Clone Information

BLAST Search Result

Clone Name	bags39o13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncologic...	54	4e-07
2	Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g1...	52	8e-07
3	NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncologic...	52	8e-07
4	NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological...	52	1e-06
5	NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncologic...	52	1e-06
6	FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-...	51	2e-06
7	FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUS...	51	2e-06
8	PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)	47	3e-05
9	PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)	47	3e-05
10	YBD2_YEAST (P38199) Hypothetical 41.7 kDa protein in RIB1-AAC2 i...	47	5e-05
11	FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUS...	46	6e-05
12	PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	46	6e-05
13	PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	46	6e-05
14	PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR...	46	6e-05
15	PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnR...	46	6e-05
16	PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Put...	46	6e-05
17	HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC...	46	8e-05
18	HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (...	46	8e-05
19	HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K	46	8e-05
20	HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (...	46	8e-05
21	ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2	45	1e-04
22	PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)	44	3e-04
23	PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)	44	4e-04
24	FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUS...	43	5e-04
25	PBP2_YEAST (P38151) PAB1-binding protein 2	42	9e-04
26	FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUS...	41	0.002
27	VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding pro...	34	0.23
28	VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding p...	34	0.23
29	VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding p...	34	0.23
30	TIG_XYLFT (Q87E52) Trigger factor (TF)	33	0.40
31	VIGLN_CHICK (P81021) Vigilin	33	0.52
32	TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein	33	0.67
33	41_DROME (Q9V8R9) Protein 4.1 homolog (Protein coracle)	33	0.67
34	RS3_HELPY (P56010) 30S ribosomal protein S3	31	2.0
35	TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein	31	2.6
36	SC160_YEAST (P06105) Protein SCP160 (Protein HX)	30	4.4
37	KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3...	30	5.7
38	RS3_HELPJ (Q9ZJR9) 30S ribosomal protein S3	30	5.7
39	RS3_WOLSU (Q7M8E0) 30S ribosomal protein S3	29	7.5
40	ROCA_OCEIH (Q8ERF4) 1-pyrroline-5-carboxylate dehydrogenase (EC ...	29	9.7
41	VHSJ_LAMBD (P03749) Host specificity protein J	29	9.7
42	AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial prec...	29	9.7
43	AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial pr...	29	9.7

>NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncological ventral|
           antigen 2) (Astrocytic NOVA1-like RNA-binding protein)
          Length = 492

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 28/70 (40%), Positives = 45/70 (64%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           +L+VP S AG +IGK GAT+K++ + S + V++ +    + L  +RVV + GEP  VHKA
Sbjct: 134 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINL-QERVVTVSGEPEQVHKA 192

Query: 335 VELIANHLRK 364
           V  I   +++
Sbjct: 193 VSAIVQKVQE 202



 Score = 38.5 bits (88), Expect = 0.012
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
 Frame = +2

Query: 83  KRITDGSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVEN 262
           KR   G +GE+             ++L+P+  AGS+IGK G TI  +Q  + + +++ ++
Sbjct: 23  KRSNTGEEGEYF-----------LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 71

Query: 263 VPPVALNDDRVVEIQGEPLGVHKAVELIANHLRKF---LVDHSVLPLFEQQMKMHSVQRE 433
                   +RV  +QG    ++     IA  +R+    +    V+ + + Q  M+  + +
Sbjct: 72  KDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAK 131

Query: 434 Q 436
           Q
Sbjct: 132 Q 132



 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +2

Query: 158 LLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAV 337
           + VP +  G+++GK G T+   Q+ + + ++I +    +    +R V I G P     A 
Sbjct: 411 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQ 470

Query: 338 ELIANHL 358
            LI+  +
Sbjct: 471 YLISQRV 477

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>Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g18375|
          Length = 606

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
 Frame = +2

Query: 38  DEPISPAMDGLLRIHKRITDGSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIK 217
           +EP+  A D LL+++  I    +    +      +    RLLVP SQ+ SLIGK G  IK
Sbjct: 103 NEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIK 162

Query: 218 SIQDSSKSVVRIV-----ENVPPVALNDDRVVEIQGEPLGVHKAV 337
            I+  +++ V++V     +     A+  D VV I GEP  V +A+
Sbjct: 163 RIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQAL 207



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 34/121 (28%), Positives = 57/121 (47%)
 Frame = +2

Query: 2   ERAVIISAKDEPDEPISPAMDGLLRIHKRITDGSDGEFGQPQRGASNVGPTRLLVPASQA 181
           E  +I++A + PD+  S A++ +L + + I D            A NV   +LLV +   
Sbjct: 358 ECVIIVTATESPDDMKSMAVEAVLLLQEYIND----------EDAENV-KMQLLVSSKVI 406

Query: 182 GSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVELIANHLR 361
           G +IGK G+ I  I+  + + + I +         D +VE+ GE   V  A+  I   LR
Sbjct: 407 GCVIGKSGSVINEIRKRTNANICISKG------KKDDLVEVSGEVSSVRDALIQIVLRLR 460

Query: 362 K 364
           +
Sbjct: 461 E 461

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>NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Ventral neuron-specific protein 1)
           (Fragment)
          Length = 493

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 29/76 (38%), Positives = 46/76 (60%)
 Frame = +2

