLDGVSVVTALRAMDN--DVPVCVLSARSSVDDRVAGLEAGADDYLVKP 109

Query: 368 VRLSDM 385
             L+++
Sbjct: 110 FVLAEL 115

---

>COPR_PSESM (Q02540) Transcriptional activator protein copR|
          Length = 227

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 28/127 (22%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L  +D       +++ L+ + F V  V +GT A+        D +++  +         
Sbjct: 3   LLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAV--------DQALNEAY--------- 45

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS-ENIPSRINRCLEEGANEFFLK 364
            +L+I D  MPG+ G++++++++ +   + +PV+ +++ + +  R+ + LE GA+++ +K
Sbjct: 46  -DLLILDVMMPGLDGWEVIRRLRTAG--QPVPVLFLTARDGVDDRV-KGLELGADDYLVK 101

Query: 365 PVRLSDM 385
           P  LS++
Sbjct: 102 PFALSEL 108

---

>ZRAR_KLEOX (Q9APD9) Transcriptional regulatory protein zraR|
          Length = 443

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 33/130 (25%), Positives = 62/130 (47%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD +    +++ LL+   ++V   ++G +AL+ +                   E  
Sbjct: 8   ILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVR------------------EKV 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +L++ D  M  M G + LK+IK  +    IPV+IM++ +        L+ GA ++ +KP
Sbjct: 50  FDLVLCDIRMAEMDGIETLKEIKTFNP--SIPVLIMTAYSSVDTAVEALKSGALDYLIKP 107

Query: 368 VRLSDMSKLK 397
           +   D  KL+
Sbjct: 108 L---DFDKLQ 114

---

>CHEB_BACSU (Q05522) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 357

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 9/144 (6%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVT---TVDSGTKALQFLGLHAEDASISSVHADQLDV 178
           VL VDDS   RK+I   L T   Q+    T  +G +AL+ + L   D          LDV
Sbjct: 4   VLVVDDSAFMRKMISDFL-TEEKQIEVIGTARNGEEALKKIELLKPDVI-------TLDV 55

Query: 179 EVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSR---INRCLEEGAN 349
           E           MP M G D ++KI E     ++PV+++SS+    +   IN CLE GA 
Sbjct: 56  E-----------MPVMNGTDTVRKIIE---IYNLPVIMVSSQTEKGKECTIN-CLEIGAF 100

Query: 350 EFFLKP---VRLSDMSKLKPHIMK 412
           +F  KP   + L D+ K+K  +++
Sbjct: 101 DFITKPSGSISL-DLYKIKEQLVE 123

---

>SRRA_STAAW (Q7A0U4) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 27/120 (22%), Positives = 56/120 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD    R+L++  L+  SF++    +G +A                   +L +E N
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAY------------------ELAMENN 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              I+ D  +P M G  +  K++E    +  P+++++++   +      E GA+++ +KP
Sbjct: 47  YACILLDLMLPEMDGIQVATKLRE---HKQTPIIMLTAKGEETNRVEGFESGADDYIVKP 103

---

>SRRA_STAAU (Q9L524) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 27/120 (22%), Positives = 56/120 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD    R+L++  L+  SF++    +G +A                   +L +E N
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAY------------------ELAMENN 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              I+ D  +P M G  +  K++E    +  P+++++++   +      E GA+++ +KP
Sbjct: 47  YACILLDLMLPEMDGIQVATKLRE---HKQTPIIMLTAKGEETNRVEGFESGADDYIVKP 103

---

>SRRA_STAAS (Q6G972) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 27/120 (22%), Positives = 56/120 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD    R+L++  L+  SF++    +G +A                   +L +E N
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAY------------------ELAMENN 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              I+ D  +P M G  +  K++E    +  P+++++++   +      E GA+++ +KP
Sbjct: 47  YACILLDLMLPEMDGIQVATKLRE---HKQTPIIMLTAKGEETNRVEGFESGADDYIVKP 103

---

>SRRA_STAAR (Q6GGK6) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 27/120 (22%), Positives = 56/120 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD    R+L++  L+  SF++    +G +A                   +L +E N
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAY------------------ELAMENN 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              I+ D  +P M G  +  K++E    +  P+++++++   +      E GA+++ +KP
Sbjct: 47  YACILLDLMLPEMDGIQVATKLRE---HKQTPIIMLTAKGEETNRVEGFESGADDYIVKP 103

---

>SRRA_STAAN (Q7A5H6) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 27/120 (22%), Positives = 56/120 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD    R+L++  L+  SF++    +G +A                   +L +E N
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAY------------------ELAMENN 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              I+ D  +P M G  +  K++E    +  P+++++++   +      E GA+++ +KP
Sbjct: 47  YACILLDLMLPEMDGIQVATKLRE---HKQTPIIMLTAKGEETNRVEGFESGADDYIVKP 103

---

>SRRA_STAAM (Q7A2R6) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 27/120 (22%), Positives = 56/120 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD    R+L++  L+  SF++    +G +A                   +L +E N
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAY------------------ELAMENN 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              I+ D  +P M G  +  K++E    +  P+++++++   +      E GA+++ +KP
Sbjct: 47  YACILLDLMLPEMDGIQVATKLRE---HKQTPIIMLTAKGEETNRVEGFESGADDYIVKP 103

---

>SRRA_STAAC (Q5HFT0) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 27/120 (22%), Positives = 56/120 (46%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD    R+L++  L+  SF++    +G +A                   +L +E N
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAY------------------ELAMENN 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              I+ D  +P M G  +  K++E    +  P+++++++   +      E GA+++ +KP
Sbjct: 47  YACILLDLMLPEMDGIQVATKLRE---HKQTPIIMLTAKGEETNRVEGFESGADDYIVKP 103

---

>YCF29_CYAPA (P48359) Probable transcriptional regulator ycf29|
          Length = 210

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/89 (22%), Positives = 48/89 (53%)
 Frame = +2

Query: 119 LGLHAEDASISSVHADQLDVEVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMS 298
           +G H E+++      D L  +  ++LII D  MPGM G++ L +++ ++ +  +PV++++
Sbjct: 24  IGFHVEESTCVDQAWDILKRK-KIDLIICDIIMPGMGGFNFLHQLRLNTDYCTLPVILLT 82

Query: 299 SENIPSRINRCLEEGANEFFLKPVRLSDM 385
           +  +        + G + +  KP  + ++
Sbjct: 83  TRGLTQDRIIGYKTGCDSYISKPFNIEEL 111

---

>ETR2_PELHO (Q9XH57) Ethylene receptor 2 (EC 2.7.13.3) (PhETR2)|
          Length = 741

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 2/139 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL +DD+ + R +   LL      VTTV S  + L+                    V  +
Sbjct: 616 VLLLDDNGVSRAVTRGLLAHLGCDVTTVSSSDELLRV-------------------VSQD 656

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFR-DIPVVIMSSENIPS-RINRCLEEGANEFFL 361
             ++  D CMP + G+++  +I E    R + P+++  + NI     + C   G     L
Sbjct: 657 YKVVFMDVCMPEVDGFEIAVRIHEKFMTRHERPLIVALTGNIDQVTKDNCTRVGMEGVVL 716

Query: 362 KPVRLSDMSKLKPHIMKSR 418
           KPV +  M  +  ++++ R
Sbjct: 717 KPVSIDKMRNVLSNLLEHR 735

---

>ETR1_ARATH (P49333) Ethylene receptor (EC 2.7.13.3)|
          Length = 738

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 3/140 (2%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL +D++ + R + + LL     +VTTV S  + L+          +S  H         
Sbjct: 612 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRV---------VSHEH--------- 653

Query: 188 VNLIITDYCMPGMTGYDLLKKIKE--SSSFRDIPVVIMSSENI-PSRINRCLEEGANEFF 358
             ++  D CMPG+  Y +  +I E  +      P+++  S N   S   +C+  G +   
Sbjct: 654 -KVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVL 712

Query: 359 LKPVRLSDMSKLKPHIMKSR 418
           LKPV L ++  +   +++ R
Sbjct: 713 LKPVSLDNIRDVLSDLLEPR 732

---

>CHEY_BACSU (P24072) Chemotaxis protein cheY homolog|
          Length = 119

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTT-VDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +L VDD+   R +I+ +L  + F+V    ++G +A++    H+ D               
Sbjct: 4   ILIVDDAAFMRMMIKDILVKNGFEVVAEAENGAQAVEKYKEHSPD--------------- 48

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
              L+  D  MP M G   LK+IK+  +     +++ S+    S +   ++ GA +F +K
Sbjct: 49  ---LVTMDITMPEMDGITALKEIKQIDA--QARIIMCSAMGQQSMVIDAIQAGAKDFIVK 103

Query: 365 P 367
           P
Sbjct: 104 P 104

---

>ARCA_HAEIN (P44918) Aerobic respiration control protein arcA homolog|
          Length = 236

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 27/145 (18%), Positives = 64/145 (44%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L V+D ++ R  ++ + +   + V   ++G +    L  H                  N
Sbjct: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANH------------------N 47

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           +NL++ D  +PG  G  L ++++E  S   +P++ ++  +        LE GA+++  KP
Sbjct: 48  INLVVMDINLPGKNGLLLARELREELS---LPLIFLTGRDNEVDKILGLEIGADDYLTKP 104

Query: 368 VRLSDMSKLKPHIMKSRCKEHSHED 442
               +++ ++   +  R   H  ++
Sbjct: 105 FNPRELT-IRARNLLHRAMPHQEKE 128

---

>YCF29_PORPU (P51343) Probable transcriptional regulator ycf29|
          Length = 209

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/77 (27%), Positives = 42/77 (54%)
 Frame = +2

Query: 137 DASISSVHADQLDVEVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPS 316
           D +++ + A QL  +   +LII+D  MP + GY+LL+K+++      IPV+ ++++ +  
Sbjct: 30  DIALNGLEAFQLANKYKFDLIISDIIMPIIDGYELLEKLRKIDKLAKIPVIFLTAKGMTK 89

