| Clone Name | bags39p17 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X98124.1|HVJIP H.vulgare gene encoding jasmonate-induced protein Length = 2897 Score = 155 bits (78), Expect = 2e-34 Identities = 237/290 (81%) Strand = Plus / Plus Query: 180 gtacggtaatggaatatctgtaaaatgcctcatctacaatgctaccggtaccaatctgag 239 ||||||||| |||||| ||||||||||||||||||||||||| || ||| ||| | |||| Sbjct: 2306 gtacggtaacggaatagctgtaaaatgcctcatctacaatgccactggtgccactttgag 2365 Query: 240 tttcgtcacgtacaagaattggattggcagtatctttgatacaccctacccatcggatat 299 || | | |||||| ||||| ||| ||||| |||||| ||||||||||| ||||| Sbjct: 2366 cttggctaagtacaacgattggcacggccatatctatgatactccctacccatcagatat 2425 Query: 300 tcagaatggacaatggggggcatttctccacgtcaaaccaagagcagctgcgaaaggttc 359 ||||||||| |||||||| ||||| ||||||||| | ||||| | |||||| ||||| Sbjct: 2426 tcagaatgggcaatggggtgcattcctccacgtccacccaagtggtgctgcggttggttc 2485 Query: 360 aactgccgctgttgtgtatcgtagcaggatcccgtccagcagcagctcctgcgactggtt 419 | ||| || ||||||||||||| || |||||| ||||||||||| |||||||| ||||| Sbjct: 2486 agctggtgccgttgtgtatcgtaccaagatcccctccagcagcaggtcctgcgattggtt 2545 Query: 420 attcacttggtctgtcccattcattggcaacaacggggtaaataatgtgc 469 ||| | ||| | | ||| | |||||| ||||||||||||||| ||||| Sbjct: 2546 gttctcctggaccgccccctacattggtgacaacggggtaaatactgtgc 2595 Score = 147 bits (74), Expect = 5e-32 Identities = 139/161 (86%) Strand = Plus / Plus Query: 7 caaatggcctccggngtgtttggtatccccatttcaatgcagacggtgatagccactgga 66 ||||||||||| || |||||||||| ||||||||| | ||||||||||||||||||| Sbjct: 2004 caaatggcctcaggagtgtttggtacccccatttcggagaagacggtgatagccactggt 2063 Query: 67 gagtataaagaacccgtcacccaaaaagatgttgccgactataccatgaagatgatcaac 126 |||||||| |||||| | || ||||| |||||||| |||||| ||||||||||||||||| Sbjct: 2064 gagtataaggaacccattactcaaaaggatgttgcagactatgccatgaagatgatcaac 2123 Query: 127 gcgggtggcaaggatattgacgcacaacaattcgtcgacaa 167 || ||||| ||||||||| |||||| | ||||||||||| Sbjct: 2124 gccggtggtaaggatattaacgcactaaccttcgtcgacaa 2164
>gb|AC006369.3| Homo sapiens BAC clone RP11-278G12 from 2, complete sequence Length = 188359 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Plus Query: 455 gggtaaataatgtgcttaccttcaaatatt 484 |||||||| ||||||||||| ||||||||| Sbjct: 3358 gggtaaatgatgtgcttaccatcaaatatt 3387
>emb|AL021786.2|HS696H22 Human DNA sequence from clone RP4-696H22 on chromosome Xq21.1-21.2 Contains the 3' end of the ITM2A gene for integral membrane protein 2A and a kinesin family member 4A (KIF4A) pseudogene, complete sequence Length = 70665 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 564 taaatttatatgcaatcaaaa 584 ||||||||||||||||||||| Sbjct: 8924 taaatttatatgcaatcaaaa 8944
>dbj|AB116982.1| Clematis afoliata chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1646 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 477 caaatattctatcttacttatttct 501 ||||| ||||||||||||||||||| Sbjct: 522 caaattttctatcttacttatttct 498
>dbj|AB116973.1| Clematis patens chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1647 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 477 caaatattctatcttacttatttct 501 ||||| ||||||||||||||||||| Sbjct: 522 caaattttctatcttacttatttct 498
>gb|AC150843.16| Medicago truncatula clone mth2-103p8, complete sequence Length = 125707 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ataccatgaagatgatcaac 126 |||||||||||||||||||| Sbjct: 94822 ataccatgaagatgatcaac 94803
>ref|NM_166340.1| Drosophila melanogaster endophilin B CG9834-RB, transcript variant B (endoB), mRNA Length = 2224 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gatcccgtccagcagcagct 406 |||||||||||||||||||| Sbjct: 794 gatcccgtccagcagcagct 775
>ref|NM_137566.2| Drosophila melanogaster endophilin B CG9834-RA, transcript variant A (endoB), mRNA Length = 2260 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gatcccgtccagcagcagct 406 |||||||||||||||||||| Sbjct: 830 gatcccgtccagcagcagct 811
>gb|AY071608.1| Drosophila melanogaster RE65748 full length cDNA Length = 2269 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gatcccgtccagcagcagct 406 |||||||||||||||||||| Sbjct: 830 gatcccgtccagcagcagct 811
>gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A15, complete sequence Length = 193254 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 aatcaaaagttgaagctgga 596 |||||||||||||||||||| Sbjct: 81383 aatcaaaagttgaagctgga 81402
>gb|AC008344.2|AC008344 Drosophila melanogaster, chromosome 2R, region 56C-56D, BAC clone BACR19I21, complete sequence Length = 171981 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gatcccgtccagcagcagct 406 |||||||||||||||||||| Sbjct: 120624 gatcccgtccagcagcagct 120643
>gb|AC008096.3|AC008096 Drosophila melanogaster, chromosome 2R, region 56C-56D, BAC clone BACR21D20, complete sequence Length = 176813 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gatcccgtccagcagcagct 406 |||||||||||||||||||| Sbjct: 135981 gatcccgtccagcagcagct 135962
>gb|AC009499.4| Homo sapiens BAC clone RP11-510D10 from 2, complete sequence Length = 176570 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 555 aagaacacataaatttatat 574 |||||||||||||||||||| Sbjct: 36403 aagaacacataaatttatat 36384