Query: 137 SNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEP 316
           S     +++VP S AG +IGK GAT+K+I + S + V++ +    + L  +RVV + GEP
Sbjct: 155 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QERVVTVSGEP 213

Query: 317 LGVHKAVELIANHLRK 364
               KAVELI   +++
Sbjct: 214 EQNRKAVELIIQKIQE 229



 Score = 37.7 bits (86), Expect = 0.021
 Identities = 25/94 (26%), Positives = 45/94 (47%)
 Frame = +2

Query: 83  KRITDGSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVEN 262
           KR   G DG++             ++L+P+  AGS+IGK G TI  +Q  + + +++ ++
Sbjct: 26  KRTNTGEDGQYF-----------LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 74

Query: 263 VPPVALNDDRVVEIQGEPLGVHKAVELIANHLRK 364
                   +RV  IQG    ++     IA  +R+
Sbjct: 75  KDFYPGTTERVCLIQGTIEALNAVHGFIAEKIRE 108



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 158 LLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAV 337
           + VP +  G+++GK G T+   Q+ + + ++I +    V    +R V I G P     A 
Sbjct: 412 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQ 471

Query: 338 ELIANHL 358
            LI   +
Sbjct: 472 YLITQRI 478

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>NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Fragment)
          Length = 474

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
 Frame = +2

Query: 119 QPQRGAS--NVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDR 292
           QPQ   +   +   +++VP S AG +IGK GAT+K+I + S + V++ +    + L  +R
Sbjct: 136 QPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL-QER 194

Query: 293 VVEIQGEPLGVHKAVELIANHLRK 364
           VV + GEP    KAVELI   +++
Sbjct: 195 VVTVSGEPEQNRKAVELIIQKIQE 218



 Score = 37.7 bits (86), Expect = 0.021
 Identities = 25/94 (26%), Positives = 45/94 (47%)
 Frame = +2

Query: 83  KRITDGSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVEN 262
           KR   G DG++             ++L+P+  AGS+IGK G TI  +Q  + + +++ ++
Sbjct: 39  KRTNTGEDGQYF-----------LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 87

Query: 263 VPPVALNDDRVVEIQGEPLGVHKAVELIANHLRK 364
                   +RV  IQG    ++     IA  +R+
Sbjct: 88  KDFYPGTTERVCLIQGTIEALNAVHGFIAEKIRE 121



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 158 LLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAV 337
           + VP +  G+++GK G T+   Q+ + + ++I +    V    +R V I G P     A 
Sbjct: 401 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQ 460

Query: 338 ELIANHL 358
            LI   +
Sbjct: 461 YLITQRI 467

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>NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Onconeural ventral antigen 1)
           (Paraneoplastic Ri antigen) (Ventral neuron-specific
           protein 1)
          Length = 510

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 28/76 (36%), Positives = 46/76 (60%)
 Frame = +2

Query: 137 SNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEP 316
           S     +++VP S AG +IGK GAT+K++ + S + V++ +    + L  +RVV + GEP
Sbjct: 172 SRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINL-QERVVTVSGEP 230

Query: 317 LGVHKAVELIANHLRK 364
               KAVELI   +++
Sbjct: 231 EQNRKAVELIIQKIQE 246



 Score = 33.1 bits (74), Expect = 0.52
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 83  KRITDGSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRI 253
           KR   G DG++             ++L+P+  AGS+IGK G TI  +Q  + + +++
Sbjct: 40  KRTNTGEDGQYF-----------LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKL 85



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 158 LLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAV 337
           + VP +  G+++GK G T+   Q+ + + ++I +    V    +R V I G P     A 
Sbjct: 429 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQ 488

Query: 338 ELIANHL 358
            LI   +
Sbjct: 489 YLITQRI 495

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>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (MAP2 RNA trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 35/121 (28%), Positives = 60/121 (49%)
 Frame = +2

Query: 2   ERAVIISAKDEPDEPISPAMDGLLRIHKRITDGSDGEFGQPQRGASNVGPTRLLVPASQA 181
           ER+V ++   E  +     +D ++    R   G  G+F     G  N     +++PA +A
Sbjct: 190 ERSVSLTGAPESVQKAKMMLDDIV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKA 246

Query: 182 GSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVELIANHLR 361
           G +IGK G TIK +Q+ +  V  I+        N D+ + I G+P  V +A E++ + LR
Sbjct: 247 GLVIGKGGETIKQLQERA-GVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 305

Query: 362 K 364
           +
Sbjct: 306 E 306



 Score = 38.1 bits (87), Expect = 0.016
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
 Frame = +2

Query: 2   ERAVIISAKDEPDEPISPAMDGLLRIHKRITDGSDGEFGQPQ------RGASNVGPT--- 154
           E+   I    +  E  +  ++ LL+  +    G  G  G P       RG  N GP    
Sbjct: 368 EKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGE 427

Query: 155 -RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHK 331
               +P  + G +IG+ G  +K+I   + + V I   +PP    + ++  I+G P  +  
Sbjct: 428 MTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDH 487

Query: 332 AVELI 346
           A +LI
Sbjct: 488 AKQLI 492

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>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (p75)
          Length = 707

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 35/120 (29%), Positives = 59/120 (49%)
 Frame = +2