Query: 317 RINRCLEEGANEFFLKP 367
              +    G   +  KP
Sbjct: 90  DRIKGYNMGCYGYLSKP 106

---

>Y2151_LEPIN (P24086) Hypothetical protein LA_2151 (ORF 2)|
          Length = 135

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 33/124 (26%), Positives = 54/124 (43%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           + VL  ++S    K + ++L++  +QV       K L  L                 D  
Sbjct: 12  YQVLIAENSRFQAKQLAQILESEGYQVIGFAENGKELVKL----------------YDEH 55

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
             V+LI  D  +P M GY    +IK       I  VI+S EN P+ +   ++EGA ++  
Sbjct: 56  RLVDLITLDLNLPVMDGYATFFEIKGKGVLPRI--VIVSEENTPAVLKNLIDEGAMDYIP 113

Query: 362 KPVR 373
           KP++
Sbjct: 114 KPIK 117

---

>Y1769_LEPIC (Q72RH6) Hypothetical protein LIC_11769|
          Length = 135

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 33/124 (26%), Positives = 54/124 (43%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           + VL  ++S    K + ++L++  +QV       K L  L                 D  
Sbjct: 12  YQVLIAENSRFQAKQLAQILESEGYQVIGFAENGKELVKL----------------YDEH 55

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
             V+LI  D  +P M GY    +IK       I  VI+S EN P+ +   ++EGA ++  
Sbjct: 56  RLVDLITLDLNLPVMDGYATFFEIKGKGVLPRI--VIVSEENTPAVLKNLIDEGAMDYIP 113

Query: 362 KPVR 373
           KP++
Sbjct: 114 KPIK 117

---

>YPH5_THIVI (P45365) Hypothetical 76.5 kDa protein in phbC 3'region (ORF5)|
          Length = 692

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 30/123 (24%), Positives = 48/123 (39%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           + +L ++      K I  LL T   +   VD   K L  +                    
Sbjct: 138 YRILILEQDASHAKKIASLLATIGMETLVVDDPMKILARMQAFRP--------------- 182

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
              NL++ D  +PG TG +L   I++   F  IP++ +S E    +    L+ G + F  
Sbjct: 183 ---NLVLMDLYLPGATGSELTTIIRDHDDFYGIPILFLSQEADLDKQLAALKAGGDGFIK 239

Query: 362 KPV 370
           KPV
Sbjct: 240 KPV 242

---

>FIXJ_BRAJA (P23221) Transcriptional regulatory protein fixJ|
          Length = 205

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 30/121 (24%), Positives = 50/121 (41%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           H+  +DD    R  +  LL ++ F VT  D     L  L                    +
Sbjct: 6   HIYVIDDDAAMRDSLNFLLDSAGFGVTLFDDAQAFLDALP------------------GL 47

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
           +   +++D  MPG+ G +LLK++K   S    P++IM+           ++ GA +F  K
Sbjct: 48  SFGCVVSDVRMPGLDGIELLKRMKAQQS--PFPILIMTGHGDVPLAVEAMKLGAVDFLEK 105

Query: 365 P 367
           P
Sbjct: 106 P 106

---

>BARA_SHIFL (P59342) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 32/121 (26%), Positives = 55/121 (45%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           V+AVDD+  + KLI  LL+     V   DSG +A++               A Q+  +  
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE--------------RAKQMPFD-- 713

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             LI+ D  MP M G    + I +    R  PV+ +++  +  +  + L  G +++  KP
Sbjct: 714 --LILMDIQMPDMDGIRACELIHQLPHQRQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 368 V 370
           +
Sbjct: 772 I 772

---

>YEDW_ECOLI (P76340) Probable transcriptional regulatory protein yedW|
          Length = 223

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 28/126 (22%), Positives = 60/126 (47%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L ++D+   ++ + + L  + + +  V  G   L +L L  + A               
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGL-YLALKDDYA--------------- 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             LII D  +PGM G+ +L+ ++ +   +  PV+ +++ +      R L+ GAN++ +KP
Sbjct: 47  --LIILDIMLPGMDGWQILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101

Query: 368 VRLSDM 385
              S++
Sbjct: 102 FSFSEL 107

---

>ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR|
          Length = 441

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 35/141 (24%), Positives = 62/141 (43%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD +    +++ LL+   + V   +SG +AL+ +     D                
Sbjct: 8   ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFD---------------- 51

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             L++ D  M  M G   LK+IK  +    IPV+IM++ +        L+ GA ++ +KP
Sbjct: 52  --LVLCDVRMAEMDGIATLKEIKALNPA--IPVLIMTAYSSVETAVEALKTGALDYLIKP 107

Query: 368 VRLSDMSKLKPHIMKSRCKEH 430
           +   D   L+  + K+    H
Sbjct: 108 L---DFDNLQATLEKALAHTH 125

---

>YRKP_BACSU (P54443) Hypothetical sensory transduction protein yrkP|
          Length = 231

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 29/122 (23%), Positives = 56/122 (45%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           + +L V+D      L+E  L  + ++V     G +ALQ +              D LD  
Sbjct: 3   YRILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLVN-------------DSLD-- 47

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
               L+I D  MPG++G +  + I++SS   ++P++ +++ +        L  G +++  
Sbjct: 48  ----LVILDIMMPGISGIETCQHIRKSS---NVPILFLTARSSTLDKTEGLLAGGDDYMT 100

Query: 362 KP 367
           KP
Sbjct: 101 KP 102

---

>HOXA_RALEU (P29267) Hydrogenase transcriptional regulatory protein hoxA|
          Length = 482

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDD    +  + R L    F+V TV S  +A   L                  +   
Sbjct: 8   VLVVDDETRSQDALRRTLD-EEFRVLTVSSADEARALL------------------LRQP 48

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMS----SENIPSRINRCLEEGANEF 355
           V++I+ D  MPG+TG + LK+++E   + +I  +++S    SE+I + +N   E G  ++
Sbjct: 49  VSVILCDQRMPGLTGVEFLKEVRE--RWPEIVRIVISGYTDSEDIIAGVN---EAGIYQY 103

Query: 356 FLKP 367
            LKP
Sbjct: 104 ILKP 107

---

>REGX3_MYCTU (Q11156) Sensory transduction protein regX3|
          Length = 227

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL V+D       +  LL+   F+ T V  G  AL         A      AD       
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAAL---------AEFDRAGAD------- 47

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRC--LEEGANEFFL 361
             +++ D  +PGM+G D+ K+++  SS   +PV+++++ +  S I++   LE GA+++  
Sbjct: 48  --IVLLDLMLPGMSGTDVCKQLRARSS---VPVIMVTARD--SEIDKVVGLELGADDYVT 100

Query: 362 KP 367
           KP
Sbjct: 101 KP 102

---

>REGX3_MYCBO (O07130) Sensory transduction protein regX3|
          Length = 227

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL V+D       +  LL+   F+ T V  G  AL         A      AD       
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAAL---------AEFDRAGAD------- 47

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRC--LEEGANEFFL 361
             +++ D  +PGM+G D+ K+++  SS   +PV+++++ +  S I++   LE GA+++  
Sbjct: 48  --IVLLDLMLPGMSGTDVCKQLRARSS---VPVIMVTARD--SEIDKVVGLELGADDYVT 100

Query: 362 KP 367
           KP
Sbjct: 101 KP 102

---

>SKN7_YEAST (P38889) Transcription factor SKN7 (Peroxide sensitivity protein|
           POS9)
          Length = 622

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 30/139 (21%), Positives = 53/139 (38%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           FHVL V+D  +  +L  + L+     V  V  G  A+  L  +  D              
Sbjct: 377 FHVLLVEDDAVSIQLCSKFLRKYGCTVQVVSDGLSAISTLEKYRYD-------------- 422

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
               L++ D  MP + G      ++  S   + P++ M+   +   +   L+ G N+   
Sbjct: 423 ----LVLMDIVMPNLDGATATSIVR--SFDNETPIIAMTGNIMNQDLITYLQHGMNDILA 476

Query: 362 KPVRLSDMSKLKPHIMKSR 418
           KP    D+  +    +K R
Sbjct: 477 KPFTRDDLHSILIRYLKDR 495

---

>REGX3_MYCSM (Q9F868) Sensory transduction protein regX3|
          Length = 228

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL V+D       +  LL+   F+ T V  G  AL         A      AD       
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSAL---------AEFERSGAD------- 47

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRC--LEEGANEFFL 361
             +++ D  +PGM+G D+ K+++  SS   +PV+++++ +  S I++   LE GA+++  
Sbjct: 48  --IVLLDLMLPGMSGTDVCKQLRARSS---VPVIMVTARD--SEIDKVVGLELGADDYVT 100

Query: 362 KP 367
           KP
Sbjct: 101 KP 102

---

>YFHA_ECOLI (P0AFU4) Hypothetical protein yfhA (ORF-2)|
          Length = 444

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           H+L VDD     KL+   L +  + V T +SG + L+ L     D  IS +  D++D   
Sbjct: 7   HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD--- 63

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSE-NIPSRINRCLEEGANEFFL 361
                       GM  +  ++K++       +PV+I+++  +IP  +    ++G   F  
Sbjct: 64  ------------GMQLFAEIQKVQPG-----MPVIILTAHGSIPDAV-AATQQGVFSFLT 105

Query: 362 KPV 370
           KPV
Sbjct: 106 KPV 108

---

>YFHA_ECO57 (P0AFU5) Hypothetical protein yfhA|
          Length = 444

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           H+L VDD     KL+   L +  + V T +SG + L+ L     D  IS +  D++D   
Sbjct: 7   HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD--- 63

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSE-NIPSRINRCLEEGANEFFL 361
                       GM  +  ++K++       +PV+I+++  +IP  +    ++G   F  
Sbjct: 64  ------------GMQLFAEIQKVQPG-----MPVIILTAHGSIPDAV-AATQQGVFSFLT 105