>ref|XM_226703.3| PREDICTED: Rattus norvegicus similar to core 2 beta-1,6-N-acetylglucosaminyltransferase 3 (LOC310011), mRNA Length = 1420 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 tgcatttacggagctgcaga 637 |||||||||||||||||||| Sbjct: 1190 tgcatttacggagctgcaga 1209
>emb|BX470229.4| Zebrafish DNA sequence from clone DKEY-193B15 in linkage group 2, complete sequence Length = 241018 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 568 tttatatgcaatcaaaagtt 587 |||||||||||||||||||| Sbjct: 46882 tttatatgcaatcaaaagtt 46901
>emb|AL953855.9| Zebrafish DNA sequence from clone CH211-239F4 in linkage group 1, complete sequence Length = 146080 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tgtaaaatgcctcatctaca 217 |||||||||||||||||||| Sbjct: 15143 tgtaaaatgcctcatctaca 15124
>dbj|AB116999.1| Clematis gentianoides chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphate carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1678 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 548 aaattttctatcttacttatttct 525
>dbj|AB116996.1| Clematis vitalba chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphate carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1667 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 542 aaattttctatcttacttatttct 519
>dbj|AB116994.1| Clematis serratifolia chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphate carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1646 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 521 aaattttctatcttacttatttct 498
>dbj|AB116993.1| Clematis brachyura chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 528 aaattttctatcttacttatttct 505
>dbj|AB116990.1| Clematis ligusticifolia chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1660 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 535 aaattttctatcttacttatttct 512
>dbj|AB116988.1| Clematis angustifolia chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 528 aaattttctatcttacttatttct 505
>dbj|AB116985.1| Clematis orientalis chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1652 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 527 aaattttctatcttacttatttct 504
>dbj|AB116984.1| Clematis tangutica chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1652 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 527 aaattttctatcttacttatttct 504
>dbj|AB116983.1| Clematis crassifolia chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1660 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 535 aaattttctatcttacttatttct 512
>dbj|AB116981.1| Clematis tashiroi chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1646 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 521 aaattttctatcttacttatttct 498
>dbj|AB116980.1| Clematis pierotii chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1662 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 537 aaattttctatcttacttatttct 514
>dbj|AB116978.1| Clematis uncinata var. ovatifolia chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1665 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 540 aaattttctatcttacttatttct 517
>dbj|AB116977.1| Clematis stans chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1667 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 542 aaattttctatcttacttatttct 519
>dbj|AB116976.1| Clematis japonica chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1667 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 542 aaattttctatcttacttatttct 519
>dbj|AB116972.1| Clematis terniflora chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 528 aaattttctatcttacttatttct 505
>dbj|AB116970.1| Clematis williamsii chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1667 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 542 aaattttctatcttacttatttct 519
>dbj|AB116969.1| Clematis apiifolia chloroplast rbcL, accD genes for large subunit of riblose-1,5-bisphosphase carboxylase/oxygenase, carboxytransferase beta subunit, partial cds Length = 1667 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 aaatattctatcttacttatttct 501 |||| ||||||||||||||||||| Sbjct: 542 aaattttctatcttacttatttct 519
>gb|AE003796.3| Drosophila melanogaster chromosome 2R, section 54 of 73 of the complete sequence Length = 277421 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gatcccgtccagcagcagct 406 |||||||||||||||||||| Sbjct: 131077 gatcccgtccagcagcagct 131096
>gb|BT001605.1| Drosophila melanogaster RE31027 full insert cDNA Length = 2191 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gatcccgtccagcagcagct 406 |||||||||||||||||||| Sbjct: 752 gatcccgtccagcagcagct 733
>emb|AJ437142.1|DME437142 Drosophila melanogaster mRNA for endophilin B (CG9834 gene) Length = 1319 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gatcccgtccagcagcagct 406 |||||||||||||||||||| Sbjct: 723 gatcccgtccagcagcagct 704 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,839,794 Number of Sequences: 3902068 Number of extensions: 5839794 Number of successful extensions: 109424 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109376 Number of HSP's gapped (non-prelim): 46 length of query: 659 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 636 effective length of database: 17,143,297,704 effective search space: 10903137339744 effective search space used: 10903137339744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)