Query: 2   ERAVIISAKDEPDEPISPAMDGLLRIHKRITDGSDGEFGQPQRGASNVGPTRLLVPASQA 181
           ER+V ++   E  +     +D ++    R   G  G+F     G  N     +++PA +A
Sbjct: 189 ERSVSLTGAPESVQKAKMMLDDIV---SRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKA 245

Query: 182 GSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVELIANHLR 361
           G +IGK G TIK +Q+ +  V  I+        N D+ + I G+P  V +A E++ + LR
Sbjct: 246 GLVIGKGGETIKQLQERA-GVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 304



 Score = 38.5 bits (88), Expect = 0.012
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +2

Query: 128 RGASNVGP---TRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVV 298
           RG  N GP       +P  + G +IG+ G  +K+I   + + V I   +PP      ++ 
Sbjct: 414 RGQGNWGPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPTGTPTSKLF 473

Query: 299 EIQGEPLGVHKAVELI 346
            I+G P  +    +LI
Sbjct: 474 IIRGSPQQIDHCRQLI 489

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>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 27/64 (42%), Positives = 42/64 (65%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           RL+VPASQ GSLIGK G+ IK I++S+ + V++  ++ P   + +R V I G P  + + 
Sbjct: 101 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAIIQC 158

Query: 335 VELI 346
           V+ I
Sbjct: 159 VKQI 162



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = +2

Query: 131 GASNVGPT-RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQ 307
           G  NV  T RLL+   + GS+IGK+G T+K +++ S + + I E   P     +R+V I 
Sbjct: 8   GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTIT 62

Query: 308 GEPLGVHKAVELIANHLRKFLVD 376
           G    + KA  +IA    + +++
Sbjct: 63  GPTDAIFKAFAMIAYKFEEDIIN 85



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 158 LLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAV 337
           L +P    G +IG+QG  I  I+  S + ++I         + +R + I G P  +  A 
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEG---SSERQITITGTPANISLAQ 322

Query: 338 ELI 346
            LI
Sbjct: 323 YLI 325

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>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 27/64 (42%), Positives = 42/64 (65%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           RL+VPASQ GSLIGK G+ IK I++S+ + V++  ++ P   + +R V I G P  + + 
Sbjct: 101 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP--NSTERAVTISGTPDAIIQC 158

Query: 335 VELI 346
           V+ I
Sbjct: 159 VKQI 162



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = +2

Query: 131 GASNVGPT-RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQ 307
           G  NV  T RLL+   + GS+IGK+G T+K +++ S + + I E   P     +R+V I 
Sbjct: 8   GGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP-----ERIVTIT 62

Query: 308 GEPLGVHKAVELIANHLRKFLVD 376
           G    + KA  +IA    + +++
Sbjct: 63  GPTDAIFKAFAMIAYKFEEDIIN 85



 Score = 30.0 bits (66), Expect = 4.4
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 158 LLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAV 337
           L +P    G +IG+QG  I  I+  S + ++I         + +R + I G P  +  A 
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEG---SSERQITITGTPANISLAQ 322

Query: 338 ELI 346
            LI
Sbjct: 323 YLI 325

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>YBD2_YEAST (P38199) Hypothetical 41.7 kDa protein in RIB1-AAC2 intergenic|
           region
          Length = 381

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 26/59 (44%), Positives = 39/59 (66%)
 Frame = +2

Query: 140 NVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEP 316
           ++G  RL+V  S   S+IGK GATIKS+   +K  V+IV +   +  +D+R++EIQG P
Sbjct: 155 DIGYVRLIVANSHISSIIGKAGATIKSL--INKHGVKIVASKDFLPASDERIIEIQGFP 211



 Score = 37.7 bits (86), Expect = 0.021
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
 Frame = +2

Query: 92  TDGSDGEFGQPQRGASNVGPT--------RLLVPASQAGSLIGKQGATIKSIQDSSKSVV 247
           T+G   + G    G + V  T        RLL+   +A  +IG +G+TI  I+ ++   +
Sbjct: 18  TNGGSSDAGSAATGGAPVVGTTAQPTINHRLLLSLKEAAKIIGTKGSTISRIRAANAVKI 77

Query: 248 RIVENVPPVALNDDRVVEIQGEPLGVHKAVELIANHLRK 364
            I E VP  +   DR++   G  + V  A+  I + L K
Sbjct: 78  GISEKVPGCS---DRILSCAGNVINVANAIGDIVDVLNK 113

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>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
 Frame = +2

Query: 2   ERAVIISAKDEPDEPISPAMDGLLRIHKRITDGSDGEFGQPQ---RGASNVGPT------ 154
           ER   I+   +  +  +  +  LLR  +    G  G  G+ +   +G  N+GP       
Sbjct: 319 ERIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEF 378

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
             +VP  + G +IGK G TIKSI   S + + +  N PP A  + ++  I+G P  +  A
Sbjct: 379 NFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYA 438

Query: 335 VELI 346
            +LI
Sbjct: 439 RQLI 442



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 23/68 (33%), Positives = 40/68 (58%)
 Frame = +2

Query: 158 LLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAV 337
           +++PAS+AG +IGK G TIK +Q+ +  V  ++    P     D+ + I G+P  V +A 
Sbjct: 189 IMIPASKAGLVIGKGGETIKQLQERA-GVKMVMIQDGPQNTGADKPLRITGDPYKVQQAK 247