Query: 362 KPV 370
           KPV
Sbjct: 106 KPV 108

---

>LUXO_VIBPA (Q87MX7) Regulatory protein luxO|
          Length = 453

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           +LI+ D  +P MTG D+L  +K+S    D+P++ M++          +  G+ +F +KP
Sbjct: 42  DLILLDLRLPDMTGMDVLHAVKKSHP--DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKP 98

---

>LUXO_VIBHA (P54299) Luminescence regulatory protein luxO|
          Length = 453

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           +LI+ D  +P MTG D+L  +K+S    D+P++ M++          +  G+ +F +KP
Sbjct: 42  DLILLDLRLPDMTGMDVLHAVKKSHP--DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKP 98

---

>ARCA_SHIFL (P0A9Q4) Aerobic respiration control protein arcA|
          Length = 238

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           H+L V+D ++ R  ++ + +   + V     G +  Q L                   E 
Sbjct: 5   HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS------------------EY 46

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRC--LEEGANEFF 358
           ++NL+I D  +PG  G  L ++++E ++     V +M      + +++   LE GA+++ 
Sbjct: 47  DINLVIMDINLPGKNGLLLARELREQAN-----VALMFLTGRDNEVDKILGLEIGADDYI 101

Query: 359 LKP 367
            KP
Sbjct: 102 TKP 104

---

>ARCA_ECOLI (P0A9Q1) Aerobic respiration control protein arcA (Dye resistance|
           protein)
          Length = 238

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           H+L V+D ++ R  ++ + +   + V     G +  Q L                   E 
Sbjct: 5   HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS------------------EY 46

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRC--LEEGANEFF 358
           ++NL+I D  +PG  G  L ++++E ++     V +M      + +++   LE GA+++ 
Sbjct: 47  DINLVIMDINLPGKNGLLLARELREQAN-----VALMFLTGRDNEVDKILGLEIGADDYI 101

Query: 359 LKP 367
            KP
Sbjct: 102 TKP 104

---

>ARCA_ECOL6 (P0A9Q2) Aerobic respiration control protein arcA|
          Length = 238

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           H+L V+D ++ R  ++ + +   + V     G +  Q L                   E 
Sbjct: 5   HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS------------------EY 46

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRC--LEEGANEFF 358
           ++NL+I D  +PG  G  L ++++E ++     V +M      + +++   LE GA+++ 
Sbjct: 47  DINLVIMDINLPGKNGLLLARELREQAN-----VALMFLTGRDNEVDKILGLEIGADDYI 101

Query: 359 LKP 367
            KP
Sbjct: 102 TKP 104

---

>ARCA_ECO57 (P0A9Q3) Aerobic respiration control protein arcA|
          Length = 238

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           H+L V+D ++ R  ++ + +   + V     G +  Q L                   E 
Sbjct: 5   HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS------------------EY 46

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRC--LEEGANEFF 358
           ++NL+I D  +PG  G  L ++++E ++     V +M      + +++   LE GA+++ 
Sbjct: 47  DINLVIMDINLPGKNGLLLARELREQAN-----VALMFLTGRDNEVDKILGLEIGADDYI 101

Query: 359 LKP 367
            KP
Sbjct: 102 TKP 104

---

>FIMZ_SALTY (P26319) Fimbriae Z protein|
          Length = 210

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLL-KTSSFQVTT-VDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           V+ +D+  + R  IE LL K S+ QV    D    A+++L  +                 
Sbjct: 6   VIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYP---------------- 49

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
             V+L+I D  +PG  G+ LLK+IK  S      ++ +SS++      R +  GAN F  
Sbjct: 50  --VDLVILDIELPGTDGFTLLKRIK--SIQEHTRILFLSSKSEAFYAGRAIRAGANGFVS 105

Query: 362 KPVRLSDM 385
           K   L+D+
Sbjct: 106 KRKDLNDI 113

---

>BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 31/121 (25%), Positives = 55/121 (45%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           V+AVDD+  + KLI  LL+     V   DSG +A++               A Q+  +  
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE--------------RAKQMPFD-- 713

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             LI+ D  MP M G    + I +    +  PV+ +++  +  +  + L  G +++  KP
Sbjct: 714 --LILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 368 V 370
           +
Sbjct: 772 I 772

---

>BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 31/121 (25%), Positives = 55/121 (45%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           V+AVDD+  + KLI  LL+     V   DSG +A++               A Q+  +  
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE--------------RAKQMPFD-- 713

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             LI+ D  MP M G    + I +    +  PV+ +++  +  +  + L  G +++  KP
Sbjct: 714 --LILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 368 V 370
           +
Sbjct: 772 I 772

---

>BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 31/121 (25%), Positives = 55/121 (45%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           V+AVDD+  + KLI  LL+     V   DSG +A++               A Q+  +  
Sbjct: 670 VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE--------------RAKQMPFD-- 713

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             LI+ D  MP M G    + I +    +  PV+ +++  +  +  + L  G +++  KP
Sbjct: 714 --LILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKP 771

Query: 368 V 370
           +
Sbjct: 772 I 772

---

>LUXO_VIBVY (Q7MM78) Regulatory protein luxO|
          Length = 453

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           +LI+ D  +P MTG D+L  +K  +S  D+P++ M++          +  G+ +F +KP
Sbjct: 42  DLILLDLRLPDMTGMDVLHAVK--ASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKP 98

---

>LUXO_VIBVU (Q8CWJ5) Regulatory protein luxO|
          Length = 453

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           +LI+ D  +P MTG D+L  +K  +S  D+P++ M++          +  G+ +F +KP
Sbjct: 42  DLILLDLRLPDMTGMDVLHAVK--ASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKP 98

---

>ETR1_BRAOL (O49230) Ethylene receptor (EC 2.7.13.3)|
          Length = 735

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 2/128 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL +D++ + R + + LL     +VTTV S  + L+          +S  H         
Sbjct: 610 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRV---------VSHEH--------- 651

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFR-DIPVVIMSSENI-PSRINRCLEEGANEFFL 361
             ++  D C PG+  Y +  +I E  + R   P+++  + N   S   +C+  G +   L
Sbjct: 652 -RVVFMDVCTPGVENYQIALRIHEKFTKRHQRPLLVALTGNTDKSTKEKCMSFGLDGVLL 710

Query: 362 KPVRLSDM 385
           KPV L +M
Sbjct: 711 KPVSLDNM 718

---

>SILR_SALTY (Q9ZHD3) Probable transcriptional regulatory protein silR|
          Length = 228

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 23/109 (21%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
 Frame = +2

Query: 77  QVTTVDSGTKALQFLGLHAEDASISSVHADQ------LDVEVNVNLIITDYCMPGMTGYD 238
           ++  V+   K  ++L     +A     HAD       L +    +L+I D  +P + G+D
Sbjct: 2   KILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61

Query: 239 LLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPVRLSDM 385
           +++ ++  S+ + +PV+++++        + LE GA+++ +KP   +++
Sbjct: 62  IIRMLR--SAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAEL 108

---

>NTRC_PROVU (P28787) Nitrogen regulation protein NR(I)|
          Length = 473

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 32/126 (25%), Positives = 58/126 (46%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +V  VDD    R ++ER +          +           HA D  + +++++Q DV  
Sbjct: 5   NVWVVDDDSSIRWVLERAITREGMLCRAFE-----------HANDV-LKALNSEQPDV-- 50

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
               +++D  MP M G  LLK IKE   +  +PV+IM++ +         ++GA ++  K
Sbjct: 51  ----LLSDIRMPDMDGLSLLKIIKE--QYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPK 104

Query: 365 PVRLSD 382
           P  + +
Sbjct: 105 PFDIDE 110

---

>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)|
          Length = 1220

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 28/122 (22%), Positives = 54/122 (44%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            +L V+D+ +++++I+R+L              + ++ + L  +         +      N
Sbjct: 1090 ILVVEDNHVNQEVIKRMLNL------------EGIENIELACDGQEAFDKVKELTSKGEN 1137

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             N+I  D  MP + G    K I+    +   P+V +++    S I  CLE G N F  KP
Sbjct: 1138 YNMIFMDVQMPKVDGLLSTKMIRRDLGYTS-PIVALTAFADDSNIKECLESGMNGFLSKP 1196

Query: 368  VR 373
            ++
Sbjct: 1197 IK 1198

---

>RCAC_FREDI (Q01473) Protein rcaC|
          Length = 651

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 30/122 (24%), Positives = 58/122 (47%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           V+ +DD     + +  LLK   F+VTT+       QF  +      + +V  D L ++VN
Sbjct: 528 VMILDDDQDWLRTLPTLLKPWGFKVTTL---ADPQQFWTV------LQAVTPDALVLDVN 578

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
                    MP + G++L + ++    ++ +PV+ +S    P+  N+    G +++  KP
Sbjct: 579 ---------MPQINGFELCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKP 629

Query: 368 VR 373
           V+
Sbjct: 630 VK 631



 Score = 31.6 bits (70), Expect = 2.1
 Identities = 16/60 (26%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSE-NIPSRINRCLEEGANEFFLKP 367
           +LII D  +P + G  L K+ +       +P+++++++ NI +++   L+ GA+++ +KP
Sbjct: 46  DLIILDIMLPNLDGISLCKRFRAQGY--TVPILLLTAQDNITAKVQG-LDAGADDYVVKP 102

---

>LUXQ_VIBVY (Q7MD16) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)|
            (EC 3.1.3.-)
          Length = 857

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 33/141 (23%), Positives = 58/141 (41%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            VL V+D+  +  +++   +     V  V  GT+AL+ L  HA D                
Sbjct: 736  VLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKLKEHAFD---------------- 779

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              LI+ D  +P M G +  ++I+E+      P+   +++   S     L  GAN   +KP
Sbjct: 780  --LILMDNQLPKMGGIEATREIRETLKL-GTPIYACTADAQESTKQEFLSAGANRVIVKP 836

Query: 368  VRLSDMSKLKPHIMKSRCKEH 430
            ++  ++     H       EH
Sbjct: 837  IKEQELHDELLHFKAHYWVEH 857

---

>LUXQ_VIBVU (Q8D5Z6) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)|
            (EC 3.1.3.-)
          Length = 857