Query: 338 ELIANHLR 361
           E++   +R
Sbjct: 248 EMVLELIR 255

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>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 26/64 (40%), Positives = 41/64 (64%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           RL+VPA+Q GSLIGK G  IK I++S+ + V++  ++ P   + +R + I G P  V + 
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGVPQSVTEC 158

Query: 335 VELI 346
           V+ I
Sbjct: 159 VKQI 162



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 23/83 (27%), Positives = 43/83 (51%)
 Frame = +2

Query: 116 GQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRV 295
           G  + G +     RLL+   + GS+IGK+G ++K I++ S + + I E   P     +R+
Sbjct: 4   GVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP-----ERI 58

Query: 296 VEIQGEPLGVHKAVELIANHLRK 364
           + + G    + KA  +I + L +
Sbjct: 59  ITLTGPTNAIFKAFAMIIDKLEE 81



 Score = 33.5 bits (75), Expect = 0.40
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +2

Query: 134 ASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGE 313
           AS      L +P +  G +IG+QGA I  I+  S + ++I     PV  +  R V I G 
Sbjct: 276 ASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN---PVEGSSGRQVTITGS 332

Query: 314 PLGVHKAVELI 346
              +  A  LI
Sbjct: 333 AASISLAQYLI 343

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>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 26/64 (40%), Positives = 41/64 (64%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           RL+VPA+Q GSLIGK G  IK I++S+ + V++  ++ P   + +R + I G P  V + 
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGVPQSVTEC 158

Query: 335 VELI 346
           V+ I
Sbjct: 159 VKQI 162



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 23/83 (27%), Positives = 43/83 (51%)
 Frame = +2

Query: 116 GQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRV 295
           G  + G +     RLL+   + GS+IGK+G ++K I++ S + + I E   P     +R+
Sbjct: 4   GVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP-----ERI 58

Query: 296 VEIQGEPLGVHKAVELIANHLRK 364
           + + G    + KA  +I + L +
Sbjct: 59  ITLTGPTNAIFKAFAMIIDKLEE 81



 Score = 33.5 bits (75), Expect = 0.40
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +2

Query: 134 ASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGE 313
           AS      L +P +  G +IG+QGA I  I+  S + ++I     PV  +  R V I G 
Sbjct: 276 ASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN---PVEGSSGRQVTITGS 332

Query: 314 PLGVHKAVELI 346
              +  A  LI
Sbjct: 333 AASISLAQYLI 343

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>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic|
           acid-binding protein SUB2.3)
          Length = 356

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 26/64 (40%), Positives = 41/64 (64%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           RL+VPA+Q GSLIGK G  IK I++S+ + V++  ++ P   + +R + I G P  V + 
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGVPQSVTEC 158

Query: 335 VELI 346
           V+ I
Sbjct: 159 VKQI 162



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 23/83 (27%), Positives = 43/83 (51%)
 Frame = +2

Query: 116 GQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRV 295
           G  + G +     RLL+   + GS+IGK+G ++K I++ S + + I E   P     +R+
Sbjct: 4   GVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCP-----ERI 58

Query: 296 VEIQGEPLGVHKAVELIANHLRK 364
           + + G    + KA  +I + L +
Sbjct: 59  ITLTGPTNAIFKAFAMIIDKLEE 81



 Score = 33.5 bits (75), Expect = 0.40
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +2

Query: 134 ASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGE 313
           AS      L +P +  G +IG+QGA I  I+  S + ++I     PV  +  R V I G 
Sbjct: 276 ASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN---PVEGSSGRQVTITGS 332

Query: 314 PLGVHKAVELI 346
              +  A  LI
Sbjct: 333 AASISLAQYLI 343

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>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)|
          Length = 365

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 26/64 (40%), Positives = 41/64 (64%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           RL+VPASQ GSLIGK G  IK I++S+ + V++  ++ P   + +R + I G P  + + 
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGIPQSIIEC 158

Query: 335 VELI 346
           V+ I
Sbjct: 159 VKQI 162



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +2

Query: 131 GASNVGPT-RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQ 307
           G  NV  T RLL+   + GS+IGK+G ++K +++ S + + I E   P     +R++ + 
Sbjct: 8   GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLA 62

Query: 308 GEPLGVHKAVELIANHLRK 364
           G    + KA  +I + L +
Sbjct: 63  GPTNAIFKAFAMIIDKLEE 81



 Score = 34.7 bits (78), Expect = 0.18
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = +2

Query: 158 LLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAV 337
           L +P    G +IG+QGA I  I+  S + ++I     PV  + DR V I G    +  A 
Sbjct: 292 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN---PVEGSTDRQVTITGSAASISLAQ 348

Query: 338 ELI 346
            LI
Sbjct: 349 YLI 351

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>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative|
           heterogeneous nuclear ribonucleoprotein X) (hnRNP X)
           (CTBP) (CBP)
          Length = 362

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 26/64 (40%), Positives = 41/64 (64%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           RL+VPASQ GSLIGK G  IK I++S+ + V++  ++ P   + +R + I G P  + + 
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP--NSTERAITIAGIPQSIIEC 158

Query: 335 VELI 346
           V+ I
Sbjct: 159 VKQI 162



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +2

Query: 131 GASNVGPT-RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQ 307
           G  NV  T RLL+   + GS+IGK+G ++K +++ S + + I E   P     +R++ + 
Sbjct: 8   GGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCP-----ERIITLA 62