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 33/141 (23%), Positives = 58/141 (41%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            VL V+D+  +  +++   +     V  V  GT+AL+ L  HA D                
Sbjct: 736  VLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKLKEHAFD---------------- 779

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              LI+ D  +P M G +  ++I+E+      P+   +++   S     L  GAN   +KP
Sbjct: 780  --LILMDNQLPKMGGIEATREIRETLKL-GTPIYACTADAQESTKQEFLSAGANRVIVKP 836

Query: 368  VRLSDMSKLKPHIMKSRCKEH 430
            ++  ++     H       EH
Sbjct: 837  IKEQELHDELLHFKAHYWVEH 857

---

>ETR1_MALDO (O81122) Ethylene receptor (EC 2.7.13.3)|
          Length = 741

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 2/139 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL +DD+ + R + + LL      VT V    + L           IS  H         
Sbjct: 616 VLVMDDNGVSRSVTKGLLAHLGCDVTAVSLIDELLHV---------ISQEH--------- 657

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINR--CLEEGANEFFL 361
             ++  D  MPG+ GY+L  +I E  + R    V+++      +I +  C+  G +   L
Sbjct: 658 -KVVFMDVSMPGIDGYELAVRIHEKFTKRHERPVLVALTGSIDKITKENCMRVGVDGVIL 716

Query: 362 KPVRLSDMSKLKPHIMKSR 418
           KPV +  M  +   +++ R
Sbjct: 717 KPVSVDKMRSVLSELLEHR 735

---

>CITT_BACHD (Q9RC52) Transcriptional regulatory protein citT|
          Length = 230

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSF--QVTTVDSGTKALQFLGLHAEDASISSVHADQLD 175
           + VL ++D     ++ E+++    +   ++T  +G +AL +L          S  A  LD
Sbjct: 5   YKVLIIEDDFRVAQIQEQMVNDHPYFHVISTCRTGGEALDYL----------SEKAAALD 54

Query: 176 VEVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEF 355
                 LI+ D  +P + G +LL  I+E   FRD+ ++++++      +   L  G  ++
Sbjct: 55  ------LILLDVYIPDVKGLELLWAIREK--FRDVDIMMVTAAKEVDTVQEALRGGIIDY 106

Query: 356 FLKPVR 373
            LKPV+
Sbjct: 107 LLKPVQ 112

---

>CHEB_DESPS (Q6AJV3) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 364

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGL-HAEDASISSVHADQLDVEV 184
           VL VDD++L RK++  LL+               ++ +G+ H    ++  +   + D   
Sbjct: 6   VLVVDDTILYRKIVSDLLRE-----------IPGIEVIGVAHNGKIALDKIRLSKPD--- 51

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS--ENIPSRIN-RCLEEGANEF 355
              LI  D  MP M G +LL+ +K+     D P  +M S   +  SR+  + LE GA +F
Sbjct: 52  ---LITLDIEMPVMNGIELLEHLKD---IPDAPGAVMLSTLTSDGSRMTMKALELGAFDF 105

Query: 356 FLKP 367
            LKP
Sbjct: 106 ILKP 109

---

>VIRG_AGRT5 (P07545) Regulatory protein virG|
          Length = 253

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVL +DD V  R LI   L   +F+VT V             A+    + V   +     
Sbjct: 15  HVLVIDDDVAMRHLIVEYLTIHAFKVTAV-------------ADSKQFNRVLCSE----- 56

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRIN-RCLEEGANEFFL 361
            V++++ D  +    G ++++ +   S   D+P++I+S   +        LE GA +F  
Sbjct: 57  TVDVVVVDLNLGREDGLEIVRSLATKS---DVPIIIISGARLEEADKVIALELGATDFIA 113

Query: 362 KP 367
           KP
Sbjct: 114 KP 115

---

>VIRG_AGRRH (P13359) Regulatory protein virG|
          Length = 241

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HVL +DD V  R LI   L   +F+VT V    +  + L     D ++           V
Sbjct: 3   HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSKQFNRVLSSETVDVAV-----------V 51

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRIN-RCLEEGANEFFL 361
           ++NL   D       G ++++ +   S   D+P++I+S + +        LE GA +F  
Sbjct: 52  DLNLGRED-------GLEIVRTLATKS---DVPMIIISGDRLEEADKVVALELGATDFIA 101

Query: 362 KP 367
           KP
Sbjct: 102 KP 103

---

>FIMZ_ECOLI (P0AEL8) Fimbriae Z protein|
          Length = 210

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 22/59 (37%), Positives = 34/59 (57%)
 Frame = +2

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
           V+LII D  +PG  G+  LK+IK+  S   + V+ +SS++      R ++ GAN F  K
Sbjct: 50  VDLIIMDIDLPGTDGFTFLKRIKQIQS--TVKVLFLSSKSECFYAGRAIQAGANGFVSK 106

---

>FIMZ_ECO57 (P0AEL9) Fimbriae Z protein|
          Length = 210

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 22/59 (37%), Positives = 34/59 (57%)
 Frame = +2

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
           V+LII D  +PG  G+  LK+IK+  S   + V+ +SS++      R ++ GAN F  K
Sbjct: 50  VDLIIMDIDLPGTDGFTFLKRIKQIQS--TVKVLFLSSKSECFYAGRAIQAGANGFVSK 106

---

>LYTT_OCEIH (Q8EQQ3) Sensory transduction protein lytT|
          Length = 246

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 31/121 (25%), Positives = 53/121 (43%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           H++  +D  L R+ +  LL+  +  +    S     Q L L+ E                
Sbjct: 4   HIMIAEDERLAREELMYLLQQEN-DIILCPSAENGDQLLNLYQE---------------Y 47

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
           N N+I  D  MPG+ G ++ KKI+  + F D  ++I+ +    S   +  E  A ++ LK
Sbjct: 48  NPNVIFLDIHMPGINGIEVAKKIR--NEFEDKDIIIIFTTAYESYGVQAFEIQATDYLLK 105

Query: 365 P 367
           P
Sbjct: 106 P 106

---

>CHEB_NITEU (Q820K0) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 358

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL +DDS L RKL+           T + +    ++ +G     A+   + A ++   +N
Sbjct: 6   VLIIDDSALIRKLL-----------TEIINARPDMEVIG-----AAPDPIVAREMIRTLN 49

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMS--SENIPSRINRCLEEGANEFFL 361
            +++  D  MP M G + L+K+      R +PVV++S  +E       R LE GA +F  
Sbjct: 50  PDVLTLDVEMPKMDGLEFLEKLMR---LRPMPVVMVSTLTERGSEVTFRALELGAVDFVA 106

Query: 362 KP 367
           KP
Sbjct: 107 KP 108

---

>BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            VL VDD   +  L+ + L     +V   DSG  AL     HA D                
Sbjct: 975  VLVVDDHKPNLMLLRQQLDYLGQRVIAADSGEAALALWREHAFD---------------- 1018

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSS------FRDIPVVIMSSENIPSRINRCLEEGAN 349
              ++ITD  MPG++GY+L ++I+ + +       R I     +S  +     RC   G +
Sbjct: 1019 --VVITDCNMPGISGYELARRIRAAEAAPGYGRTRCILFGFTASAQM-DEAQRCRAAGMD 1075

Query: 350  EFFLKPV 370
            +   KP+
Sbjct: 1076 DCLFKPI 1082

---

>BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            VL VDD   +  L+ + L     +V   DSG  AL     HA D                
Sbjct: 975  VLVVDDHKPNLMLLRQQLDYLGQRVVAADSGEAALALWHEHAFD---------------- 1018

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSS------FRDIPVVIMSSENIPSRINRCLEEGAN 349
              ++ITD  MPG+ GY+L ++I+ + +       R I     +S  +     RC   G +
Sbjct: 1019 --VVITDCNMPGINGYELARRIRAAEAAPGYGRTRCILFGFTASAQM-DEAQRCRAAGMD 1075

Query: 350  EFFLKPV 370
            +   KP+
Sbjct: 1076 DCLFKPI 1082

---

>BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            VL VDD   +  L+ + L     +V   DSG  AL     HA D                
Sbjct: 975  VLVVDDHKPNLMLLRQQLDYLGQRVVAADSGEAALALWHEHAFD---------------- 1018

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSS------FRDIPVVIMSSENIPSRINRCLEEGAN 349
              ++ITD  MPG+ GY+L ++I+ + +       R I     +S  +     RC   G +
Sbjct: 1019 --VVITDCNMPGINGYELARRIRAAEAAPGYGRTRCILFGFTASAQM-DEAQRCRAAGMD 1075

Query: 350  EFFLKPV 370
            +   KP+
Sbjct: 1076 DCLFKPI 1082

---

>APRR8_ARATH (O23100) Putative two-component response regulator-like APRR8|
           (Pseudo-response regulator 8)
          Length = 367

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
 Frame = +2

Query: 146 ISSVHADQLDVEVN-----VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENI 310
           +++  AD L + +N     ++L++ ++ +  M  Y+LL+KI+   S  +IPVV+ S  ++
Sbjct: 41  VATTRADDLPLIINNKDKKIDLVLAEFRLIEMNKYELLEKIR---SICEIPVVV-SGAHV 96

Query: 311 PSRINRCLEEGANEFFLKPVRLSDMSKL 394
              I  CL  GA     KP+  +D   L
Sbjct: 97  KDAIVECLCRGAKLCLEKPLMENDFKIL 124

---

>ARR22_ARATH (Q9M8Y4) Two-component response regulator ARR22|
          Length = 142

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 37/134 (27%), Positives = 57/134 (42%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +VL VDD  L+R+L E ++KT      T  +G +A+    LH              D E 
Sbjct: 23  NVLIVDDDPLNRRLHEMIIKTIGGISQTAKNGEEAVI---LHR-------------DGEA 66

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
           + +LI+ D  MP   G    KK++E      I  V   ++    R    +E G N    K
Sbjct: 67  SFDLILMDKEMPERDGVSTTKKLREMKVTSMIVGVTSVADQEEER-KAFMEAGLNHCLEK 125

Query: 365 PVRLSDMSKLKPHI 406
           P+  + +  L  H+
Sbjct: 126 PLTKAKIFPLISHL 139

---

>CHEY_LISMO (P0A4H5) Chemotaxis protein cheY|
          Length = 119

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTT-VDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +L VDD++  R +I+ ++K S F+V    ++G +A++                     EV
Sbjct: 4   LLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYD------------------EV 45

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
             +++  D  MP M G + L +I          V++ S+      +   +++GA +F +K
Sbjct: 46  KPDIVTLDITMPEMDGLEALAQIMAKDP--SAKVIMCSAMGQQGMVVDAIKKGAKDFIVK 103

Query: 365 P 367
           P
Sbjct: 104 P 104

---

>CHEY_LISIN (P0A4H6) Chemotaxis protein cheY|
          Length = 119

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTT-VDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +L VDD++  R +I+ ++K S F+V    ++G +A++                     EV
Sbjct: 4   LLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYD------------------EV 45

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
             +++  D  MP M G + L +I          V++ S+      +   +++GA +F +K
Sbjct: 46  KPDIVTLDITMPEMDGLEALAQIMAKDP--SAKVIMCSAMGQQGMVVDAIKKGAKDFIVK 103

Query: 365 P 367
           P
Sbjct: 104 P 104

---

>PETR_RHOCA (P31079) Protein petR|
          Length = 245

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 28/121 (23%), Positives = 49/121 (40%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           H+L VDD    R L+++ L  + F VT       A +   L                  +
Sbjct: 8   HLLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLFTLSG----------------L 51

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
             NLI+ D  MPG  G  L + ++   +    P++++++          LE GA+++   
Sbjct: 52  EFNLIVLDVMMPGEDGLSLTRDLRTKMA---TPILLLTARGETRERIEGLEAGADDYLFT 108

Query: 365 P 367
           P
Sbjct: 109 P 109

---

>LUXQ_VIBPA (Q87GU5) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)|
            (EC 3.1.3.-)
          Length = 858

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 27/122 (22%), Positives = 53/122 (43%)
 Frame = +2

Query: 8    VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
            VL V+D+  +  +++        QV     G +A++FL  H+ D                
Sbjct: 736  VLLVEDNHTNAFILKAFCTKYKMQVDWAKDGLEAMEFLKDHSYD---------------- 779

Query: 188  VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
              LI+ D  +P + G +  K+I+++      P+   +++      +  +E GAN   LKP
Sbjct: 780  --LILMDNQLPHLGGIETTKEIRQNLKL-GTPIYACTADTAQETSDAFMEAGANYVLLKP 836

Query: 368  VR 373
            ++
Sbjct: 837  IK 838

---

>PILH_PSEAE (P43501) Protein pilH|
          Length = 121

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 24/121 (19%), Positives = 52/121 (42%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDDS  +   +  +L+    QV   ++G   +        D                
Sbjct: 4   ILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPD---------------- 47

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             +++ D  MPG+ G+   +++ + +    IPV+I+++++  +       +GA ++  KP
Sbjct: 48  --VVLMDIVMPGLNGFQATRQLTKDAETSAIPVIIVTTKDQETDKVWGKRQGARDYLTKP 105

Query: 368 V 370
           V
Sbjct: 106 V 106

---

>LUXN_VIBHA (P54301) Autoinducer 1 sensor kinase/phosphatase luxN (EC 2.7.13.3)|
           (EC 3.1.3.-)
          Length = 849

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 27/100 (27%), Positives = 44/100 (44%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDD  + R L++  L          ++G  A++    +                  +
Sbjct: 723 VLIVDDKEVQRALVQMYLNQLGVNSLQANNGENAVEVFKAN------------------H 764

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSEN 307
           V+LI+ D  MP M G+D  ++IKE S     P+V +S E+
Sbjct: 765 VDLILMDVQMPVMNGFDASQRIKELSP--QTPIVALSGES 802

---

>ETR1_PELHO (Q9XH58) Ethylene receptor 1 (EC 2.7.13.3) (PhETR1)|
          Length = 740

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL +D++ + R + + LL      VT+V S  + L+          +S  H         
Sbjct: 616 VLLMDENGISRMVTKGLLMHLGCDVTSVSSSEECLRM---------VSQDH--------- 657

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINR--CLEEGANEFFL 361
             ++  D  +PG+ G++L  +I E    R    +I++  +   ++ +  CL  G     L
Sbjct: 658 -KVVFMDVRVPGLDGHELAVRIHEKFMKRHERPLIVALTSNADKVTKENCLRVGMEGVIL 716

Query: 362 KPVRLSDMSKLKPHIMKSR 418
           KPV +  M  +   +++ R
Sbjct: 717 KPVSVDKMRNVLSKLLEHR 735

---

>FIXJ_AZOCA (P26487) Transcriptional regulatory protein fixJ|
          Length = 211

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 35/121 (28%), Positives = 57/121 (47%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           HV+  DD+V  R+ +  LL++S   VT     T A  FL     DA           V +
Sbjct: 8   HVIDDDDAV--RESLAFLLESSGLAVT---QHTSAAAFL-----DAG----------VPL 47

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
           +   I+TD  MPG++G +LLK++    +   + V++M+           ++ GA +F  K
Sbjct: 48  DRGCIVTDVRMPGISGLELLKELNARGA--HMAVIVMTGHGDVPLAVEAMKLGAADFLEK 105

Query: 365 P 367
           P
Sbjct: 106 P 106

---

>MCS4_SCHPO (P87323) Response regulator mcs4 (Mitotic catastrophe suppressor 4)|
          Length = 522

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 26/155 (16%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +VL V+D+++++K++E  +K  +        G +AL       E     S H        
Sbjct: 363 NVLIVEDNIINQKILETFMKKRNISSEVAKDGLEAL-------EKWKKKSFH-------- 407

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDI------------------------PVVI 292
              LI+ D  +P M+G ++ ++I+       I                        PV+I
Sbjct: 408 ---LILMDIQLPTMSGIEVTQEIRRLERLNAIGVGAPKLTQPIPEKDQLNENKFQSPVII 464

Query: 293 --MSSENIPSRINRCLEEGANEFFLKPVRLSDMSK 391
             +++ ++ +  N  L  G N+F  KPV L  + K
Sbjct: 465 VALTASSLMADRNEALAAGCNDFLTKPVSLVWLEK 499

---

>CUSR_ECOLI (P0ACZ8) Transcriptional regulatory protein cusR|
          Length = 227

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 21/95 (22%), Positives = 53/95 (55%)
 Frame = +2

Query: 101 TKALQFLGLHAEDASISSVHADQLDVEVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDI 280
           TK L   G    D + + ++   L +  + +LII D  +P + G+D+++ ++  S+ + +
Sbjct: 17  TKGLTEAGF-VVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLR--SANKGM 73

Query: 281 PVVIMSSENIPSRINRCLEEGANEFFLKPVRLSDM 385
           P++++++        + LE GA+++ +KP   +++
Sbjct: 74  PILLLTALGTIEHRVKGLELGADDYLVKPFAFAEL 108

---

>CUSR_ECOL6 (P0ACZ9) Transcriptional regulatory protein cusR|
          Length = 227

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 21/95 (22%), Positives = 53/95 (55%)
 Frame = +2

Query: 101 TKALQFLGLHAEDASISSVHADQLDVEVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDI 280
           TK L   G    D + + ++   L +  + +LII D  +P + G+D+++ ++  S+ + +
Sbjct: 17  TKGLTEAGF-VVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLR--SANKGM 73

Query: 281 PVVIMSSENIPSRINRCLEEGANEFFLKPVRLSDM 385
           P++++++        + LE GA+++ +KP   +++
Sbjct: 74  PILLLTALGTIEHRVKGLELGADDYLVKPFAFAEL 108

---

>CUSR_ECO57 (P0AD00) Transcriptional regulatory protein cusR|
          Length = 227

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 21/95 (22%), Positives = 53/95 (55%)
 Frame = +2

Query: 101 TKALQFLGLHAEDASISSVHADQLDVEVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDI 280
           TK L   G    D + + ++   L +  + +LII D  +P + G+D+++ ++  S+ + +
Sbjct: 17  TKGLTEAGF-VVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLR--SANKGM 73

Query: 281 PVVIMSSENIPSRINRCLEEGANEFFLKPVRLSDM 385
           P++++++        + LE GA+++ +KP   +++
Sbjct: 74  PILLLTALGTIEHRVKGLELGADDYLVKPFAFAEL 108

---

>ETR2_LYCES (O49187) Ethylene receptor 2 (EC 2.7.13.3) (LeETR2)|
          Length = 736

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL +DD+   R + + LL      VTT+ SG + L+ L         +  H         
Sbjct: 614 VLVMDDNGFSRMVTKSLLVHLGCDVTTIGSGDECLRIL---------TREH--------- 655

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFR-DIPVVIMSSENIPS-RINRCLEEGANEFFL 361
             ++I D  + GM  YD+   + E    R + P+++  + N        CL  G +   L
Sbjct: 656 -KVLIMDASITGMNCYDVAVSVHEKFGKRLERPLIVALTGNTDQVTKENCLRVGMDGVIL 714

Query: 362 KPVRLSDM 385
           KPV +  M
Sbjct: 715 KPVSIDKM 722

---

>ZRAR_SALTY (P25852) Transcriptional regulatory protein zraR|
          Length = 441

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 35/136 (25%), Positives = 60/136 (44%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD V    +++ LL+   + V    SG  AL            + V     D    
Sbjct: 8   ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDAL------------AQVREKVFD---- 51

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             L++ D  M  M G   LK+IK  +    IP++IM++ +        L+ GA ++ +KP
Sbjct: 52  --LVLCDVRMAEMDGIATLKEIKALNPA--IPILIMTAFSSVETAVEALKAGALDYLIKP 107

Query: 368 VRLSDMSKLKPHIMKS 415
           +   D  +L+  + K+
Sbjct: 108 L---DFDRLQETLEKA 120

---

>ZRAR_SALTI (Q8Z333) Transcriptional regulatory protein zraR|
          Length = 441