Query: 308 GEPLGVHKAVELIANHLRK 364
           G    + KA  +I + L +
Sbjct: 63  GPTNAIFKAFAMIIDKLEE 81



 Score = 34.7 bits (78), Expect = 0.18
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = +2

Query: 158 LLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAV 337
           L +P    G +IG+QGA I  I+  S + ++I     PV  + DR V I G    +  A 
Sbjct: 289 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN---PVEGSTDRQVTITGSAASISLAQ 345

Query: 338 ELI 346
            LI
Sbjct: 346 YLI 348

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>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC|
           stretch-binding protein) (CSBP)
          Length = 463

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 28/90 (31%), Positives = 49/90 (54%)
 Frame = +2

Query: 98  GSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVA 277
           GS G+ G P      +  T++ +P   AGS+IGK G  IK I+  S + ++I E   P+ 
Sbjct: 378 GSYGDLGGP------IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE---PLE 428

Query: 278 LNDDRVVEIQGEPLGVHKAVELIANHLRKF 367
            ++DR++ I G    +  A  L+ N ++++
Sbjct: 429 GSEDRIITITGTQDQIQNAQYLLQNSVKQY 458



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/64 (34%), Positives = 42/64 (65%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           RLL+  S AG +IG +GA IK +++++++ +++ +   P   + DRVV I G+P  V + 
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCP--HSTDRVVLIGGKPDRVVEC 205

Query: 335 VELI 346
           +++I
Sbjct: 206 IKII 209

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>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
          Length = 463

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 28/90 (31%), Positives = 49/90 (54%)
 Frame = +2

Query: 98  GSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVA 277
           GS G+ G P      +  T++ +P   AGS+IGK G  IK I+  S + ++I E   P+ 
Sbjct: 378 GSYGDLGGP------IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE---PLE 428

Query: 278 LNDDRVVEIQGEPLGVHKAVELIANHLRKF 367
            ++DR++ I G    +  A  L+ N ++++
Sbjct: 429 GSEDRIITITGTQDQIQNAQYLLQNSVKQY 458



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/64 (34%), Positives = 42/64 (65%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           RLL+  S AG +IG +GA IK +++++++ +++ +   P   + DRVV I G+P  V + 
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCP--HSTDRVVLIGGKPDRVVEC 205

Query: 335 VELI 346
           +++I
Sbjct: 206 IKII 209

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>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K|
          Length = 463

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 28/90 (31%), Positives = 49/90 (54%)
 Frame = +2

Query: 98  GSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVA 277
           GS G+ G P      +  T++ +P   AGS+IGK G  IK I+  S + ++I E   P+ 
Sbjct: 378 GSYGDLGGP------IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE---PLE 428

Query: 278 LNDDRVVEIQGEPLGVHKAVELIANHLRKF 367
            ++DR++ I G    +  A  L+ N ++++
Sbjct: 429 GSEDRIITITGTQDQIQNAQYLLQNSVKQY 458



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/64 (34%), Positives = 42/64 (65%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           RLL+  S AG +IG +GA IK +++++++ +++ +   P   + DRVV I G+P  V + 
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCP--HSTDRVVLIGGKPDRVVEC 205

Query: 335 VELI 346
           +++I
Sbjct: 206 IKII 209

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>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
           (Transformation up-regulated nuclear protein) (TUNP)
          Length = 463

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 28/90 (31%), Positives = 49/90 (54%)
 Frame = +2

Query: 98  GSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVA 277
           GS G+ G P      +  T++ +P   AGS+IGK G  IK I+  S + ++I E   P+ 
Sbjct: 378 GSYGDLGGP------IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE---PLE 428

Query: 278 LNDDRVVEIQGEPLGVHKAVELIANHLRKF 367
            ++DR++ I G    +  A  L+ N ++++
Sbjct: 429 GSEDRIITITGTQDQIQNAQYLLQNSVKQY 458



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/64 (34%), Positives = 42/64 (65%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           RLL+  S AG +IG +GA IK +++++++ +++ +   P   + DRVV I G+P  V + 
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCP--HSTDRVVLIGGKPDRVVEC 205

Query: 335 VELI 346
           +++I
Sbjct: 206 IKII 209

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>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2|
          Length = 769

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 35/121 (28%), Positives = 59/121 (48%)
 Frame = +2

Query: 2   ERAVIISAKDEPDEPISPAMDGLLRIHKRITDGSDGEFGQPQRGASNVGPTRLLVPASQA 181
           ER+V ++   E  +     +D ++    R   G  G+F     G  N     +++PA +A
Sbjct: 253 ERSVSLTGSPEAVQKAKLMLDDIV---SRGRGGPPGQFHDYANG-QNGTVQEIMIPAGKA 308

Query: 182 GSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVELIANHLR 361
           G +IGK G TIK +Q+ +  V  I         N D+ + I G+P  V +A E++ + LR
Sbjct: 309 GLVIGKGGETIKQLQERA-GVKMIFIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 367

Query: 362 K 364
           +
Sbjct: 368 E 368



 Score = 32.0 bits (71), Expect = 1.1
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +2