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 35/136 (25%), Positives = 60/136 (44%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD V    +++ LL+   + V    SG  AL            + V     D    
Sbjct: 8   ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDAL------------AQVREKVFD---- 51

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
             L++ D  M  M G   LK+IK  +    IP++IM++ +        L+ GA ++ +KP
Sbjct: 52  --LVLCDVRMAEMDGIATLKEIKALNPA--IPILIMTAFSSVETAVEALKAGALDYLIKP 107

Query: 368 VRLSDMSKLKPHIMKS 415
           +   D  +L+  + K+
Sbjct: 108 L---DFDRLQETLEKA 120

---

>QSEB_ECOLI (P52076) Transcriptional regulatory protein qseB|
          Length = 219

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 21/81 (25%), Positives = 43/81 (53%)
 Frame = +2

Query: 197 IITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPVRL 376
           +I D  +PGM G D+L++ +E       PV+I+++ +  +     L  GA+++  KP  L
Sbjct: 48  VILDLTLPGMDGRDILREWREKGQRE--PVLILTARDALAERVEGLRLGADDYLCKPFAL 105

Query: 377 SDMSKLKPHIMKSRCKEHSHE 439
            +++     +M+    + S+E
Sbjct: 106 IEVAARLEALMRRTNGQASNE 126

---

>REGX3_MYCLE (P54884) Sensory transduction protein regX3|
          Length = 198

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 19/61 (31%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRC--LEEGANEFFLK 364
           ++++ D  +PGM+G D+ K+++  SS   +PV+++++ +  S I++   LE GA+++  K
Sbjct: 18  DIVLLDLMLPGMSGTDVYKQLRVRSS---VPVIMVTARD--SEIDKVVGLELGADDYVTK 72

Query: 365 P 367
           P
Sbjct: 73  P 73

---

>VANR_ENTFC (Q06239) Regulatory protein vanR|
          Length = 231

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 26/122 (21%), Positives = 55/122 (45%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           +L VDD      L+E  LK  ++ V    +  +AL+ +                   +  
Sbjct: 5   ILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECID------------------KSE 46

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           ++L I D  +PG +G  + +KI++  ++   P+++++ ++        L  GA+++  KP
Sbjct: 47  IDLAILDIMLPGTSGLTICQKIRDKHTY---PIIMLTGKDTEVDKITGLTIGADDYITKP 103

Query: 368 VR 373
            R
Sbjct: 104 FR 105

---

>QSEB_ECO57 (Q8XBS3) Transcriptional regulatory protein qseB|
          Length = 219

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 21/81 (25%), Positives = 42/81 (51%)
 Frame = +2

Query: 197 IITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPVRL 376
           +I D  +PGM G D+L++ +E       PV+I+++ +        L  GA+++  KP  L
Sbjct: 48  VILDLTLPGMDGRDILREWREKGQRE--PVLILTARDALEERVEGLRLGADDYLCKPFAL 105

Query: 377 SDMSKLKPHIMKSRCKEHSHE 439
            +++     +M+    + S+E
Sbjct: 106 IEVAARLEALMRRTNGQASNE 126

---

>ETR1_TOBAC (O48929) Ethylene receptor (EC 2.7.13.3) (NT-ETR1)|
          Length = 738

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL +DD+   R + + LL      VTTV SG + L+ L         +  H         
Sbjct: 614 VLIMDDNGFSRMVTKGLLVHLGCDVTTVSSGDECLRVL---------TQEH--------- 655

Query: 188 VNLIITDYCMPGMTGYDLLKKIKES-SSFRDIPVVIMSSENIPSRINR--CLEEGANEFF 358
             ++  D  +PG+  Y++  +I E      + P+++  + N   R+ +  C+  G +   
Sbjct: 656 -KVVFMDVSIPGIDCYEVAVQIHEKFGKHHNRPLIVALTGN-TDRVTKENCMRVGMDGVI 713

Query: 359 LKPVRLSDMSKLKPHIMK 412
           LKPV +  M  +   +++
Sbjct: 714 LKPVSVDKMRSVLSELLE 731

---

>QSEB_SALTY (P66795) Transcriptional regulatory protein qseB|
          Length = 219

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 18/64 (28%), Positives = 37/64 (57%)
 Frame = +2

Query: 197 IITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPVRL 376
           +I D  +PGM G D+L++ +E    +  PV+I+++ +  +     L  GA+++  KP  L
Sbjct: 48  VILDLTLPGMDGRDILREWREKG--KQEPVLILTARDALAERVEGLRLGADDYLCKPFAL 105

Query: 377 SDMS 388
            +++
Sbjct: 106 IEVA 109

---

>QSEB_SALTI (P66796) Transcriptional regulatory protein qseB|
          Length = 219

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 18/64 (28%), Positives = 37/64 (57%)
 Frame = +2

Query: 197 IITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPVRL 376
           +I D  +PGM G D+L++ +E    +  PV+I+++ +  +     L  GA+++  KP  L
Sbjct: 48  VILDLTLPGMDGRDILREWREKG--KQEPVLILTARDALAERVEGLRLGADDYLCKPFAL 105

Query: 377 SDMS 388
            +++
Sbjct: 106 IEVA 109

---

>PGTA_SALTY (P06184) Phosphoglycerate transport system transcriptional|
           regulatory protein pgtA
          Length = 415

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 16/60 (26%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +2

Query: 194 LIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSE-NIPSRINRCLEEGANEFFLKPV 370
           ++++D CMPG +G DL+    +      +P+++++   ++P  ++  +++GA +F  KPV
Sbjct: 52  IVLSDVCMPGCSGIDLMTLFHQDDD--QLPILLITGHGDVPMAVD-AVKKGAWDFLQKPV 108

---

>CHEB_BDEBA (P62635) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 354

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 34/120 (28%), Positives = 54/120 (45%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           VL VDDS + RKL+E++            S    ++ +G     AS   +  D+L V + 
Sbjct: 7   VLIVDDSAVIRKLLEKIF-----------SSCADIEVVG----TASDPYIARDKL-VALK 50

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
            +++  D  MP M G   L+K+ +    R I    ++     + + R LE GA E   KP
Sbjct: 51  PDVMTLDVEMPRMDGISFLEKVMQHFPTRTIIFSSLAKTGSETYL-RALEAGAIEIMEKP 109

---

>RSSB_SERMA (Q8GP20) Swarming motility regulation protein rssB|
          Length = 219

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 18/65 (27%), Positives = 37/65 (56%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPV 370
           +L++ D  +P   G  L K I   ++ ++IP++I+++ +    +   L+ GAN+F  KP 
Sbjct: 46  DLMLLDLTLPDGDG--LQKLIAWRAAGQNIPIIILTARDRIESLVNSLDSGANDFLAKPF 103

Query: 371 RLSDM 385
            L ++
Sbjct: 104 ALPEL 108

---

>PCOR_ECOLI (Q47456) Transcriptional regulatory protein pcoR|
          Length = 226

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 17/66 (25%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS-ENIPSRINRCLEEGANEFFLKP 367
           +LII D  +P + G+ ++  ++ES    + PV+ +++ +N+  ++ + LE GA+++ +KP
Sbjct: 47  DLIILDVMLPFLDGWQIISALRESG--HEEPVLFLTAKDNVRDKV-KGLELGADDYLIKP 103

Query: 368 VRLSDM 385
              +++
Sbjct: 104 FDFTEL 109

---

>ANP_NOTCO (P24856) Ice-structuring glycoprotein precursor (ISGP) (Antifreeze|
           glycopeptide polyprotein) (AFGP polyprotein) [Contains:
           AFGP7 (AFGP 7); AFGP8 (AFGP 8); AFGP8-like] (Fragment)
          Length = 790

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRI------TAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           +P  A TP +        AA P+TA + +   AA P+ A TP +  A  AAT
Sbjct: 657 TPATAATPALIFAATAATAATPATAALNFAATAATPATAATPALIFAATAAT 708



 Score = 33.9 bits (76), Expect = 0.42
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRI------TAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           +P  A TP +        AA P+TA + +   AA P+ A TP +  A  AAT
Sbjct: 538 TPATAATPALIFAATAATAATPATAALNFAATAATPATAATPALIFAATAAT 589



 Score = 33.9 bits (76), Expect = 0.42
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRI------TAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           +P  A TP +        AA P+TA + +   AA P+ A TP +  A  AAT
Sbjct: 402 TPATAATPALIFAATAATAATPATAALNFAATAATPATAATPALIFAATAAT 453



 Score = 33.9 bits (76), Expect = 0.42
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRI------TAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           +P  A TP +        AA P+TA + +   AA P+ A TP +  A  AAT
Sbjct: 317 TPATAATPALIFAATAATAATPATAALNFAATAATPATAATPALIFAATAAT 368



 Score = 33.9 bits (76), Expect = 0.42
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRI------TAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           +P  A TP +        AA P+TA + +   AA P+ A TP +  A  AAT
Sbjct: 283 TPATAATPALIFAATAATAATPATAALNFAATAATPATAATPALIFAATAAT 334



 Score = 33.9 bits (76), Expect = 0.42
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRI------TAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           +P  A TP +        AA P+TA + +   AA P+ A TP +  A  AAT
Sbjct: 164 TPATAATPALIFAATAATAATPATAALNFAATAATPATAATPALIFAATAAT 215



 Score = 33.9 bits (76), Expect = 0.42
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRI------TAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           +P  A TP +        AA P+TA + +   AA P+ A TP +  A  AAT
Sbjct: 62  TPATAATPALIFAAAAATAATPATAALNFAATAATPATAATPALIFAATAAT 113



 Score = 32.7 bits (73), Expect = 0.93
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRI------TAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           +P  A TP +        AA P+TA   +   AA P+ A TP +  A  AAT
Sbjct: 249 TPATAATPALIFAATAATAATPATAACNFAATAATPATAATPALIFAATAAT 300



 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRITAAAIPSTAVIP------WITAAAIPSAAVTPRITAAVIAAT 641
           +P  A TP +  AA  +TA  P      +   AA P+ A TP +  A  AAT
Sbjct: 572 TPATAATPALIFAATAATAATPATPAFHFAATAATPATAATPALIFAATAAT 623



 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRITAAAIPSTAVIP------WITAAAIPSAAVTPRITAAVIAAT 641
           +P  A TP +  AA  +TA  P      +   AA P+ A TP +  A  AAT
Sbjct: 130 TPATAATPALIFAATAATAATPATPAFHFAATAATPATAATPALIFAATAAT 181



 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRITAAAIPSTAVIP------WITAAAIPSAAVTPRITAAVIAAT 641
           +P  A TP +  AA  +TA  P      +   AA P+ A TP +  A  AAT
Sbjct: 96  TPATAATPALIFAATAATAATPATPAFHFAATAATPATAATPALIFAATAAT 147



 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +3

Query: 504 SPLAAVTPRI------TAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           +P    TP +        AA P+TA + +   AA P+ A TP +  A  AAT
Sbjct: 28  TPATPATPALIFAATAATAATPATAALNFAATAATPATAATPALIFAAAAAT 79



 Score = 31.2 bits (69), Expect = 2.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 540 AAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           AA P+TA + +   AA P+ A TP +  A  AAT
Sbjct: 641 AATPATAALNFAATAATPATAATPALIFAATAAT 674



 Score = 31.2 bits (69), Expect = 2.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 540 AAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           AA P+TA + +   AA P+ A TP +  A  AAT
Sbjct: 522 AATPATAALNFAATAATPATAATPALIFAATAAT 555



 Score = 31.2 bits (69), Expect = 2.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 540 AAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           AA P+TA + +   AA P+ A TP +  A  AAT
Sbjct: 471 AATPATAALNFAATAATPATAATPALIFAATAAT 504



 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 513 AAVTPRITAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           AA       AA P+TA + +   AA P+   TP +  A  AAT
Sbjct: 3   AAPAATAATAATPATAALNFAATAATPATPATPALIFAATAAT 45



 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 540 AAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           AA P+TA   +   AA P+ A TP +  A  AAT
Sbjct: 233 AATPATAACNFAATAATPATAATPALIFAATAAT 266



 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 504 SPLAAVTPRITAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           +P  A       AA P+TA  P +  AA  + A TP   A   AAT
Sbjct: 235 TPATAACNFAATAATPATAATPALIFAATAATAATPATAACNFAAT 280

---

>MASZ_COREF (Q8FNB3) Malate synthase G (EC 2.3.3.9)|
          Length = 748

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -2

Query: 289 HNRDVPERRRLLDLLEQIVSCHPRHAVVSDDEVHVHLDVQLVRMDRGNGG---VLGMEPQ 119
           H+ D+ E R  L +  QI++   RH VV++++V   L+   V +D  N G    L M P 
Sbjct: 646 HDIDLMEDRATLRISSQILANWLRHGVVTEEQVIESLERMAVVVDEQNAGDPNYLNMAPN 705

Query: 118 ELESL 104
             ES+
Sbjct: 706 FTESV 710

---

>ARCB_SHIFL (P0AEC4) Aerobic respiration control sensor protein arcB (EC|
           2.7.13.3)
          Length = 778

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 14/68 (20%), Positives = 35/68 (51%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPV 370
           +L++ D  +P MTG D+ +++ +     D+P ++  + N+       L  G ++   KP+
Sbjct: 571 DLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGMDDVLSKPL 630

Query: 371 RLSDMSKL 394
            +  ++ +
Sbjct: 631 SVPALTAM 638

---

>ARCB_ECOLI (P0AEC3) Aerobic respiration control sensor protein arcB (EC|
           2.7.13.3)
          Length = 778

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 14/68 (20%), Positives = 35/68 (51%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPV 370
           +L++ D  +P MTG D+ +++ +     D+P ++  + N+       L  G ++   KP+
Sbjct: 571 DLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGMDDVLSKPL 630

Query: 371 RLSDMSKL 394
            +  ++ +
Sbjct: 631 SVPALTAM 638

---

>ARCB_ECO57 (P58363) Aerobic respiration control sensor protein arcB (EC|
           2.7.13.3)
          Length = 778

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 14/68 (20%), Positives = 35/68 (51%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPV 370
           +L++ D  +P MTG D+ +++ +     D+P ++  + N+       L  G ++   KP+
Sbjct: 571 DLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGMDDVLSKPL 630

Query: 371 RLSDMSKL 394
            +  ++ +
Sbjct: 631 SVPALTAM 638

---

>IRLR_BURPS (O31395) Transcriptional activator protein irlR|
          Length = 229

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 17/59 (28%), Positives = 36/59 (61%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKP 367
           +LII D  +PG  G+ +L++++ + S    PV+ +++ +      + LE GA+++ +KP
Sbjct: 46  DLIILDVMLPGHDGWTVLERLRRAHS---TPVLFLTARDDVGDRVKGLELGADDYVVKP 101

---

>SSK1_YEAST (Q07084) Osomolarity two-component system protein SSK1|
          Length = 712

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 26/155 (16%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEV 184
           +VL V+D+V+++ ++   L+          +G +A+                      E 
Sbjct: 505 NVLIVEDNVINQAILGSFLRKHKISYKLAKNGQEAVNIWK------------------EG 546

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKE------------------------SSSFRDIPVVI 292
            ++LI  D  +P ++G +  K+I++                        S  F   PV+I
Sbjct: 547 GLHLIFMDLQLPVLSGIEAAKQIRDFEKQNGIGIQKSLNNSHSNLEKGTSKRFSQAPVII 606

Query: 293 --MSSENIPSRINRCLEEGANEFFLKPVRLSDMSK 391
             +++ N      + L  G N++  KPV L  +SK
Sbjct: 607 VALTASNSQMDKRKALLSGCNDYLTKPVNLHWLSK 641

---

>ISP3_SCHPO (P40899) Sexual differentiation process protein isp3 (Meiotic|
           expression up-regulated protein 4)
          Length = 182

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 501 PSPLAAVTPRI-TAAAIPSTAVIPWITAAAIPSAAVTPRITAA 626
           P PL  +TP +  AAA P+ A  P     A P+AA TP   AA
Sbjct: 145 PDPLTGITPAVAAAAATPAAAATP-----ATPAAAATPAAPAA 182

---

>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)|
          Length = 926

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/46 (45%), Positives = 24/46 (52%)
 Frame = +3

Query: 504 SPLAAVTPRITAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           SP AAV     A+  P+T      TA A  +AA T  ITAA  AAT
Sbjct: 765 SPAAAVQIPAAASLTPATVSPTAATATAAVAAATTAAITAAAAAAT 810

---

>DCTD_RHILE (P10046) C4-dicarboxylate transport transcriptional regulatory|
           protein dctD
          Length = 448

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
 Frame = +2

Query: 8   VLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVEVN 187
           V  +DD    R+   + L+ + F V+  D G KA           +++ + AD       
Sbjct: 7   VALIDDDKDLRRATAQTLELAGFSVSAYD-GAKA-----------ALADLPADF------ 48

Query: 188 VNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSE-NIPSRINRCLEEGANEFFLK 364
              ++TD  MP + G  L   ++      D+PV++M+   +IP  + + +++GA +F  K
Sbjct: 49  AGPVVTDIRMPEIDGLQLFATLQGMDV--DLPVILMTGHGDIPMAV-QAIQDGAYDFIAK 105

Query: 365 P 367
           P
Sbjct: 106 P 106

---

>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)|
           (Trio-associated repeat on actin)
          Length = 2365

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -1

Query: 227 SSQACSSQ***GSRSPRRPAGPHGQRKWRRPRHGAP-RTGE--PWSQNP 90
           SSQ C+       +   RP+ PH   +W  PR+ +P RT +  PW+  P
Sbjct: 868 SSQCCTQ------KENLRPSSPHRSTQWNNPRNSSPHRTNKDIPWASFP 910

---

>BASR_ECOLI (P30843) Transcriptional regulatory protein basR/pmrA|
          Length = 222

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 25/109 (22%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
 Frame = +2

Query: 77  QVTTVDSGTKALQFLGLHAE------DASISSVHADQLDVEVNVNLIITDYCMPGMTGYD 238
           ++  V+  T  LQ L L A+      D+  ++  A+Q     + +L++ D  +P   G  
Sbjct: 2   KILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGLH 61

Query: 239 LLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPVRLSDM 385
            L +I++      +PV+I+++ +  +     L+ GA+++ +KP  L ++
Sbjct: 62  FLARIRQKKY--TLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEEL 108

---

>SP0A_BACME (P52932) Stage 0 sporulation protein A (Fragment)|
          Length = 212

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +2

Query: 185 NVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLK 364
           N ++++ D  MP + G  +L ++KE        V+++++        + ++ GA  F LK
Sbjct: 49  NPDVLVLDIIMPHLDGLAVLGQLKEMKKENYPNVIMLTAFGQEDVTKKAVDLGAAYFILK 108

Query: 365 PVRLSDMSKLKPHI 406
           P    DM  L  HI
Sbjct: 109 PF---DMENLVNHI 119

---

>BASR_SALTY (P36556) Transcriptional regulatory protein basR/pmrA|
          Length = 222

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 25/109 (22%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
 Frame = +2

Query: 77  QVTTVDSGTKALQFLGLHAEDAS-----ISSVHADQLDVEV-NVNLIITDYCMPGMTGYD 238
           ++  V+  T  LQ L L A+        +S+  A +  +E  + +L++ D  +P   G  
Sbjct: 2   KILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGLH 61

Query: 239 LLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFLKPVRLSDM 385
            L +I++      +PV+I+++ +  +     L+ GA+++ +KP  L ++
Sbjct: 62  FLTRIRQKKY--TLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEEL 108

---

>FIXJ_RHIME (P10958) Transcriptional regulatory protein fixJ|
          Length = 204