Query: 146 GPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGV 325
           G     +P  + G +IG+ G  +K+I     + V I   +PP    + ++  I+G P  +
Sbjct: 487 GEMTFSIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQI 546

Query: 326 HKAVELI 346
             A + I
Sbjct: 547 EHAKQPI 553

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>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
 Frame = +2

Query: 122 PQRGASNVGPT---RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDR 292
           P  G S   P    RL++PASQ GSLIGK G  IK I++++ + V++  ++ P   + +R
Sbjct: 91  PANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLP--NSTER 148

Query: 293 VVEIQGEP 316
            V + G P
Sbjct: 149 AVTVSGVP 156



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 23/65 (35%), Positives = 36/65 (55%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           R+L+   + GS+IGK+G T+K I++ S + + I E   P     +R+  I G    V  A
Sbjct: 21  RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP-----ERITTITGSTAAVFHA 75

Query: 335 VELIA 349
           V +IA
Sbjct: 76  VSMIA 80



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +2

Query: 161 LVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVE 340
           LVP    G +IG+QG+ I  I+  S + ++I           +R V I G P+ +  A  
Sbjct: 247 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAG---ERHVTITGSPVSIALAQY 303

Query: 341 LI 346
           LI
Sbjct: 304 LI 305

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>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 22/54 (40%), Positives = 36/54 (66%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEP 316
           RL++PASQ GSLIGK G  IK I++++ + V++  ++ P   + +R V + G P
Sbjct: 105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLP--NSTERAVTVSGVP 156



 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 28/84 (33%), Positives = 43/84 (51%)
 Frame = +2

Query: 98  GSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVA 277
           GSDG   + +   S     R+L+   + GS+IGK+G T+K I++ S + + I E   P  
Sbjct: 3   GSDGGL-EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCP-- 59

Query: 278 LNDDRVVEIQGEPLGVHKAVELIA 349
              +R+  I G    V  AV +IA
Sbjct: 60  ---ERITTITGSTAAVFHAVSMIA 80



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +2

Query: 161 LVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVE 340
           LVP    G +IG+QG+ I  I+  S + ++I           +R V I G P+ +  A  
Sbjct: 247 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAG---ERHVTITGSPVSIALAQY 303

Query: 341 LI 346
           LI
Sbjct: 304 LI 305

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>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP)
          Length = 651

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
 Frame = +2

Query: 68  LLRIHKRITDGSDGEFGQPQ---RGASNVGPT------RLLVPASQAGSLIGKQGATIKS 220
           LLR  +    G  G  G+ +   +G  N+GP         +VP  + G +IGK G TIKS
Sbjct: 338 LLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKS 397

Query: 221 IQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVELI 346
           I   S + + +  + PP A  + ++  I+G P  +  A +LI
Sbjct: 398 ISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLI 439



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 23/68 (33%), Positives = 40/68 (58%)
 Frame = +2

Query: 158 LLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAV 337
           +++PAS+AG +IGK G TIK +Q+ +  V  ++    P     D+ + I G+P  V +A 
Sbjct: 186 IMIPASKAGLVIGKGGETIKQLQERA-GVKMVMIQDGPQNTGADKPLRITGDPYKVQQAK 244

Query: 338 ELIANHLR 361
           E++   +R
Sbjct: 245 EMVLELIR 252



 Score = 33.9 bits (76), Expect = 0.30
 Identities = 23/66 (34%), Positives = 33/66 (50%)
 Frame = +2

Query: 164 VPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVEL 343
           +P    G +IG+ G  IK IQ+ +   VRI +  P      DR+ +I G P     A E+
Sbjct: 278 IPRFAVGIVIGRNGEMIKKIQNDAG--VRI-QFKPDDGTTPDRIAQITGPPDRCQHAAEI 334

Query: 344 IANHLR 361
           I + LR
Sbjct: 335 ITDLLR 340

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>PBP2_YEAST (P38151) PAB1-binding protein 2|
          Length = 413

 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 25/89 (28%), Positives = 44/89 (49%)
 Frame = +2

Query: 110 EFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDD 289
           E G    G        LL+P    G +IGK+G+ ++ I+D   S  ++  +   + L++D
Sbjct: 137 EHGNEDNGEDIEISINLLIPHHLMGCIIGKRGSRLREIED--LSAAKLFASPNQLLLSND 194

Query: 290 RVVEIQGEPLGVHKAVELIANHLRKFLVD 376
           R++ I G P  +H A   I+  L  F ++
Sbjct: 195 RILTINGVPDAIHIATFYISQTLLNFQME 223

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>FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUSE-binding|
           protein 3)
          Length = 572

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 23/76 (30%), Positives = 42/76 (55%)
 Frame = +2

Query: 137 SNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEP 316
           SN     +L+PAS+ G +IG+ G TIK +Q+ +  V  ++    P+    D+ + I G+ 
Sbjct: 160 SNSTIQEILIPASKVGLVIGRGGETIKQLQERT-GVKMVMIQDGPLPTGADKPLRITGDA 218

Query: 317 LGVHKAVELIANHLRK 364
             V +A E++   +R+
Sbjct: 219 FKVQQAREMVLEIIRE 234



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +2

Query: 164 VPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVEL 343
           VPA + G +IGK G  IKSI   S + V +  N PP +  + R   I+G P  +  A +L
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQL 420

Query: 344 I 346
           I
Sbjct: 421 I 421

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>VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +2

Query: 188 LIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           LIGK GA I  I+D  K  VRI     P       ++ I+G+P GV +A
Sbjct: 450 LIGKSGANINRIKDQYKVSVRI-----PPDSEKSNLIRIEGDPQGVQQA 493



 Score = 29.3 bits (64), Expect = 7.5
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +2

Query: 125 QRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEI 304
           Q+  +N+    + +PA    SLIG +G  I+SI +    V     + P      D VV I
Sbjct: 647 QKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGV---HIHFPVEGSGSDTVV-I 702

Query: 305 QGEPLGVHKAVELIAN-----HLRKFLVDHSVLPLFEQ 403
           +G    V KA + + +       + F VD    P + +
Sbjct: 703 RGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHK 740

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>VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +2

Query: 188 LIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           LIGK GA I  I+D  K  VRI     P       ++ I+G+P GV +A
Sbjct: 450 LIGKSGANINRIKDQYKVSVRI-----PPDSEKSNLIRIEGDPQGVQQA 493



 Score = 29.3 bits (64), Expect = 7.5
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +2

Query: 125 QRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEI 304
           Q+  +N+    + +PA    SLIG +G  I+SI +    V     + P      D VV I
Sbjct: 647 QKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGV---HIHFPVEGSGSDTVV-I 702

Query: 305 QGEPLGVHKAVELIAN-----HLRKFLVDHSVLPLFEQ 403
           +G    V KA + + +       + F VD    P + +
Sbjct: 703 RGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHK 740

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>VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +2

Query: 188 LIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           LIGK GA I  I+D  K  VRI     P       ++ I+G+P GV +A
Sbjct: 450 LIGKSGANINRIKDQYKVSVRI-----PPDSEKSNLIRIEGDPQGVQQA 493



 Score = 29.3 bits (64), Expect = 7.5
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +2

Query: 125 QRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEI 304
           Q+  +N+    + +PA    SLIG +G  I+SI +    V     + P      D VV I
Sbjct: 647 QKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGV---HIHFPVEGSGSDTVV-I 702

Query: 305 QGEPLGVHKAVELIAN-----HLRKFLVDHSVLPLFEQ 403
           +G    V KA + + +       + F VD    P + +
Sbjct: 703 RGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHK 740

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>TIG_XYLFT (Q87E52) Trigger factor (TF)|
          Length = 431

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 137 SNVGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDD-RVVEIQGE 313
           S  G  RL +   +AGS I   G   + I+   + + +  ENV  V   DD RV+++ G+
Sbjct: 167 SQAGDERLPIEGVEAGSTILGSGVMFEQIERGLEGLSKGDENVLDVTFPDDWRVMQLAGK 226

Query: 314 PLGVH-KAVEL 343
            + VH K +E+
Sbjct: 227 AVQVHVKVIEV 237

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>VIGLN_CHICK (P81021) Vigilin|
          Length = 1270

 Score = 33.1 bits (74), Expect = 0.52
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +2

Query: 188 LIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           LIGK GA I  I+D  K  VRI     P       ++ I+G+P GV +A
Sbjct: 449 LIGKNGANINRIKDLYKVSVRI-----PPDNEKSNLIRIEGDPQGVQQA 492

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>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein|
          Length = 560

 Score = 32.7 bits (73), Expect = 0.67
 Identities = 25/80 (31%), Positives = 42/80 (52%)
 Frame = +2

Query: 164 VPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVEL 343
           VP      +IG+QGA IK ++  + + +    +V    + D+RV+ I G P+ V KA   
Sbjct: 59  VPQEAVKLIIGRQGANIKQLRKQTGARI----DVDTEDVGDERVLLISGFPVQVCKAKAA 114

Query: 344 IANHLRKFLVDHSVLPLFEQ 403
           I     + L +++  P+FEQ
Sbjct: 115 I----HQILTENT--PVFEQ 128

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>41_DROME (Q9V8R9) Protein 4.1 homolog (Protein coracle)|
          Length = 1698

 Score = 32.7 bits (73), Expect = 0.67
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = +2

Query: 62   DGLLRIHK----RITDGSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQD 229
            DG+  I K    R ++GS  +    Q GA  V    +  PA QAG  +GK  +T   ++ 
Sbjct: 1384 DGVKHISKGALRRDSEGSSDDDMTAQYGADQVNEILIGSPAGQAGGKLGKPVSTPTVVKT 1443

Query: 230  SSKSVVRIVENVPPVALNDDRVVEIQG 310
            ++K V  + +N+  V  N +  V   G
Sbjct: 1444 TTKQV--LTKNIDGVTHNVEEEVRNLG 1468

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>RS3_HELPY (P56010) 30S ribosomal protein S3|
          Length = 234

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 19/70 (27%), Positives = 37/70 (52%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           R+ V A++ G +IGK+G  I+ ++D  K++++       V++N   + E++        A
Sbjct: 65  RVTVVAARPGLIIGKKGVDIEKVKDGLKTLIK-----KEVSIN---IKEVKHPQADAQLA 116

Query: 335 VELIANHLRK 364
            E +A  L K
Sbjct: 117 AENVATQLEK 126

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>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein|
          Length = 606