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 28/122 (22%), Positives = 49/122 (40%)
 Frame = +2

Query: 2   FHVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHAEDASISSVHADQLDVE 181
           + V  VDD    RK +  +L  + F V    S    L F                    +
Sbjct: 4   YTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP------------------D 45

Query: 182 VNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENIPSRINRCLEEGANEFFL 361
           V   +++TD  MP M+G +LL+ + +     +IP ++++           ++ GA +F  
Sbjct: 46  VRNGVLVTDLRMPDMSGVELLRNLGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIE 103

Query: 362 KP 367
           KP
Sbjct: 104 KP 105

---

>UVRY_ECOL6 (P66797) Response regulator uvrY|
          Length = 218

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHA--EDASISSVHADQLDV 178
           +VL VDD  L R  I R+L+             K ++ +G  +  EDA +    A+ +DV
Sbjct: 3   NVLLVDDHELVRAGIRRILED-----------IKGIKVVGEASCGEDA-VKWCRANAVDV 50

Query: 179 EVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSEN-IPSRINRCLEEGANEF 355
                 ++ D  MPG+ G +  +KI  S++   I ++ + +EN +P+++   ++ GA  +
Sbjct: 51  ------VLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKV---MQAGAAGY 101

Query: 356 FLK 364
             K
Sbjct: 102 LSK 104

---

>UVRY_ECO57 (P66798) Response regulator uvrY|
          Length = 218

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
 Frame = +2

Query: 5   HVLAVDDSVLDRKLIERLLKTSSFQVTTVDSGTKALQFLGLHA--EDASISSVHADQLDV 178
           +VL VDD  L R  I R+L+             K ++ +G  +  EDA +    A+ +DV
Sbjct: 3   NVLLVDDHELVRAGIRRILED-----------IKGIKVVGEASCGEDA-VKWCRANAVDV 50

Query: 179 EVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSEN-IPSRINRCLEEGANEF 355
                 ++ D  MPG+ G +  +KI  S++   I ++ + +EN +P+++   ++ GA  +
Sbjct: 51  ------VLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKV---MQAGAAGY 101

Query: 356 FLK 364
             K
Sbjct: 102 LSK 104

---

>CYTX_ONCVO (P22085) Onchocystatin precursor (Cysteine proteinase inhibitor|
           OV7)
          Length = 162

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
 Frame = +2

Query: 302 ENIPSRINRCLEEGANEFFLKPVRLSDMS---------KLKPHIMKSRCKEHSHEDQDL 451
           E +PS + +  E+  +E+ L P++L  +S         K+   + +S+CK+ S+E  DL
Sbjct: 67  ELLPSILMKVNEQSNDEYHLMPIKLLKVSSQVVAGVKYKMDVQVARSQCKKSSNEKVDL 125

---

>CPN_DROME (Q02910) Calphotin|
          Length = 864

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 498 IPSPLAAVTPRITAAAIPSTA--VIPWITAAAIPSAAVTPRITAAVIAAT 641
           I  P+ A TP + + A+  T   V+P + A +IP+  V      A +A T
Sbjct: 330 IAPPVVAETPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVT 379



 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 507 PLAAVTPRITAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIA 635
           PLAA  P + A     T V+    AAA P  +V P +  AV+A
Sbjct: 238 PLAAAEPVVVAPPATETPVVA--PAAASPHVSVAPAVETAVVA 278

---

>RBL2_RAT (O55081) Retinoblastoma-like protein 2 (130 kDa|
           retinoblastoma-associated protein) (PRB2) (P130) (RBR-2)
           (PPAR-alpha-interacting complex protein 128) (PRIC128)
          Length = 1135

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 314 SRINRCLEEGANEFFLKPVRLSDMSKLKPH 403
           +RI RC E+   EFF K  +  DM+ L PH
Sbjct: 112 TRILRCSEQSLIEFFNKMKKWEDMANLPPH 141

---

>RBL2_MOUSE (Q64700) Retinoblastoma-like protein 2 (130 kDa|
           retinoblastoma-associated protein) (PRB2) (P130) (RBR-2)
          Length = 1135

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 314 SRINRCLEEGANEFFLKPVRLSDMSKLKPH 403
           +RI RC E+   EFF K  +  DM+ L PH
Sbjct: 112 TRILRCSEQSLIEFFNKMKKWEDMANLPPH 141

---

>ROL6_CAEEL (P20784) Cuticle collagen rol-6 (Protein roller-6)|
          Length = 348

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 94  FWDQGSPVLGAPCRGRLHFLCPCGPAGRRGEREPHHH 204
           F + G P  G  C+  +   CP GPAG  GE  P  H
Sbjct: 129 FPNGGGPRGGNQCQCTVENSCPPGPAGPEGEEGPDGH 165

---

>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor|
          Length = 261

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -1

Query: 182 PRRPAGPHGQRKWRRPRHGAPRTGEPWSQNPQ 87
           PR P GP       RP  G P TG P  Q PQ
Sbjct: 172 PRPPQGPPTTGPQPRPTQGPPPTGGPQQQPPQ 203

---

>FABH_PORPU (P51196) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 326

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 375 SRTGFRKNSFAPSSRHLLILEGMFSDDMITTGMSLKDDDSLIFLSRSYP 229
           +RTG +K   APSS  L  L    ++D ++      +D  LI L+ S P
Sbjct: 35  TRTGIKKRHLAPSSTSLTKLAAEAANDALSKASINAEDIDLIILATSTP 83

---

>ANPY_PSEAM (P23699) Ice-structuring protein precursor (ISP) (Antifreeze|
           protein) (AFP)
          Length = 91

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 637 AAITAAVIRGVTAADGIAAAVIHGITAVDGIAAAVIRGVTAANG 506
           AA TAA      AA  + AA    +TA +  AAA      AA G
Sbjct: 48  AAATAATAAAAAAATAVTAAKAAALTAANAAAAAAATAAAAARG 91

---

>MANB_CALSA (P22533) Beta-mannanase/endoglucanase A precursor [Includes: Mannan|
           endo-1,4-beta-mannosidase A (EC 3.2.1.78)
           (Beta-mannanase) (Endo-1,4-mannanase);
           Endo-1,4-beta-glucanase (EC 3.2.1.4) (Cellulase)]
          Length = 1331

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +3

Query: 501 PSPLAAVTPRITAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
           P+P    TP  T    P+  V P  T  A P+   TP  T     AT
Sbjct: 520 PAPAPTATPTPTPTVTPTPTVTPTPTVTATPTPTPTPTPTPVSTPAT 566

---

>CREB3_MOUSE (Q61817) Cyclic AMP-responsive element-binding protein 3|
           (Transcription factor LZIP)
          Length = 404

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
 Frame = -2

Query: 367 WFQEELICSFLQASVN------SGRYVLR*HDHNRDVPERRRLLDLLE-QIVSCHPR 218
           W  E+L+ S L  SV+      S   +L  HDHN  +P+    +DL E +++SC  R
Sbjct: 58  WEVEDLLSSLLSPSVSRDVLGSSSSSIL--HDHNYSLPQEHVSIDLGECEMISCRGR 112

---

>Y4XI_RHISN (P55701) Probable transcriptional regulatory protein y4xI|
          Length = 226

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 194 LIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSS-ENIPSRINRCLEEGANEFFLKPV 370
           +++ +  +P   G D L++++  S    +P VIMS  +++  RI+     GA++F  KPV
Sbjct: 45  ILLLELVLPDGDGLDWLRQLR--SDGYSVPAVIMSRLDDLEKRIS-VFNSGADDFLRKPV 101

Query: 371 RLSDM 385
              ++
Sbjct: 102 STDEL 106

---

>MASZ_CORGL (P42450) Malate synthase G (EC 2.3.3.9)|
          Length = 738

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -2

Query: 289 HNRDVPERRRLLDLLEQIVSCHPRHAVVSDDEVHVHLDVQLVRMDRGNGG 140
           H+ D+ E R  L +  Q+++   RH VVS ++V   L+   V +D+ N G
Sbjct: 639 HDIDLMEDRATLRISSQMLANWIRHDVVSKEQVLESLERMAVVVDKQNAG 688

---

>PATA_ANASP (P39048) Protein patA (PAT-1)|
          Length = 379

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 10/38 (26%), Positives = 26/38 (68%)
 Frame = +2

Query: 191 NLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSE 304
           ++I+ +  MP + GY+L   +++ S F++ PV++++ +
Sbjct: 306 DIILINVDMPDLDGYELCSLLRKHSYFKNTPVIMVTEK 343

---

>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)|
            (E3 ubiquitin protein ligase URE-B1) (E3Histone)
          Length = 4377

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +3

Query: 501  PSPLAAVTPRITAAAIPSTAVIPWITAAAIPSAAVTPRITAAVIAAT 641
            P+P AA TP  +A A+ +   I  IT AA  S  VT   TA    +T
Sbjct: 3505 PTPPAATTPVTSAPALVAATAISTITVAA--STTVTTPTTATTTVST 3549

---

>GLNL_BACSU (P40759) Sensory transduction protein glnL|
          Length = 314

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/101 (20%), Positives = 44/101 (43%)
 Frame = +2

Query: 131 AEDASISSVHADQLDVEVNVNLIITDYCMPGMTGYDLLKKIKESSSFRDIPVVIMSSENI 310
           A+D S    H  Q      +++++ D  MPG  G + +++I+ + S +   +V++S    
Sbjct: 32  ADDGSQVEGHMLQFK---QIDILLIDLLMPGRDGIETIRQIQNTYSGK---IVMISQVEA 85

Query: 311 PSRINRCLEEGANEFFLKPVRLSDMSKLKPHIMKSRCKEHS 433
              +      G   F  KP+   ++  +   + +    EHS
Sbjct: 86  KEMVGEAYSLGIEYFIHKPINRIEIVTVLQKVKERIELEHS 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,258,341
Number of Sequences: 219361
Number of extensions: 1773001
Number of successful extensions: 7078
Number of sequences better than 10.0: 239
Number of HSP's better than 10.0 without gapping: 6221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6918
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---