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +2

Query: 164 VPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           VP      +IG+QGA IK ++  + + +    +V    + D+RV+ I G P+ V KA
Sbjct: 59  VPQEAVKLIIGRQGANIKQLRKQTGARI----DVDTEDVGDERVLLISGFPVQVCKA 111

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>SC160_YEAST (P06105) Protein SCP160 (Protein HX)|
          Length = 1222

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +2

Query: 158 LLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAV 337
           L+VP    GSLIG  G     +Q+       +  N P     D+ +V I+G   GV+KA 
Sbjct: 717 LIVPVKFHGSLIGPHGTYRNRLQEK----YNVFINFP----RDNEIVTIRGPSRGVNKAH 768

Query: 338 E 340
           E
Sbjct: 769 E 769

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>KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase)
           (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3
           protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein)
           (AtAAA1)
          Length = 523

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 26/71 (36%), Positives = 30/71 (42%)
 Frame = +2

Query: 29  DEPDEPISPAMDGLLRIHKRITDGSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGA 208
           D+PD    P  D   R   R   G  G    PQ GA   GPT    PAS+     G+ GA
Sbjct: 119 DDPDVWRPPTRDVTSRRPARA--GQTGTRKSPQDGAWARGPTTRTGPASRG----GRGGA 172

Query: 209 TIKSIQDSSKS 241
           T KS   +  S
Sbjct: 173 TSKSTAGARSS 183

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>RS3_HELPJ (Q9ZJR9) 30S ribosomal protein S3|
          Length = 234

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 18/70 (25%), Positives = 37/70 (52%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKA 334
           R+ V A++ G +IGK+G  I+ +++  K++++       V++N   + E++        A
Sbjct: 65  RVTVVAARPGLIIGKKGVDIEKVKEGLKTLIK-----KEVSIN---IKEVKRPQADAQLA 116

Query: 335 VELIANHLRK 364
            E +A  L K
Sbjct: 117 AENVATQLEK 126

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>RS3_WOLSU (Q7M8E0) 30S ribosomal protein S3|
          Length = 236

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/31 (38%), Positives = 23/31 (74%)
 Frame = +2

Query: 155 RLLVPASQAGSLIGKQGATIKSIQDSSKSVV 247
           R+ V A++ G +IGK+GA I+ ++++ K +V
Sbjct: 65  RVTVVAARPGIIIGKKGADIEKLKEALKKIV 95

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>ROCA_OCEIH (Q8ERF4) 1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C|
           dehydrogenase)
          Length = 515

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 22/79 (27%), Positives = 38/79 (48%)
 Frame = +2

Query: 143 VGPTRLLVPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLG 322
           +GP  ++ P + A +++   G T+  I   +  +++  EN P +A     V+E  G P G
Sbjct: 172 LGPGVVIPPWNFAFAIVC--GTTVAPIVAGNPVLLKPSENTPVIAYKLVEVLEEAGLPKG 229

Query: 323 VHKAVELIANHLRKFLVDH 379
           V   V      +  +LVDH
Sbjct: 230 VLNFVPGDPAEIGDYLVDH 248

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>VHSJ_LAMBD (P03749) Host specificity protein J|
          Length = 1132

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 21/90 (23%), Positives = 35/90 (38%)
 Frame = +2

Query: 14  IISAKDEPDEPISPAMDGLLRIHKRITDGSDGEFGQPQRGASNVGPTRLLVPASQAGSLI 193
           ++  + + D PI+  +        R T G         +G  N    RLLV   + G  +
Sbjct: 89  VLGTEVKYDTPITRTITSANIDRLRFTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWV 148

Query: 194 GKQGATIKSIQDSSKSVVRIVENVPPVALN 283
            ++  TIK    S      ++ N+PP   N
Sbjct: 149 TEKDITIKGKTTSQYLASVVMGNLPPRPFN 178

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>AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase
           anchor protein 121 kDa) (AKAP 121) (Dual specificity
           A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid
           A-kinase anchor protei
          Length = 854

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = +2

Query: 164 VPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVEL 343
           VP    G LIGKQG  +  ++ +S + + I  +  P   N  ++  I+G    V KA+ L
Sbjct: 565 VPKHLVGRLIGKQGRYVSFLKQTSGAKIYI--STLPYTQN-IQICHIEGSQHHVDKALNL 621

Query: 344 IANHLRKFLVDHSVLP 391
           I    ++  + +   P
Sbjct: 622 IGKKFKELNLTNIYAP 637

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>AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1)
           (Dual-specificity A-kinase-anchoring protein 1)
           (D-AKAP-1) (Spermatid A-kinase anchor protein) (S-AKAP)
          Length = 857

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = +2

Query: 164 VPASQAGSLIGKQGATIKSIQDSSKSVVRIVENVPPVALNDDRVVEIQGEPLGVHKAVEL 343
           VP    G LIGKQG  +  ++ +S + + I  +  P   N  ++  I+G    V KA+ L
Sbjct: 568 VPKHLVGRLIGKQGRYVSFLKQTSGAKIYI--STLPYTQN-IQICHIEGSQHHVDKALNL 624

Query: 344 IANHLRKFLVDHSVLP 391
           I    ++  + +   P
Sbjct: 625 IGKKFKELNLTNIYAP 640


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,407,632
Number of Sequences: 219361
Number of extensions: 1600563
Number of successful extensions: 5083
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 4871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5076
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result